Wall clock time and date at job start Mon Mar 30 2020 19:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.91331 * 2 1 4 4 C 1.55154 * 111.00682 * 123.90080 * 2 1 3 5 5 C 1.54325 * 102.94303 * 153.57509 * 4 2 1 6 6 N 1.47290 * 107.30599 * 337.81911 * 5 4 2 7 7 S 1.65600 * 125.79191 * 178.92104 * 6 5 4 8 8 O 1.42102 * 106.39927 * 23.54424 * 7 6 5 9 9 O 1.42099 * 106.39870 * 156.46148 * 7 6 5 10 10 N 1.65590 * 107.21954 * 270.00102 * 7 6 5 11 11 C 1.46498 * 120.00122 * 269.99992 * 10 7 6 12 12 C 1.46500 * 120.00174 * 90.00508 * 10 7 6 13 13 C 1.50696 * 109.47368 * 94.99642 * 12 10 7 14 14 H 1.08001 * 120.00252 * 0.02562 * 13 12 10 15 15 C 1.37882 * 119.99926 * 180.02562 * 13 12 10 16 16 N 1.31513 * 120.00075 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99789 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47119 * 59.99859 * 17 15 13 19 19 H 1.48504 * 109.46820 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47086 * 299.99407 * 17 15 13 21 21 C 1.47425 * 108.55742 * 358.92448 * 6 5 4 22 22 H 1.09002 * 109.46861 * 183.90392 * 1 2 3 23 23 H 1.09002 * 109.47054 * 303.89929 * 1 2 3 24 24 H 1.08998 * 109.47279 * 63.89769 * 1 2 3 25 25 H 1.09002 * 110.72290 * 271.94195 * 4 2 1 26 26 H 1.08997 * 110.72022 * 35.20967 * 4 2 1 27 27 H 1.09004 * 109.88239 * 97.22707 * 5 4 2 28 28 H 1.08995 * 109.88239 * 218.23629 * 5 4 2 29 29 H 1.09004 * 109.47498 * 90.00063 * 11 10 7 30 30 H 1.09002 * 109.47287 * 209.99913 * 11 10 7 31 31 H 1.08999 * 109.47069 * 330.00058 * 11 10 7 32 32 H 1.09005 * 109.47476 * 215.00138 * 12 10 7 33 33 H 1.09005 * 109.46705 * 334.99638 * 12 10 7 34 34 H 0.97000 * 120.00357 * 180.02562 * 16 15 13 35 35 H 1.09002 * 110.36696 * 265.26054 * 21 6 5 36 36 H 1.08995 * 110.36608 * 143.04891 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0862 -0.8079 1.2022 5 6 3.4675 -1.2741 0.6959 6 7 3.4280 -1.2430 -0.7761 7 16 4.6805 -1.6325 -1.7870 8 8 5.5403 -2.4897 -1.0486 9 8 4.0947 -2.0007 -3.0281 10 7 5.5347 -0.2419 -2.0674 11 6 5.1787 0.6214 -3.1962 12 6 6.6464 0.1251 -1.1867 13 6 7.9415 -0.3638 -1.7822 14 1 7.9371 -0.8944 -2.7229 15 6 9.1322 -0.1336 -1.1262 16 7 9.1377 0.5130 0.0190 17 14 10.7377 -0.7390 -1.8647 18 1 10.9359 -0.1148 -3.1975 19 1 11.8646 -0.3671 -0.9719 20 1 10.6889 -2.2159 -2.0120 21 6 2.0852 -0.8066 -1.2003 22 1 -0.3633 -1.0253 0.0700 23 1 -0.3633 0.5732 0.8530 24 1 -0.3634 0.4521 -0.9228 25 1 2.1922 -0.1699 2.0796 26 1 1.4468 -1.6631 1.4210 27 1 4.2427 -0.5997 1.0599 28 1 3.6662 -2.2883 1.0423 29 1 4.4410 1.3561 -2.8734 30 1 6.0701 1.1355 -3.5557 31 1 4.7602 0.0151 -3.9995 32 1 6.6823 1.2093 -1.0792 33 1 6.5009 -0.3324 -0.2081 34 1 9.9754 0.6752 0.4804 35 1 1.4518 -1.6704 -1.4024 36 1 2.1541 -0.1725 -2.0842 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337911097.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:06:19 Heat of formation + Delta-G solvation = -103.469621 kcal Electronic energy + Delta-G solvation = -18976.402886 eV Core-core repulsion = 16007.164903 eV Total energy + Delta-G solvation = -2969.237983 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.55014 -38.34773 -37.24754 -36.89846 -34.53010 -33.40602 -30.46863 -29.68679 -27.01792 -26.68878 -24.27326 -23.18546 -21.24223 -19.97958 -19.01704 -18.48377 -18.28441 -17.35801 -16.85515 -16.28909 -15.36044 -15.14279 -14.94034 -14.57014 -14.46524 -14.09247 -13.99338 -13.82149 -13.60531 -13.37367 -13.22517 -13.07350 -12.96539 -12.69738 -12.52437 -12.50255 -12.37959 -12.00992 -11.88868 -11.78708 -11.53571 -11.48012 -10.62323 -10.05163 -9.79781 -8.22679 -6.35137 -0.42570 1.37857 1.41603 1.48855 2.01261 2.38365 2.56046 3.07951 3.21420 3.59280 3.82608 3.96741 4.10381 4.30390 4.48352 4.53837 4.65438 4.67275 4.74431 4.81605 4.88363 4.97168 5.00961 5.05029 5.14446 5.20134 5.21514 5.34368 5.38728 5.48323 5.57175 5.67447 5.91749 6.07683 6.72459 7.33785 8.84891 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.031842 B = 0.006142 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.140873 B = 4557.864065 C = 4795.704244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.098 4.098 3 H 0.085 0.915 4 C -0.113 4.113 5 C 0.109 3.891 6 N -1.022 6.022 7 S 2.807 3.193 8 O -1.007 7.007 9 O -1.005 7.005 10 N -1.004 6.004 11 C 0.090 3.910 12 C 0.274 3.726 13 C -0.553 4.553 14 H 0.051 0.949 15 C 0.014 3.986 16 N -0.924 5.924 17 Si 0.957 3.043 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.278 1.278 21 C 0.114 3.886 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.027 0.973 33 H 0.014 0.986 34 H 0.268 0.732 35 H 0.075 0.925 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.471 1.807 0.919 17.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.118 4.118 3 H 0.103 0.897 4 C -0.152 4.152 5 C -0.017 4.017 6 N -0.864 5.864 7 S 2.817 3.183 8 O -0.991 6.991 9 O -0.989 6.989 10 N -0.846 5.846 11 C -0.055 4.055 12 C 0.151 3.849 13 C -0.592 4.592 14 H 0.069 0.931 15 C -0.186 4.186 16 N -0.563 5.563 17 Si 0.782 3.218 18 H -0.188 1.188 19 H -0.199 1.199 20 H -0.204 1.204 21 C -0.011 4.011 22 H 0.081 0.919 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.115 0.885 26 H 0.109 0.891 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.032 0.968 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.074 0.997 0.626 17.114 hybrid contribution 1.312 -0.010 -0.120 1.318 sum -15.761 0.986 0.506 15.800 Atomic orbital electron populations 1.21680 0.91838 1.02799 1.02966 1.22399 0.97388 0.99004 0.93036 0.89694 1.22725 0.93121 1.00872 0.98446 1.21941 1.00390 1.01195 0.78131 1.59089 1.25564 1.84264 1.17477 1.00889 0.71782 0.73389 0.72220 1.93551 1.66355 1.65280 1.73927 1.93487 1.78940 1.82610 1.43875 1.57612 1.44533 1.43134 1.39315 1.21555 1.01589 0.94663 0.87736 1.18586 0.82751 0.95810 0.87786 1.21799 0.93058 1.36963 1.07411 0.93117 1.25751 1.02592 0.95031 0.95244 1.69996 1.28368 1.41656 1.16289 0.85626 0.78616 0.78689 0.78902 1.18758 1.19876 1.20350 1.22338 0.81366 0.98754 0.98598 0.91863 0.90953 0.91664 0.88477 0.89065 0.92852 0.91964 0.91071 0.91005 0.90759 0.95457 0.96799 0.92258 0.90640 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.30 71.98 0.67 -0.95 16 2 C -0.10 -1.73 3.64 -9.40 -0.03 -1.77 16 3 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 4 C -0.11 -2.09 6.42 31.78 0.20 -1.88 16 5 C 0.11 3.10 7.01 86.68 0.61 3.71 16 6 N -1.02 -32.82 3.77 -505.79 -1.90 -34.72 16 7 S 2.81 118.52 6.31 -56.49 -0.36 118.17 16 8 O -1.01 -51.68 16.70 -128.00 -2.14 -53.81 16 9 O -1.00 -43.23 16.33 -128.00 -2.09 -45.32 16 10 N -1.00 -43.53 3.23 -543.21 -1.75 -45.28 16 11 C 0.09 3.12 10.68 127.77 1.36 4.48 16 12 C 0.27 14.36 5.08 85.63 0.43 14.80 16 13 C -0.55 -32.17 9.38 25.60 0.24 -31.93 16 14 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 15 C 0.01 0.78 5.46 84.66 0.46 1.24 16 16 N -0.92 -54.80 13.29 21.45 0.28 -54.51 16 17 Si 0.96 45.24 29.54 68.60 2.03 47.26 16 18 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 21 C 0.11 2.70 6.44 86.85 0.56 3.26 16 22 H 0.06 0.71 8.08 -2.39 -0.02 0.69 16 23 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.09 1.40 7.99 -2.39 -0.02 1.38 16 27 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.07 2.56 8.07 -2.39 -0.02 2.54 16 31 H 0.07 2.42 7.02 -2.39 -0.02 2.41 16 32 H 0.03 1.45 8.11 -2.38 -0.02 1.43 16 33 H 0.01 0.79 7.61 -2.38 -0.02 0.77 16 34 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.08 1.63 8.04 -2.39 -0.02 1.62 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -72.73 310.07 -0.38 -73.11 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: 1.04 Total: 4.16 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 4.51 Total: -9.04 kcal Atomic # 7 Polarization: -131.15 SS G_CDS: -3.37 Total: -134.52 kcal Atomic # 8 Polarization: -94.91 SS G_CDS: -4.23 Total: -99.14 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: 118.52 SS G_CDS: -0.36 Total: 118.17 kcal Total: -72.73 -0.38 -73.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337911097.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.361 kcal (2) G-P(sol) polarization free energy of solvation -72.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds