Wall clock time and date at job start Mon Mar 30 2020 19:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 120.00025 * 2 1 4 4 H 1.48506 * 109.46941 * 269.99900 * 3 2 1 5 5 H 1.48496 * 109.47086 * 29.99282 * 3 2 1 6 6 H 1.48488 * 109.47190 * 150.00014 * 3 2 1 7 7 C 1.37871 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00080 * 172.06006 * 7 2 1 9 9 C 1.50703 * 119.99883 * 352.06402 * 7 2 1 10 10 C 1.52995 * 115.56371 * 84.47786 * 9 7 2 11 11 N 1.46505 * 109.46996 * 39.89290 * 10 9 7 12 12 C 1.38461 * 119.99920 * 186.65881 * 11 10 9 13 13 C 1.39401 * 119.53834 * 359.73153 * 12 11 10 14 14 C 1.36857 * 119.37591 * 179.76801 * 13 12 11 15 15 C 1.40350 * 118.49606 * 0.49137 * 14 13 12 16 16 C 1.47539 * 120.47551 * 179.76906 * 15 14 13 17 17 N 1.34778 * 119.99526 * 179.97438 * 16 15 14 18 18 O 1.21583 * 120.00304 * 359.97438 * 16 15 14 19 19 C 1.39562 * 119.04721 * 359.74728 * 15 14 13 20 20 N 1.31680 * 120.51594 * 359.97438 * 19 15 14 21 21 C 1.53002 * 117.49767 * 298.78918 * 9 7 2 22 22 C 1.53006 * 60.03242 * 252.49866 * 21 9 7 23 23 H 0.96997 * 119.99811 * 5.02980 * 1 2 3 24 24 H 1.08997 * 109.47708 * 159.89023 * 10 9 7 25 25 H 1.09004 * 109.47525 * 279.89511 * 10 9 7 26 26 H 0.96992 * 119.99949 * 6.65969 * 11 10 9 27 27 H 1.07998 * 120.30935 * 359.97438 * 13 12 11 28 28 H 1.08000 * 120.75349 * 180.21841 * 14 13 12 29 29 H 0.97002 * 120.00579 * 0.02562 * 17 16 15 30 30 H 0.97000 * 119.99626 * 180.02562 * 17 16 15 31 31 H 1.07991 * 119.74101 * 179.97438 * 19 15 14 32 32 H 1.09001 * 117.49966 * 0.02562 * 21 9 7 33 33 H 1.08997 * 117.49881 * 145.00277 * 21 9 7 34 34 H 1.08997 * 117.49591 * 107.50009 * 22 21 9 35 35 H 1.08994 * 117.49642 * 252.52446 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0768 -1.1985 -0.1287 9 6 1.2618 -2.4928 0.1813 10 6 0.6578 -3.0905 -1.0909 11 7 1.5935 -2.9158 -2.2046 12 6 1.2096 -3.2543 -3.4911 13 6 -0.0677 -3.7659 -3.7149 14 6 -0.4455 -4.0949 -4.9885 15 6 0.4787 -3.9133 -6.0290 16 6 0.1193 -4.2585 -7.4177 17 7 1.0141 -4.0796 -8.4096 18 8 -0.9840 -4.7042 -7.6673 19 6 1.7423 -3.4011 -5.7313 20 7 2.0636 -3.0919 -4.4923 21 6 0.4926 -2.6906 1.4890 22 6 1.7874 -3.4666 1.2391 23 1 -0.4850 0.8368 -0.0736 24 1 0.4684 -4.1530 -0.9389 25 1 -0.2795 -2.5837 -1.3210 26 1 2.4820 -2.5630 -2.0406 27 1 -0.7539 -3.8981 -2.8914 28 1 -1.4308 -4.4896 -5.1877 29 1 1.8945 -3.7244 -8.2105 30 1 0.7778 -4.3062 -9.3227 31 1 2.4623 -3.2572 -6.5233 32 1 0.5233 -1.8811 2.2184 33 1 -0.4440 -3.2462 1.4429 34 1 2.6702 -3.1678 1.8042 35 1 1.7024 -4.5325 1.0281 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340907708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:00:26 Heat of formation + Delta-G solvation = -0.167738 kcal Electronic energy + Delta-G solvation = -18776.420001 eV Core-core repulsion = 15773.936234 eV Total energy + Delta-G solvation = -3002.483767 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.48381 -39.92590 -38.72163 -35.94410 -34.63857 -34.01526 -33.43999 -30.82249 -27.86837 -27.19056 -24.43586 -24.28411 -22.89561 -21.66075 -21.12937 -19.10464 -18.58403 -18.11652 -17.61669 -16.98606 -16.61489 -15.98498 -15.93785 -15.71544 -15.37450 -15.03103 -14.73180 -14.40119 -13.95304 -13.91358 -13.51825 -13.42815 -12.93705 -12.87456 -12.38316 -12.03503 -11.49506 -11.29860 -11.23605 -10.88086 -10.76019 -10.62759 -10.47414 -10.36747 -9.97445 -8.57461 -8.13107 -6.23979 -0.01862 0.44099 1.38783 1.43139 1.49859 1.98585 2.29739 2.41630 2.68168 3.04690 3.16510 3.47782 3.64288 3.95127 3.98783 4.17178 4.21524 4.36715 4.51627 4.65377 4.69571 4.77565 4.95430 5.01802 5.04248 5.24897 5.27287 5.46038 5.62201 5.65391 5.75219 5.96994 6.09707 6.37531 6.50350 6.74957 6.82358 7.19874 7.39676 7.45524 8.93712 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.024762 B = 0.004829 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.503776 B = 5797.237357 C = 6340.116408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.037 3.963 3 Si 0.939 3.061 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.505 4.505 8 H 0.055 0.945 9 C 0.002 3.998 10 C 0.176 3.824 11 N -0.678 5.678 12 C 0.419 3.581 13 C -0.262 4.262 14 C 0.022 3.978 15 C -0.291 4.291 16 C 0.581 3.419 17 N -0.831 5.831 18 O -0.598 6.598 19 C 0.201 3.799 20 N -0.575 5.575 21 C -0.157 4.157 22 C -0.185 4.185 23 H 0.259 0.741 24 H 0.059 0.941 25 H 0.047 0.953 26 H 0.407 0.593 27 H 0.137 0.863 28 H 0.143 0.857 29 H 0.415 0.585 30 H 0.413 0.587 31 H 0.196 0.804 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.701 -7.173 -10.682 13.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.543 4.543 8 H 0.073 0.927 9 C 0.002 3.998 10 C 0.052 3.948 11 N -0.302 5.302 12 C 0.180 3.820 13 C -0.287 4.287 14 C -0.003 4.003 15 C -0.300 4.300 16 C 0.368 3.632 17 N -0.395 5.395 18 O -0.480 6.480 19 C 0.039 3.961 20 N -0.294 5.294 21 C -0.195 4.195 22 C -0.222 4.222 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.244 0.756 27 H 0.155 0.845 28 H 0.161 0.839 29 H 0.248 0.752 30 H 0.245 0.755 31 H 0.212 0.788 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.512 -6.987 -10.138 12.804 hybrid contribution -0.069 1.140 -0.051 1.143 sum 3.443 -5.847 -10.189 12.241 Atomic orbital electron populations 1.70047 1.06927 1.27232 1.49460 1.25524 0.95341 1.01439 0.94218 0.85844 0.79113 0.80552 0.77872 1.20830 1.21419 1.19208 1.20519 0.93093 0.89852 1.50812 0.92657 1.19094 0.99481 0.94388 0.86885 1.20853 0.91215 0.97292 0.85442 1.44751 1.18040 1.64648 1.02729 1.18913 0.89468 0.87322 0.86303 1.21192 0.97114 1.11326 0.99091 1.21186 0.98844 0.89622 0.90688 1.20464 0.98469 1.16725 0.94348 1.17943 0.83774 0.76036 0.85441 1.43495 1.17805 1.67913 1.10319 1.90764 1.23910 1.48461 1.84909 1.23126 0.93236 0.87197 0.92573 1.67312 1.35821 1.25751 1.00524 1.22449 0.94256 1.01223 1.01543 1.23110 0.97191 0.96556 1.05300 0.93217 0.92342 0.93507 0.75649 0.84480 0.83923 0.75243 0.75496 0.78778 0.92187 0.90222 0.90373 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.56 13.00 21.45 0.28 -48.28 16 2 C 0.04 1.88 5.38 84.65 0.46 2.33 16 3 Si 0.94 41.71 29.55 68.60 2.03 43.74 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.50 -24.97 7.52 25.60 0.19 -24.78 16 8 H 0.06 2.74 7.83 -2.91 -0.02 2.71 16 9 C 0.00 0.10 1.68 -52.90 -0.09 0.01 16 10 C 0.18 7.03 5.03 86.38 0.43 7.46 16 11 N -0.68 -26.21 5.42 -345.16 -1.87 -28.08 16 12 C 0.42 15.04 7.64 133.25 1.02 16.05 16 13 C -0.26 -8.64 9.22 22.23 0.20 -8.44 16 14 C 0.02 0.68 9.65 22.46 0.22 0.89 16 15 C -0.29 -7.88 5.89 -19.99 -0.12 -8.00 16 16 C 0.58 14.71 8.04 86.70 0.70 15.41 16 17 N -0.83 -11.94 8.83 -175.81 -1.55 -13.49 16 18 O -0.60 -20.09 17.24 -3.98 -0.07 -20.15 16 19 C 0.20 5.03 10.71 85.04 0.91 5.94 16 20 N -0.58 -18.84 10.38 -192.33 -2.00 -20.84 16 21 C -0.16 -6.61 9.54 30.60 0.29 -6.32 16 22 C -0.18 -6.98 9.89 30.62 0.30 -6.68 16 23 H 0.26 13.62 8.32 -92.71 -0.77 12.85 16 24 H 0.06 2.05 7.94 -2.39 -0.02 2.03 16 25 H 0.05 2.08 7.56 -2.38 -0.02 2.06 16 26 H 0.41 16.41 7.72 -92.71 -0.72 15.70 16 27 H 0.14 4.38 6.63 -2.91 -0.02 4.36 16 28 H 0.14 4.08 7.73 -2.91 -0.02 4.06 16 29 H 0.42 3.34 6.88 -92.71 -0.64 2.70 16 30 H 0.41 4.61 8.93 -92.71 -0.83 3.78 16 31 H 0.20 2.83 6.41 -2.92 -0.02 2.81 16 32 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 34 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 35 H 0.09 3.05 8.08 -2.39 -0.02 3.03 16 Total: -1.00 -63.46 304.38 0.31 -63.16 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: -1.03 Total: 30.07 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 4.52 Total: -6.12 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -5.14 Total: -110.69 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.07 Total: -20.15 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -63.46 0.31 -63.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340907708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.987 kcal (2) G-P(sol) polarization free energy of solvation -63.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds