Wall clock time and date at job start Mon Mar 30 2020 19:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47080 * 2 1 4 4 C 1.37101 * 120.00587 * 94.60896 * 3 2 1 5 5 H 1.07995 * 119.99772 * 217.77886 * 4 3 2 6 6 C 1.38954 * 119.99583 * 37.77204 * 4 3 2 7 7 N 1.31408 * 120.00152 * 19.68823 * 6 4 3 8 8 Si 1.86798 * 119.99468 * 199.68460 * 6 4 3 9 9 H 1.48502 * 109.47332 * 60.00449 * 8 6 4 10 10 H 1.48497 * 109.46913 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47564 * 300.00241 * 8 6 4 12 12 C 1.34783 * 119.99712 * 274.33122 * 3 2 1 13 13 O 1.21292 * 119.99953 * 180.27795 * 12 3 2 14 14 C 1.50704 * 119.99658 * 0.27428 * 12 3 2 15 15 C 1.50702 * 109.46885 * 179.97438 * 14 12 3 16 16 C 1.38257 * 119.99908 * 89.99820 * 15 14 12 17 17 C 1.38210 * 119.99871 * 179.97438 * 16 15 14 18 18 C 1.38256 * 120.00100 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99837 * 180.02562 * 18 17 16 20 20 C 1.38207 * 120.00055 * 359.97438 * 18 17 16 21 21 C 1.50699 * 119.99946 * 180.02562 * 20 18 17 22 22 C 1.38207 * 120.00020 * 269.72924 * 15 14 12 23 23 H 1.08998 * 109.47252 * 60.00681 * 1 2 3 24 24 H 1.09005 * 109.46948 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47259 * 300.00190 * 1 2 3 26 26 H 1.08999 * 109.47089 * 239.99284 * 2 1 3 27 27 H 1.09005 * 109.46947 * 119.99597 * 2 1 3 28 28 H 0.97000 * 120.00028 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47093 * 299.99888 * 14 12 3 30 30 H 1.08991 * 109.47182 * 60.00334 * 14 12 3 31 31 H 1.07999 * 119.99868 * 0.02562 * 16 15 14 32 32 H 1.08000 * 119.99944 * 180.02562 * 17 16 15 33 33 H 1.08995 * 109.47382 * 89.99863 * 19 18 17 34 34 H 1.09007 * 109.46907 * 209.99942 * 19 18 17 35 35 H 1.08996 * 109.47416 * 329.99236 * 19 18 17 36 36 H 1.09000 * 109.47683 * 89.99929 * 21 20 18 37 37 H 1.09004 * 109.47229 * 209.99642 * 21 20 18 38 38 H 1.09000 * 109.47413 * 329.99493 * 21 20 18 39 39 H 1.08001 * 120.00137 * 359.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3368 1.9958 1.1834 5 1 2.1091 3.0417 1.3270 6 6 2.9523 1.2729 2.1980 7 7 3.5737 0.1489 1.9200 8 14 2.8965 1.8992 3.9570 9 1 1.4831 2.0065 4.3997 10 1 3.6226 0.9535 4.8423 11 1 3.5401 3.2356 4.0274 12 6 2.1598 2.0459 -1.1640 13 8 2.5689 3.1877 -1.1644 14 6 1.8098 1.3703 -2.4648 15 6 2.0553 2.3221 -3.6071 16 6 3.2918 2.3566 -4.2246 17 6 3.5167 3.2292 -5.2726 18 6 2.5054 4.0679 -5.7030 19 6 2.7506 5.0189 -6.8461 20 6 1.2694 4.0334 -5.0858 21 6 0.1669 4.9472 -5.5554 22 6 1.0426 3.1566 -4.0411 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 4.0037 -0.3555 2.6282 29 1 2.4295 0.4826 -2.5914 30 1 0.7590 1.0811 -2.4528 31 1 4.0816 1.7011 -3.8886 32 1 4.4825 3.2558 -5.7552 33 1 2.4969 4.5298 -7.7865 34 1 2.1308 5.9066 -6.7195 35 1 3.8014 5.3083 -6.8589 36 1 -0.4111 4.4492 -6.3338 37 1 -0.4861 5.1895 -4.7169 38 1 0.6003 5.8640 -5.9550 39 1 0.0752 3.1263 -3.5618 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050164708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:04:23 Heat of formation + Delta-G solvation = -39.252099 kcal Electronic energy + Delta-G solvation = -19487.252257 eV Core-core repulsion = 16586.614008 eV Total energy + Delta-G solvation = -2900.638248 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 3.21 seconds Orbital eigenvalues (eV) -40.94716 -39.90385 -36.91449 -35.04202 -33.97461 -33.07876 -31.16556 -30.59118 -28.13810 -27.15610 -25.66349 -23.89765 -22.96467 -21.60011 -20.23737 -18.71923 -17.75193 -17.06186 -16.75301 -16.66928 -15.98685 -15.59400 -15.48322 -15.04463 -14.52245 -14.45929 -14.00783 -13.81114 -13.66699 -13.54011 -13.46808 -13.40205 -12.86144 -12.74422 -12.69018 -12.63349 -12.45491 -12.23036 -12.09526 -11.82094 -11.75607 -11.66015 -10.88055 -10.37499 -9.58397 -9.42023 -9.23966 -8.33090 -6.07112 0.47397 0.54137 1.38669 1.40135 1.50562 2.07649 2.29940 2.77814 3.02059 3.24158 3.82805 3.91233 4.06203 4.16087 4.19000 4.28188 4.34465 4.43812 4.58963 4.65149 4.66777 4.75350 4.76442 4.85564 4.89165 4.93114 5.04609 5.07930 5.08170 5.30969 5.32393 5.41500 5.46445 5.56771 5.59125 5.76402 5.79775 6.20166 6.24797 6.57081 7.20319 7.48994 8.10707 8.69349 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.030617 B = 0.004743 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.298761 B = 5902.491835 C = 6065.130163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.096 3.904 3 N -0.456 5.456 4 C -0.342 4.342 5 H 0.059 0.941 6 C 0.004 3.996 7 N -0.891 5.891 8 Si 0.981 3.019 9 H -0.263 1.263 10 H -0.270 1.270 11 H -0.280 1.280 12 C 0.451 3.549 13 O -0.624 6.624 14 C -0.086 4.086 15 C -0.072 4.072 16 C -0.132 4.132 17 C -0.124 4.124 18 C -0.105 4.105 19 C -0.109 4.109 20 C -0.098 4.098 21 C -0.111 4.111 22 C -0.123 4.123 23 H 0.054 0.946 24 H 0.085 0.915 25 H 0.039 0.961 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.273 0.727 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.139 0.861 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.083 0.917 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.934 1.131 -14.060 15.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.027 4.027 3 N -0.175 5.175 4 C -0.470 4.470 5 H 0.077 0.923 6 C -0.198 4.198 7 N -0.528 5.528 8 Si 0.804 3.196 9 H -0.188 1.188 10 H -0.195 1.195 11 H -0.205 1.205 12 C 0.241 3.759 13 O -0.511 6.511 14 C -0.126 4.126 15 C -0.072 4.072 16 C -0.150 4.150 17 C -0.142 4.142 18 C -0.105 4.105 19 C -0.165 4.165 20 C -0.098 4.098 21 C -0.167 4.167 22 C -0.141 4.141 23 H 0.073 0.927 24 H 0.104 0.896 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.132 0.868 32 H 0.157 0.843 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.638 1.507 -13.936 15.109 hybrid contribution 0.389 0.004 1.379 1.433 sum -5.249 1.511 -12.557 13.693 Atomic orbital electron populations 1.22103 0.95282 1.02522 1.01255 1.21649 0.94108 0.83498 1.03475 1.43787 1.56265 1.13144 1.04315 1.19311 1.39652 0.96284 0.91751 0.92329 1.26092 0.93286 0.96636 1.03807 1.69973 1.31269 1.16959 1.34629 0.85206 0.78970 0.77975 0.77453 1.18796 1.19466 1.20522 1.21132 0.81121 0.87556 0.86077 1.90487 1.51672 1.21084 1.87814 1.20628 1.04266 0.97958 0.89728 1.19516 0.94740 0.97729 0.95263 1.21112 0.96189 1.00535 0.97176 1.21210 0.99796 0.96065 0.97093 1.20120 0.93011 0.98403 0.98965 1.20861 1.02952 0.97590 0.95126 1.20073 0.96249 0.97561 0.95906 1.20871 0.95719 0.98319 1.01783 1.21005 0.98994 0.96522 0.97625 0.92675 0.89584 0.94138 0.91530 0.89701 0.91707 0.88170 0.87322 0.86836 0.84277 0.89727 0.90261 0.91102 0.89548 0.91970 0.89804 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 10.16 71.98 0.73 -4.58 16 2 C 0.10 4.15 5.43 86.38 0.47 4.62 16 3 N -0.46 -23.97 2.53 -635.53 -1.61 -25.57 16 4 C -0.34 -19.94 8.90 84.04 0.75 -19.19 16 5 H 0.06 3.67 7.77 -2.91 -0.02 3.65 16 6 C 0.00 0.22 4.95 84.93 0.42 0.65 16 7 N -0.89 -48.79 11.44 21.66 0.25 -48.54 16 8 Si 0.98 43.17 29.60 68.60 2.03 45.20 16 9 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 10 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 C 0.45 23.24 7.60 87.66 0.67 23.91 16 13 O -0.62 -37.73 15.91 -3.07 -0.05 -37.78 16 14 C -0.09 -3.33 4.44 29.10 0.13 -3.20 16 15 C -0.07 -2.71 4.37 -19.87 -0.09 -2.80 16 16 C -0.13 -4.71 9.70 22.27 0.22 -4.49 16 17 C -0.12 -3.73 9.70 22.27 0.22 -3.51 16 18 C -0.10 -2.88 5.88 -19.87 -0.12 -3.00 16 19 C -0.11 -2.01 9.60 71.24 0.68 -1.33 16 20 C -0.10 -2.84 5.88 -19.87 -0.12 -2.96 16 21 C -0.11 -2.30 9.60 71.24 0.68 -1.62 16 22 C -0.12 -4.22 9.36 22.27 0.21 -4.01 16 23 H 0.05 1.75 6.69 -2.39 -0.02 1.73 16 24 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 25 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.07 2.57 6.62 -2.39 -0.02 2.55 16 27 H 0.08 4.10 5.53 -2.38 -0.01 4.09 16 28 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 29 H 0.10 3.56 7.34 -2.39 -0.02 3.54 16 30 H 0.11 3.59 6.56 -2.39 -0.02 3.58 16 31 H 0.11 3.96 8.06 -2.91 -0.02 3.94 16 32 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.08 1.28 5.95 -2.38 -0.01 1.26 16 35 H 0.07 1.20 8.09 -2.39 -0.02 1.18 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 1.31 8.09 -2.38 -0.02 1.29 16 38 H 0.08 1.45 5.95 -2.39 -0.01 1.44 16 39 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -72.30 320.01 6.51 -65.79 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 1.03 Total: 22.42 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 4.85 Total: -21.52 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -1.36 Total: -74.11 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -0.05 Total: -37.78 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -72.30 6.51 -65.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050164708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.533 kcal (2) G-P(sol) polarization free energy of solvation -72.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.21 seconds