Wall clock time and date at job start Mon Mar 30 2020 19:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47294 * 179.97438 * 10 9 7 12 12 N 1.28380 * 119.14370 * 269.73185 * 11 10 9 13 13 C 1.30363 * 122.49153 * 179.75137 * 12 11 10 14 14 C 1.40615 * 120.44078 * 0.51203 * 13 12 11 15 15 Cl 1.73606 * 120.86338 * 179.73396 * 14 13 12 16 16 C 1.36865 * 118.26617 * 359.75648 * 14 13 12 17 17 Cl 1.73604 * 121.11238 * 179.97438 * 16 14 13 18 18 C 1.34659 * 119.14332 * 89.99569 * 11 10 9 19 19 O 1.22087 * 120.34866 * 0.02562 * 18 11 10 20 20 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 22 22 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 23 23 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 24 24 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 25 25 H 1.08001 * 119.78064 * 180.25007 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5128 -4.9308 -0.0020 12 7 1.2042 -5.4750 1.1191 13 6 0.5497 -6.5999 1.1948 14 6 0.1591 -7.2769 0.0259 15 17 -0.7068 -8.7790 0.1139 16 6 0.4799 -6.7211 -1.1830 17 17 0.0347 -7.4942 -2.6723 18 6 1.1853 -5.4985 -1.1783 19 8 1.4960 -4.9618 -2.2299 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6246 -2.5563 -0.8919 23 1 2.8725 -3.6039 -0.8910 24 1 2.8713 -3.6047 0.8890 25 1 0.3095 -7.0167 2.1617 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078819877.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:07:24 Heat of formation + Delta-G solvation = 11.547003 kcal Electronic energy + Delta-G solvation = -15010.143122 eV Core-core repulsion = 12077.058809 eV Total energy + Delta-G solvation = -2933.084313 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 262.002 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.97842 -37.81137 -37.44531 -36.66442 -34.89917 -33.05723 -31.34784 -29.97540 -26.11840 -24.61483 -23.71927 -21.35063 -18.86906 -17.84678 -16.92372 -16.55263 -16.09289 -15.17313 -14.54506 -14.47690 -13.75105 -13.36182 -13.21196 -13.13661 -12.34439 -12.18978 -11.85423 -11.54752 -11.19977 -11.02641 -10.97303 -10.83649 -10.20243 -10.18446 -9.83164 -9.50638 -9.36634 -8.48061 -8.32625 -6.12794 -4.18084 0.15347 1.40268 1.49468 1.71933 2.51575 3.25549 3.28640 3.33178 3.35485 3.95249 4.36750 4.43448 4.71048 5.23984 5.27500 5.48328 5.89655 5.99829 6.07854 6.41147 7.43310 7.46376 7.61181 7.81554 8.14843 8.19715 8.86094 9.46753 10.98650 Molecular weight = 262.00amu Principal moments of inertia in cm(-1) A = 0.037545 B = 0.004916 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.598189 B = 5694.782957 C = 6031.748795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.015 3.985 10 C 0.109 3.891 11 N -0.319 5.319 12 N -0.173 5.173 13 C 0.018 3.982 14 C 0.015 3.985 15 Cl -0.022 7.022 16 C -0.120 4.120 17 Cl -0.001 7.001 18 C 0.489 3.511 19 O -0.494 6.494 20 H 0.264 0.736 21 H 0.027 0.973 22 H 0.026 0.974 23 H 0.100 0.900 24 H 0.096 0.904 25 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.219 -17.022 2.220 17.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.565 4.565 8 H 0.079 0.921 9 C -0.023 4.023 10 C -0.008 4.008 11 N -0.142 5.142 12 N 0.001 4.999 13 C -0.171 4.171 14 C -0.019 4.019 15 Cl 0.007 6.993 16 C -0.160 4.160 17 Cl 0.028 6.972 18 C 0.283 3.717 19 O -0.369 6.369 20 H 0.074 0.926 21 H 0.045 0.955 22 H 0.044 0.956 23 H 0.118 0.882 24 H 0.114 0.886 25 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 0.120 -16.062 1.940 16.179 hybrid contribution -0.211 0.075 -0.654 0.692 sum -0.091 -15.986 1.286 16.038 Atomic orbital electron populations 1.69961 1.06180 1.27171 1.49507 1.24993 0.94900 0.99468 0.94734 0.86526 0.79493 0.82470 0.78775 1.20012 1.21171 1.20020 1.20891 0.93094 0.89971 1.52507 0.92078 1.19441 0.94072 0.90270 0.98534 1.22804 0.96065 0.77642 1.04311 1.47546 1.43801 1.21740 1.01065 1.71020 1.07366 1.08608 1.12857 1.23334 1.02950 0.92507 0.98272 1.22402 0.95408 0.90341 0.93786 1.98415 1.73562 1.28752 1.98537 1.22314 1.07111 0.97477 0.89130 1.98386 1.90278 1.78076 1.30454 1.17291 0.83108 0.85596 0.85660 1.91072 1.53677 1.63399 1.28785 0.92621 0.95494 0.95596 0.88159 0.88553 0.78429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.63 15 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 3 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 15 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 15 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 7 C -0.53 -14.36 9.11 -34.44 -0.31 -14.67 15 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 15 9 C 0.01 0.37 5.30 -27.88 -0.15 0.23 15 10 C 0.11 2.20 5.50 -4.05 -0.02 2.18 15 11 N -0.32 -5.88 3.22 -63.33 -0.20 -6.08 15 12 N -0.17 -2.71 10.89 30.70 0.33 -2.38 15 13 C 0.02 0.22 11.15 -17.28 -0.19 0.03 15 14 C 0.02 0.19 6.37 -39.18 -0.25 -0.06 15 15 Cl -0.02 -0.22 28.16 -51.86 -1.46 -1.68 15 16 C -0.12 -1.87 6.40 -38.97 -0.25 -2.12 15 17 Cl 0.00 -0.01 27.80 -51.86 -1.44 -1.46 15 18 C 0.49 9.27 7.47 -15.21 -0.11 9.16 15 19 O -0.49 -10.92 16.21 4.84 0.08 -10.84 15 20 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 21 H 0.03 0.72 8.14 -51.93 -0.42 0.29 15 22 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 23 H 0.10 2.04 7.37 -51.93 -0.38 1.66 15 24 H 0.10 1.75 8.14 -51.93 -0.42 1.32 15 25 H 0.20 1.54 8.06 -52.49 -0.42 1.12 15 LS Contribution 263.07 15.07 3.96 3.96 Total: -1.00 -30.80 263.07 -6.01 -36.81 By element: Atomic # 1 Polarization: -3.61 SS G_CDS: -1.61 Total: -5.22 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -1.39 Total: -3.63 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.87 Total: -34.09 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.08 Total: -10.84 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -2.90 Total: -3.14 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.80 -6.01 -36.81 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078819877.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.358 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds