Wall clock time and date at job start Mon Mar 30 2020 18:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47383 * 63.97563 * 3 2 1 5 5 C 1.36987 * 119.99864 * 266.68880 * 4 3 2 6 6 H 1.07999 * 120.00010 * 209.38163 * 5 4 3 7 7 C 1.38971 * 120.00017 * 29.65408 * 5 4 3 8 8 N 1.31416 * 120.00240 * 326.41982 * 7 5 4 9 9 Si 1.86804 * 120.00124 * 146.42203 * 7 5 4 10 10 H 1.48498 * 109.46626 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47186 * 120.00008 * 9 7 5 12 12 H 1.48498 * 109.47240 * 240.00179 * 9 7 5 13 13 C 1.34775 * 120.00235 * 86.68419 * 4 3 2 14 14 O 1.21625 * 120.00031 * 178.67794 * 13 4 3 15 15 C 1.47360 * 119.99729 * 358.67473 * 13 4 3 16 16 C 1.41314 * 126.42497 * 351.28676 * 15 13 4 17 17 N 1.30446 * 108.02831 * 179.85485 * 16 15 13 18 18 N 1.39926 * 108.91198 * 0.40548 * 17 16 15 19 19 C 1.46500 * 125.74894 * 179.70341 * 18 17 16 20 20 C 1.53002 * 109.47105 * 95.04362 * 19 18 17 21 21 C 1.52998 * 109.47062 * 215.03907 * 19 18 17 22 22 C 1.34285 * 108.49903 * 359.73494 * 18 17 16 23 23 H 4.40639 * 5.51435 * 180.02562 * 4 1 2 24 24 H 1.08996 * 109.47474 * 303.97070 * 3 2 1 25 25 H 1.09004 * 109.47115 * 183.97569 * 3 2 1 26 26 H 0.96996 * 120.00412 * 179.97438 * 8 7 5 27 27 H 1.08003 * 125.98482 * 0.02562 * 16 15 13 28 28 H 1.09000 * 109.47460 * 335.04259 * 19 18 17 29 29 H 1.08996 * 109.47048 * 299.99515 * 20 19 18 30 30 H 1.08997 * 109.47223 * 60.00141 * 20 19 18 31 31 H 1.09006 * 109.47039 * 179.97438 * 20 19 18 32 32 H 1.09004 * 109.46868 * 60.00363 * 21 19 18 33 33 H 1.09006 * 109.47209 * 180.02562 * 21 19 18 34 34 H 1.08997 * 109.47588 * 300.00056 * 21 19 18 35 35 H 1.08002 * 126.29588 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.6051 -1.2412 5 6 3.4282 -1.9426 -1.2812 6 1 4.1889 -2.3085 -1.9549 7 6 2.7433 -2.8292 -0.4591 8 7 2.3484 -2.4472 0.7347 9 14 2.3839 -4.5643 -1.0508 10 1 2.9305 -4.7434 -2.4198 11 1 3.0203 -5.5423 -0.1323 12 1 0.9157 -4.7864 -1.0705 13 6 3.2954 0.1534 -2.3436 14 8 3.7238 -0.3446 -3.3672 15 6 2.9518 1.5859 -2.3087 16 6 2.2894 2.2647 -1.2611 17 7 2.1726 3.5182 -1.6026 18 7 2.7377 3.6976 -2.8700 19 6 2.8009 4.9616 -3.6079 20 6 4.1515 5.6339 -3.3532 21 6 2.6423 4.6869 -5.1046 22 6 3.2117 2.5157 -3.2963 23 1 -1.0498 0.0001 -0.0003 24 1 3.0097 -0.5734 0.8522 25 1 3.0089 1.0261 0.0713 26 1 1.8700 -3.0659 1.3084 27 1 1.9432 1.8235 -0.3381 28 1 1.9988 5.6189 -3.2721 29 1 4.2645 5.8296 -2.2869 30 1 4.9536 4.9767 -3.6890 31 1 4.1987 6.5742 -3.9026 32 1 1.6801 4.2079 -5.2861 33 1 2.6897 5.6273 -5.6537 34 1 3.4443 4.0296 -5.4405 35 1 3.7049 2.3269 -4.2384 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281577607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:58:58 Heat of formation + Delta-G solvation = 133.869757 kcal Electronic energy + Delta-G solvation = -19493.424039 eV Core-core repulsion = 16496.752574 eV Total energy + Delta-G solvation = -2996.671465 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 261.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97930 -38.23623 -35.65098 -35.15122 -32.41152 -31.28732 -29.99993 -29.54295 -27.50385 -26.58370 -24.93349 -23.04281 -21.28641 -19.91961 -19.07324 -17.83106 -17.09365 -16.47111 -15.61697 -15.22124 -14.65779 -14.41203 -14.20148 -14.01825 -13.83555 -13.01829 -12.80819 -12.62601 -12.40320 -12.39173 -12.17579 -11.60976 -11.51587 -11.33097 -11.23193 -10.85374 -10.56749 -10.43279 -10.23859 -9.64127 -9.32424 -8.96793 -8.68385 -8.42500 -8.05822 -7.79338 -6.42940 -3.80776 2.10808 2.66162 2.84099 3.22444 3.33411 3.42812 3.65442 3.85095 4.21520 4.39550 4.47505 4.71896 4.87843 4.96808 5.05887 5.14825 5.26688 5.39514 5.42111 5.45315 5.48870 5.66510 5.81959 5.93552 5.97269 6.08050 6.21255 6.45350 6.88970 6.96517 7.11354 7.29512 7.59693 8.04347 8.23990 8.54813 8.61460 9.19291 9.41166 10.03502 10.57930 Molecular weight = 261.12amu Principal moments of inertia in cm(-1) A = 0.032601 B = 0.005706 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.667748 B = 4905.674776 C = 5369.513469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.130 4.130 3 C 0.187 3.813 4 N -0.434 5.434 5 C -0.327 4.327 6 H 0.103 0.897 7 C 0.056 3.944 8 N -0.848 5.848 9 Si 0.900 3.100 10 H -0.265 1.265 11 H -0.284 1.284 12 H -0.280 1.280 13 C 0.528 3.472 14 O -0.589 6.589 15 C -0.256 4.256 16 C 0.051 3.949 17 N -0.312 5.312 18 N -0.367 5.367 19 C 0.155 3.845 20 C -0.165 4.165 21 C -0.167 4.167 22 C 0.100 3.900 23 H 0.203 0.797 24 H 0.144 0.856 25 H 0.075 0.925 26 H 0.270 0.730 27 H 0.210 0.790 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.403 13.362 -3.979 13.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.132 4.132 3 C 0.064 3.936 4 N -0.151 5.151 5 C -0.453 4.453 6 H 0.120 0.880 7 C -0.150 4.150 8 N -0.484 5.484 9 Si 0.725 3.275 10 H -0.189 1.189 11 H -0.210 1.210 12 H -0.206 1.206 13 C 0.318 3.682 14 O -0.474 6.474 15 C -0.271 4.271 16 C -0.135 4.135 17 N -0.132 5.132 18 N -0.148 5.148 19 C 0.053 3.947 20 C -0.223 4.223 21 C -0.225 4.225 22 C -0.049 4.049 23 H 0.220 0.780 24 H 0.161 0.839 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.226 0.774 28 H 0.119 0.881 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -0.665 14.298 -4.011 14.865 hybrid contribution -0.382 -1.731 -0.336 1.804 sum -1.046 12.567 -4.347 13.339 Atomic orbital electron populations 1.24473 0.95581 1.04416 1.02983 1.23614 0.94857 0.96751 0.97940 1.19528 0.83557 0.98067 0.92470 1.43354 1.56550 1.08449 1.06759 1.19380 1.21158 0.80201 1.24539 0.87959 1.25290 0.95172 1.00231 0.94317 1.69922 1.35668 1.37416 1.05350 0.86332 0.78520 0.82582 0.80042 1.18945 1.20990 1.20570 1.17057 0.83418 0.84085 0.83646 1.90584 1.51388 1.74131 1.31333 1.20667 1.13122 0.96405 0.96921 1.25417 0.97282 0.90361 1.00438 1.77077 1.20967 1.19543 0.95588 1.48613 1.44832 1.07298 1.14068 1.21219 0.99708 0.82593 0.91187 1.22245 0.96058 1.00872 1.03124 1.22220 1.03560 1.03343 0.93362 1.22689 0.97872 0.84773 0.99598 0.78041 0.83862 0.90729 0.91907 0.77410 0.88132 0.91577 0.91745 0.90703 0.91385 0.90161 0.91251 0.80499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.22 19.25 29.55 0.57 -4.65 16 2 C -0.13 -2.90 9.80 -37.12 -0.36 -3.26 16 3 C 0.19 4.24 4.69 -6.83 -0.03 4.21 16 4 N -0.43 -11.27 2.59 -119.17 -0.31 -11.58 16 5 C -0.33 -9.09 9.02 -14.98 -0.14 -9.23 16 6 H 0.10 2.98 7.68 -52.49 -0.40 2.58 16 7 C 0.06 1.48 5.26 -17.46 -0.09 1.39 16 8 N -0.85 -21.81 9.52 55.50 0.53 -21.29 16 9 Si 0.90 20.88 29.66 -169.99 -5.04 15.83 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.53 13.55 7.59 -12.55 -0.10 13.45 16 14 O -0.59 -16.73 16.67 5.26 0.09 -16.64 16 15 C -0.26 -5.47 5.96 -105.07 -0.63 -6.10 16 16 C 0.05 0.99 9.34 -16.97 -0.16 0.84 16 17 N -0.31 -5.68 12.50 30.87 0.39 -5.30 16 18 N -0.37 -5.78 3.50 -54.29 -0.19 -5.97 16 19 C 0.15 1.69 3.91 -67.93 -0.27 1.42 16 20 C -0.16 -1.52 9.52 37.16 0.35 -1.16 16 21 C -0.17 -1.46 8.82 37.16 0.33 -1.13 16 22 C 0.10 1.78 10.41 -16.53 -0.17 1.61 16 23 H 0.20 3.32 7.80 -54.10 -0.42 2.90 16 24 H 0.14 3.46 5.90 -51.93 -0.31 3.15 16 25 H 0.08 1.51 4.63 -51.93 -0.24 1.27 16 26 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 27 H 0.21 4.01 3.36 -52.48 -0.18 3.83 16 28 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.61 7.13 -51.93 -0.37 0.24 16 35 H 0.18 2.78 7.23 -52.49 -0.38 2.40 16 LS Contribution 300.21 15.07 4.52 4.52 Total: -1.00 -32.28 300.21 -4.67 -36.95 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -3.97 Total: 6.09 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -0.69 Total: -2.62 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 0.42 Total: -44.13 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.09 Total: -16.64 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.04 Total: 15.83 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.28 -4.67 -36.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281577607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.818 kcal (2) G-P(sol) polarization free energy of solvation -32.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds