Wall clock time and date at job start Mon Mar 30 2020 19:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.91331 * 2 1 4 4 C 1.55154 * 111.00682 * 123.90080 * 2 1 3 5 5 C 1.54325 * 102.94303 * 153.57509 * 4 2 1 6 6 N 1.47290 * 107.30599 * 337.81911 * 5 4 2 7 7 S 1.65600 * 125.79191 * 178.92104 * 6 5 4 8 8 O 1.42102 * 106.39927 * 23.54424 * 7 6 5 9 9 O 1.42099 * 106.39870 * 156.46148 * 7 6 5 10 10 N 1.65590 * 107.21954 * 270.00102 * 7 6 5 11 11 C 1.46498 * 120.00122 * 269.99992 * 10 7 6 12 12 C 1.46500 * 120.00174 * 90.00508 * 10 7 6 13 13 C 1.50696 * 109.47368 * 94.99642 * 12 10 7 14 14 H 1.08001 * 120.00252 * 0.02562 * 13 12 10 15 15 C 1.37882 * 119.99926 * 180.02562 * 13 12 10 16 16 N 1.31513 * 120.00075 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99789 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47119 * 59.99859 * 17 15 13 19 19 H 1.48504 * 109.46820 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47086 * 299.99407 * 17 15 13 21 21 C 1.47425 * 108.55742 * 358.92448 * 6 5 4 22 22 H 1.09002 * 109.46861 * 183.90392 * 1 2 3 23 23 H 1.09002 * 109.47054 * 303.89929 * 1 2 3 24 24 H 1.08998 * 109.47279 * 63.89769 * 1 2 3 25 25 H 1.09002 * 110.72290 * 271.94195 * 4 2 1 26 26 H 1.08997 * 110.72022 * 35.20967 * 4 2 1 27 27 H 1.09004 * 109.88239 * 97.22707 * 5 4 2 28 28 H 1.08995 * 109.88239 * 218.23629 * 5 4 2 29 29 H 1.09004 * 109.47498 * 90.00063 * 11 10 7 30 30 H 1.09002 * 109.47287 * 209.99913 * 11 10 7 31 31 H 1.08999 * 109.47069 * 330.00058 * 11 10 7 32 32 H 1.09005 * 109.47476 * 215.00138 * 12 10 7 33 33 H 1.09005 * 109.46705 * 334.99638 * 12 10 7 34 34 H 0.97000 * 120.00357 * 180.02562 * 16 15 13 35 35 H 1.09002 * 110.36696 * 265.26054 * 21 6 5 36 36 H 1.08995 * 110.36608 * 143.04891 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0862 -0.8079 1.2022 5 6 3.4675 -1.2741 0.6959 6 7 3.4280 -1.2430 -0.7761 7 16 4.6805 -1.6325 -1.7870 8 8 5.5403 -2.4897 -1.0486 9 8 4.0947 -2.0007 -3.0281 10 7 5.5347 -0.2419 -2.0674 11 6 5.1787 0.6214 -3.1962 12 6 6.6464 0.1251 -1.1867 13 6 7.9415 -0.3638 -1.7822 14 1 7.9371 -0.8944 -2.7229 15 6 9.1322 -0.1336 -1.1262 16 7 9.1377 0.5130 0.0190 17 14 10.7377 -0.7390 -1.8647 18 1 10.9359 -0.1148 -3.1975 19 1 11.8646 -0.3671 -0.9719 20 1 10.6889 -2.2159 -2.0120 21 6 2.0852 -0.8066 -1.2003 22 1 -0.3633 -1.0253 0.0700 23 1 -0.3633 0.5732 0.8530 24 1 -0.3634 0.4521 -0.9228 25 1 2.1922 -0.1699 2.0796 26 1 1.4468 -1.6631 1.4210 27 1 4.2427 -0.5997 1.0599 28 1 3.6662 -2.2883 1.0423 29 1 4.4410 1.3561 -2.8734 30 1 6.0701 1.1355 -3.5557 31 1 4.7602 0.0151 -3.9995 32 1 6.6823 1.2093 -1.0792 33 1 6.5009 -0.3324 -0.2081 34 1 9.9754 0.6752 0.4804 35 1 1.4518 -1.6704 -1.4024 36 1 2.1541 -0.1725 -2.0842 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337911097.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:06:20 Heat of formation + Delta-G solvation = -79.220763 kcal Electronic energy + Delta-G solvation = -18975.351377 eV Core-core repulsion = 16007.164903 eV Total energy + Delta-G solvation = -2968.186474 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.52179 -36.59236 -35.45450 -35.11872 -32.43425 -32.41177 -29.44631 -27.75069 -26.03460 -25.01995 -22.41339 -21.94408 -20.39074 -18.47353 -17.31827 -16.83218 -16.35039 -15.97903 -15.25348 -14.43792 -14.11229 -13.66422 -13.57476 -13.41469 -13.09850 -12.95151 -12.64577 -12.26392 -12.14504 -11.91392 -11.59603 -11.45218 -11.20968 -11.14098 -11.05107 -10.97168 -10.73709 -10.68972 -10.64861 -10.48685 -10.02144 -9.76028 -8.77545 -8.42440 -8.03588 -6.05439 -4.09450 1.19560 3.34754 3.37968 3.42804 3.54693 4.13406 4.40378 4.45729 4.63536 4.77890 5.08794 5.28565 5.29614 5.38466 5.42298 5.45927 5.62065 5.67883 5.75204 5.86076 5.88709 6.01132 6.02699 6.07829 6.23082 6.28846 6.43245 6.51290 6.68871 7.23719 7.41666 7.62593 7.92059 8.21651 8.92610 9.55643 11.03182 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.031842 B = 0.006142 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.140873 B = 4557.864065 C = 4795.704244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 H 0.085 0.915 4 C -0.123 4.123 5 C 0.120 3.880 6 N -1.025 6.025 7 S 2.793 3.207 8 O -0.959 6.959 9 O -0.994 6.994 10 N -0.996 5.996 11 C 0.096 3.904 12 C 0.258 3.742 13 C -0.529 4.529 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.897 5.897 17 Si 0.897 3.103 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.128 3.872 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.064 0.936 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.051 1.236 1.027 16.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 H 0.103 0.897 4 C -0.162 4.162 5 C -0.005 4.005 6 N -0.863 5.863 7 S 2.803 3.197 8 O -0.943 6.943 9 O -0.979 6.979 10 N -0.839 5.839 11 C -0.050 4.050 12 C 0.136 3.864 13 C -0.569 4.569 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.536 5.536 17 Si 0.725 3.275 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.200 1.200 21 C 0.002 3.998 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.639 0.414 0.763 15.663 hybrid contribution 0.966 0.163 -0.164 0.993 sum -14.673 0.577 0.599 14.697 Atomic orbital electron populations 1.21702 0.94173 1.02029 1.01913 1.22396 0.95675 0.99689 0.94839 0.89681 1.22701 0.95745 0.99888 0.97876 1.21701 0.97949 1.01593 0.79279 1.59477 1.25357 1.84495 1.16996 1.01617 0.71730 0.73860 0.72494 1.93620 1.64242 1.63450 1.72988 1.93514 1.78907 1.82401 1.43051 1.57703 1.44892 1.42618 1.38653 1.21332 1.00909 0.94301 0.88505 1.19036 0.82344 0.96803 0.88213 1.21461 0.91333 1.36664 1.07416 0.92246 1.24927 0.99237 0.94972 0.94825 1.69907 1.27307 1.41005 1.15354 0.86569 0.82455 0.79588 0.78918 1.20174 1.21147 1.19974 1.21937 0.83205 0.97666 0.97002 0.92424 0.92339 0.92377 0.90297 0.90823 0.91291 0.91351 0.94432 0.90405 0.91673 0.94824 0.94560 0.92638 0.91752 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.30 37.16 0.35 -0.75 16 2 C -0.11 -1.08 3.64 -88.47 -0.32 -1.41 16 3 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 4 C -0.12 -1.29 6.42 -24.90 -0.16 -1.45 16 5 C 0.12 1.73 7.01 -2.92 -0.02 1.71 16 6 N -1.02 -16.68 3.77 -111.22 -0.42 -17.10 16 7 S 2.79 58.26 6.31 -107.50 -0.68 57.58 16 8 O -0.96 -23.77 16.70 -57.17 -0.95 -24.73 16 9 O -0.99 -21.51 16.33 -57.17 -0.93 -22.44 16 10 N -1.00 -21.38 3.23 -123.05 -0.40 -21.78 16 11 C 0.10 1.70 10.68 59.85 0.64 2.34 16 12 C 0.26 6.58 5.08 -5.20 -0.03 6.56 16 13 C -0.53 -15.11 9.38 -34.44 -0.32 -15.43 16 14 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 15 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 16 N -0.90 -26.33 13.29 55.43 0.74 -25.60 16 17 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 21 C 0.13 1.64 6.44 -2.53 -0.02 1.62 16 22 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.68 7.99 -51.93 -0.42 0.26 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 31 H 0.06 1.10 7.02 -51.93 -0.36 0.73 16 32 H 0.03 0.87 8.11 -51.93 -0.42 0.45 16 33 H 0.04 0.98 7.61 -51.93 -0.40 0.58 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.06 0.77 8.04 -51.93 -0.42 0.35 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 310.07 15.07 4.67 4.67 Total: -1.00 -33.60 310.07 -8.75 -42.35 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -5.78 Total: -4.89 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 0.02 Total: -5.10 kcal Atomic # 7 Polarization: -64.40 SS G_CDS: -0.08 Total: -64.48 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -1.89 Total: -47.17 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 58.26 SS G_CDS: -0.68 Total: 57.58 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.60 -8.75 -42.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337911097.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.869 kcal (2) G-P(sol) polarization free energy of solvation -33.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds