Wall clock time and date at job start Mon Mar 30 2020 19:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30724 * 1 3 3 Si 1.86800 * 120.00438 * 2 1 4 4 H 1.48501 * 109.47279 * 274.98715 * 3 2 1 5 5 H 1.48503 * 109.47092 * 34.98502 * 3 2 1 6 6 H 1.48498 * 109.47329 * 154.98216 * 3 2 1 7 7 C 1.40050 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99692 * 186.25876 * 7 2 1 9 9 C 1.41142 * 120.00053 * 6.26136 * 7 2 1 10 10 N 1.33602 * 119.17113 * 353.24911 * 9 7 2 11 11 C 1.31656 * 120.79291 * 179.76101 * 10 9 7 12 12 C 1.40080 * 119.13733 * 0.49971 * 11 10 9 13 13 N 1.38801 * 120.76161 * 179.77228 * 12 11 10 14 14 C 1.46507 * 119.99852 * 359.97438 * 13 12 11 15 15 C 1.53001 * 109.46995 * 180.02562 * 14 13 12 16 16 H 1.09001 * 110.21531 * 64.29897 * 15 14 13 17 17 C 1.54475 * 110.24259 * 186.22972 * 15 14 13 18 18 C 1.54757 * 101.70447 * 144.36419 * 17 15 14 19 19 C 1.51282 * 104.23265 * 335.30097 * 18 17 15 20 20 O 1.21282 * 124.94244 * 196.21047 * 19 18 17 21 21 N 1.34413 * 110.11481 * 16.19218 * 19 18 17 22 22 C 1.40090 * 118.48427 * 359.75862 * 12 11 10 23 23 N 1.31657 * 119.13213 * 359.97438 * 22 12 11 24 24 H 0.97006 * 119.99619 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.43207 * 180.25577 * 11 10 9 26 26 H 0.96998 * 120.00410 * 179.97438 * 13 12 11 27 27 H 1.09005 * 109.47068 * 299.99919 * 14 13 12 28 28 H 1.08994 * 109.47014 * 59.99887 * 14 13 12 29 29 H 1.09006 * 110.97242 * 262.53546 * 17 15 14 30 30 H 1.08995 * 110.97474 * 26.29421 * 17 15 14 31 31 H 1.09001 * 110.52241 * 216.58876 * 18 17 15 32 32 H 1.09004 * 110.53435 * 94.02292 * 18 17 15 33 33 H 0.97006 * 124.35208 * 180.42555 * 21 19 18 34 34 H 1.07995 * 120.42899 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3835 2.1072 -1.3948 5 1 1.4955 2.6200 0.8028 6 1 3.5876 1.4119 0.5921 7 6 2.0075 -1.2129 0.0005 8 1 3.0827 -1.2156 0.1025 9 6 1.3080 -2.4316 -0.1322 10 7 -0.0279 -2.4204 -0.1206 11 6 -0.7124 -3.5379 -0.2467 12 6 -0.0219 -4.7489 -0.3838 13 7 -0.7097 -5.9475 -0.5143 14 6 -2.1748 -5.9556 -0.5092 15 6 -2.6773 -7.3921 -0.6664 16 1 -2.3783 -7.9919 0.1933 17 6 -4.2144 -7.4069 -0.8200 18 6 -4.4191 -8.5726 -1.8170 19 6 -3.1080 -8.6548 -2.5674 20 8 -2.9431 -9.2426 -3.6153 21 7 -2.1526 -7.9812 -1.9039 22 6 1.3787 -4.7228 -0.3863 23 7 1.9985 -3.5680 -0.2612 24 1 -0.4850 0.8401 -0.0004 25 1 -1.7923 -3.5215 -0.2407 26 1 -0.2205 -6.7796 -0.6089 27 1 -2.5371 -5.5453 0.4334 28 1 -2.5443 -5.3485 -1.3356 29 1 -4.6997 -7.6172 0.1332 30 1 -4.5735 -6.4673 -1.2397 31 1 -5.2373 -8.3504 -2.5020 32 1 -4.6119 -9.5031 -1.2830 33 1 -1.2343 -7.8953 -2.2045 34 1 1.9426 -5.6379 -0.4905 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164166607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:04:06 Heat of formation + Delta-G solvation = 14.993759 kcal Electronic energy + Delta-G solvation = -18706.689159 eV Core-core repulsion = 15639.436933 eV Total energy + Delta-G solvation = -3067.252226 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.117 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.51395 -39.00018 -37.12693 -35.05843 -33.37928 -31.76782 -31.49501 -30.21851 -28.20367 -25.53338 -24.10530 -22.80869 -21.47353 -21.20269 -20.46635 -17.87514 -17.53669 -16.94995 -16.19399 -15.63165 -15.25020 -14.97805 -14.40693 -14.23141 -14.17393 -13.69797 -13.23820 -12.95475 -12.83280 -12.64232 -12.39987 -11.87384 -11.61669 -11.33326 -11.24369 -11.22201 -10.60575 -10.21892 -10.03363 -9.87649 -9.43551 -9.26839 -9.22551 -8.96128 -7.30391 -6.85904 -6.45489 -4.41689 2.44945 2.69580 2.87015 3.11206 3.15819 3.16566 3.19300 3.86887 3.97451 4.19584 4.28396 4.56169 4.72805 4.85207 4.95301 5.11914 5.38683 5.47540 5.63701 5.70863 5.75437 5.86564 5.93287 5.97228 6.22769 6.39597 6.63933 6.87295 7.04586 7.10519 7.32487 8.02759 8.10145 8.23746 8.38240 8.53052 8.71109 9.17266 10.19927 10.35896 Molecular weight = 262.12amu Principal moments of inertia in cm(-1) A = 0.043743 B = 0.003692 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.950897 B = 7582.093181 C = 7856.436728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.725 5.725 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.413 4.413 8 H 0.089 0.911 9 C 0.370 3.630 10 N -0.477 5.477 11 C 0.104 3.896 12 C -0.045 4.045 13 N -0.753 5.753 14 C 0.130 3.870 15 C 0.121 3.879 16 H 0.087 0.913 17 C -0.126 4.126 18 C -0.156 4.156 19 C 0.518 3.482 20 O -0.541 6.541 21 N -0.722 5.722 22 C 0.105 3.895 23 N -0.567 5.567 24 H 0.272 0.728 25 H 0.125 0.875 26 H 0.383 0.617 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.412 0.588 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.261 -10.832 1.198 14.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.349 5.349 2 C -0.156 4.156 3 Si 0.739 3.261 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.450 4.450 8 H 0.107 0.893 9 C 0.129 3.871 10 N -0.194 5.194 11 C -0.073 4.073 12 C -0.149 4.149 13 N -0.392 5.392 14 C 0.004 3.996 15 C 0.015 3.985 16 H 0.105 0.895 17 C -0.165 4.165 18 C -0.196 4.196 19 C 0.304 3.696 20 O -0.418 6.418 21 N -0.378 5.378 22 C -0.069 4.069 23 N -0.285 5.285 24 H 0.083 0.917 25 H 0.143 0.857 26 H 0.216 0.784 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.251 0.749 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.120 -9.962 0.824 13.532 hybrid contribution 0.372 -0.423 -0.207 0.600 sum -8.749 -10.385 0.617 13.593 Atomic orbital electron populations 1.70142 1.07167 1.27718 1.29832 1.26006 0.94930 1.01082 0.93593 0.86197 0.80467 0.80440 0.79002 1.19531 1.20180 1.18437 1.19115 0.94940 0.87824 1.43119 0.89272 1.19807 0.85524 0.90757 0.90983 1.69279 1.08635 1.25432 1.16025 1.22670 0.98920 0.87472 0.98247 1.19141 0.93469 0.87764 1.14549 1.43419 1.02937 1.05732 1.87084 1.21410 0.82916 0.93906 1.01375 1.21976 0.94326 0.94910 0.87274 0.89510 1.22673 0.93839 0.99344 1.00603 1.22363 0.96977 1.00813 0.99451 1.20910 0.87188 0.77414 0.84096 1.90757 1.84171 1.44433 1.22479 1.46359 1.13366 1.53915 1.24169 1.22189 0.89176 0.96352 0.99202 1.68559 1.40503 0.98416 1.21060 0.91713 0.85722 0.78426 0.91808 0.92608 0.88761 0.89312 0.87988 0.87835 0.74895 0.85708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.25 11.44 55.55 0.64 -18.62 16 2 C 0.07 1.77 5.49 -17.34 -0.10 1.68 16 3 Si 0.91 18.87 29.56 -169.99 -5.03 13.85 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.41 -11.48 9.35 -37.80 -0.35 -11.83 16 8 H 0.09 2.40 7.85 -52.48 -0.41 1.99 16 9 C 0.37 10.45 7.35 -158.23 -1.16 9.29 16 10 N -0.48 -13.01 7.87 -12.49 -0.10 -13.11 16 11 C 0.10 2.37 10.58 -16.94 -0.18 2.19 16 12 C -0.04 -0.91 6.72 -83.32 -0.56 -1.47 16 13 N -0.75 -10.99 5.48 -58.22 -0.32 -11.31 16 14 C 0.13 1.51 4.59 -4.04 -0.02 1.49 16 15 C 0.12 1.02 3.63 -67.02 -0.24 0.78 16 16 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 17 C -0.13 -0.80 6.70 -25.03 -0.17 -0.97 16 18 C -0.16 -1.17 6.86 -26.67 -0.18 -1.35 16 19 C 0.52 6.11 8.43 -10.86 -0.09 6.02 16 20 O -0.54 -8.83 18.03 5.56 0.10 -8.73 16 21 N -0.72 -7.45 5.72 -52.77 -0.30 -7.75 16 22 C 0.11 2.32 11.20 -16.93 -0.19 2.13 16 23 N -0.57 -14.89 10.34 -12.49 -0.13 -15.02 16 24 H 0.27 6.51 8.29 -40.82 -0.34 6.17 16 25 H 0.13 2.51 6.88 -52.49 -0.36 2.14 16 26 H 0.38 4.84 7.83 -40.82 -0.32 4.52 16 27 H 0.06 0.73 7.99 -51.93 -0.41 0.32 16 28 H 0.06 0.71 7.91 -51.93 -0.41 0.30 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.57 7.86 -51.93 -0.41 0.16 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.41 4.40 8.21 -40.82 -0.34 4.07 16 34 H 0.13 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 294.11 15.07 4.43 4.43 Total: -1.00 -33.35 294.11 -7.86 -41.21 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -3.91 Total: 7.09 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -3.24 Total: 7.95 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: -0.21 Total: -65.80 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.10 Total: -8.73 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.35 -7.86 -41.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164166607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.208 kcal (2) G-P(sol) polarization free energy of solvation -33.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds