Wall clock time and date at job start Mon Mar 30 2020 19:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.47436 * 2 1 4 4 C 1.38261 * 119.99860 * 270.02334 * 3 2 1 5 5 C 1.38213 * 119.99642 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.00166 * 359.81205 * 5 4 3 7 7 C 1.38211 * 120.00116 * 0.41934 * 6 5 4 8 8 C 1.50699 * 120.00293 * 179.80832 * 7 6 5 9 9 O 1.45201 * 109.47456 * 269.73102 * 8 7 6 10 10 C 1.34228 * 116.99993 * 179.97438 * 9 8 7 11 11 O 1.20825 * 120.00238 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99651 * 179.97438 * 10 9 8 13 13 H 1.09004 * 109.47220 * 299.99699 * 12 10 9 14 14 C 1.53000 * 109.47112 * 60.00053 * 12 10 9 15 15 C 1.50703 * 109.46927 * 180.02562 * 12 10 9 16 16 H 1.07999 * 120.00152 * 354.34994 * 15 12 10 17 17 C 1.37879 * 119.99898 * 174.35793 * 15 12 10 18 18 N 1.31507 * 119.99939 * 156.51722 * 17 15 12 19 19 Si 1.86800 * 119.99920 * 336.79832 * 17 15 12 20 20 H 1.48500 * 109.47295 * 179.72490 * 19 17 15 21 21 H 1.48504 * 109.47219 * 299.72276 * 19 17 15 22 22 H 1.48507 * 109.47298 * 59.72421 * 19 17 15 23 23 C 1.38216 * 119.99963 * 89.99653 * 3 2 1 24 24 H 1.08999 * 109.47155 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.47155 * 299.99933 * 1 2 3 26 26 H 1.09000 * 109.47330 * 59.99555 * 1 2 3 27 27 H 1.08999 * 109.47361 * 240.00036 * 2 1 3 28 28 H 1.09005 * 109.47266 * 119.99979 * 2 1 3 29 29 H 1.07996 * 120.00307 * 0.02562 * 4 3 2 30 30 H 1.08005 * 120.00066 * 180.02562 * 5 4 3 31 31 H 1.08009 * 120.00050 * 180.23141 * 6 5 4 32 32 H 1.08999 * 109.47447 * 149.72517 * 8 7 6 33 33 H 1.09006 * 109.47273 * 29.72705 * 8 7 6 34 34 H 1.08999 * 109.47261 * 173.11949 * 14 12 10 35 35 H 1.09007 * 109.46646 * 293.11218 * 14 12 10 36 36 H 1.08994 * 109.47507 * 53.11024 * 14 12 10 37 37 H 0.96999 * 120.00644 * 355.21451 * 18 17 15 38 38 H 1.08000 * 120.00094 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2624 2.0727 -1.1974 5 6 2.7226 3.3759 -1.1973 6 6 2.9493 4.0289 0.0000 7 6 2.7240 3.3757 1.1969 8 6 2.9752 4.0860 2.5020 9 8 4.3464 3.8575 2.9214 10 6 4.7341 4.4266 4.0736 11 8 3.9538 5.0939 4.7105 12 6 6.1428 4.2330 4.5729 13 1 6.3307 3.1705 4.7277 14 6 7.1298 4.7804 3.5398 15 6 6.3194 4.9689 5.8762 16 1 5.5250 5.5951 6.2546 17 6 7.4950 4.8427 6.5853 18 7 7.8558 5.7815 7.4326 19 14 8.5793 3.3420 6.3367 20 1 9.7792 3.4489 7.2049 21 1 7.8185 2.1172 6.6924 22 1 9.0020 3.2667 4.9151 23 6 2.2627 2.0723 1.1970 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.0816 1.5639 -2.1327 30 1 2.9019 3.8853 -2.1327 31 1 3.3055 5.0486 0.0000 32 1 2.2942 3.7022 3.2616 33 1 2.8086 5.1554 2.3717 34 1 8.1388 4.7527 3.9510 35 1 7.0880 4.1693 2.6381 36 1 6.8656 5.8089 3.2942 37 1 7.3318 6.5942 7.5081 38 1 2.0830 1.5631 2.1323 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348035607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:05:27 Heat of formation + Delta-G solvation = -84.417517 kcal Electronic energy + Delta-G solvation = -18979.438651 eV Core-core repulsion = 15979.123221 eV Total energy + Delta-G solvation = -3000.315430 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.98285 -39.26232 -35.96462 -34.36938 -33.92184 -31.94551 -31.12117 -29.62403 -26.57413 -24.88554 -24.12496 -23.02898 -21.98651 -20.41256 -19.64962 -17.46666 -16.75922 -16.58389 -16.15738 -15.71856 -15.17549 -14.89713 -14.04112 -13.82276 -13.74461 -13.35012 -13.28085 -12.96868 -12.58987 -12.39496 -12.15230 -11.97201 -11.84364 -11.45992 -11.38265 -11.17701 -10.97111 -10.92709 -10.53719 -10.27548 -10.13857 -9.87032 -9.38468 -9.00821 -8.90596 -8.74767 -8.22892 -6.55137 -4.11839 1.13935 1.28336 3.16855 3.29645 3.36921 3.41755 3.58832 3.89881 4.46393 4.52560 4.61381 4.77275 4.95279 5.01250 5.11597 5.15323 5.19707 5.28877 5.36551 5.50520 5.52435 5.66819 5.67013 5.87999 5.92576 5.97304 6.00771 6.22755 6.33694 6.45276 6.45494 6.52369 6.53254 6.85904 6.88142 7.09707 7.22888 7.82450 8.39426 8.74435 8.94241 9.54167 10.85179 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.029736 B = 0.004021 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.396863 B = 6961.984309 C = 7156.398091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.087 4.087 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.101 4.101 7 C -0.082 4.082 8 C 0.102 3.898 9 O -0.362 6.362 10 C 0.470 3.530 11 O -0.508 6.508 12 C 0.035 3.965 13 H 0.055 0.945 14 C -0.140 4.140 15 C -0.608 4.608 16 H 0.077 0.923 17 C 0.041 3.959 18 N -0.891 5.891 19 Si 1.032 2.968 20 H -0.282 1.282 21 H -0.281 1.281 22 H -0.274 1.274 23 C -0.095 4.095 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.037 0.963 36 H 0.046 0.954 37 H 0.272 0.728 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.176 -9.756 -18.120 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.132 4.132 5 C -0.138 4.138 6 C -0.119 4.119 7 C -0.083 4.083 8 C 0.028 3.972 9 O -0.280 6.280 10 C 0.314 3.686 11 O -0.394 6.394 12 C 0.015 3.985 13 H 0.072 0.928 14 C -0.198 4.198 15 C -0.645 4.645 16 H 0.095 0.905 17 C -0.165 4.165 18 N -0.523 5.523 19 Si 0.859 3.141 20 H -0.207 1.207 21 H -0.207 1.207 22 H -0.200 1.200 23 C -0.113 4.113 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.061 -10.261 -17.374 22.547 hybrid contribution -1.585 0.919 -0.492 1.897 sum -11.646 -9.342 -17.865 23.282 Atomic orbital electron populations 1.21752 0.94758 1.01661 1.02228 1.20542 0.96129 0.92582 1.02982 1.19871 0.99527 0.96316 0.93009 1.21034 0.99812 0.94950 0.97411 1.21102 0.99912 0.94976 0.97858 1.21095 0.98771 1.00259 0.91824 1.19607 1.00005 0.94703 0.93943 1.21641 0.82817 0.99780 0.92955 1.86679 1.29803 1.70185 1.41357 1.24822 0.92138 0.75054 0.76573 1.90523 1.54953 1.37456 1.56464 1.19038 0.83691 0.99215 0.96569 0.92767 1.22073 1.00260 1.00132 0.97290 1.21912 1.04494 1.32650 1.05451 0.90524 1.25701 0.96006 1.01244 0.93578 1.70830 1.38119 1.06477 1.36916 0.84221 0.76792 0.76214 0.76891 1.20712 1.20731 1.19974 1.20973 0.98689 0.93718 0.97889 0.92416 0.92479 0.92634 0.91031 0.90860 0.86178 0.85899 0.85835 0.90907 0.90893 0.91755 0.94403 0.93485 0.91788 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 37.16 0.37 -0.71 16 2 C -0.09 -0.71 6.06 -27.89 -0.17 -0.88 16 3 C -0.09 -0.93 5.13 -104.62 -0.54 -1.47 16 4 C -0.11 -1.14 9.70 -39.58 -0.38 -1.53 16 5 C -0.12 -1.26 10.05 -39.59 -0.40 -1.66 16 6 C -0.10 -1.25 9.70 -39.59 -0.38 -1.64 16 7 C -0.08 -1.14 5.52 -104.63 -0.58 -1.72 16 8 C 0.10 1.66 5.59 36.01 0.20 1.86 16 9 O -0.36 -7.16 10.13 -39.25 -0.40 -7.56 16 10 C 0.47 11.03 7.24 36.01 0.26 11.29 16 11 O -0.51 -13.22 15.22 -18.75 -0.29 -13.51 16 12 C 0.03 0.85 2.34 -92.92 -0.22 0.63 16 13 H 0.05 1.28 6.71 -51.93 -0.35 0.93 16 14 C -0.14 -3.06 8.85 37.16 0.33 -2.73 16 15 C -0.61 -17.56 8.57 -34.44 -0.30 -17.86 16 16 H 0.08 2.48 7.02 -52.49 -0.37 2.11 16 17 C 0.04 1.19 5.19 -17.82 -0.09 1.10 16 18 N -0.89 -27.21 13.70 55.43 0.76 -26.45 16 19 Si 1.03 24.34 26.45 -169.99 -4.50 19.84 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.27 -5.88 6.15 56.52 0.35 -5.53 16 23 C -0.09 -1.18 9.36 -39.58 -0.37 -1.55 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 28 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 29 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 31 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 33 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 34 H 0.06 1.43 5.48 -51.93 -0.28 1.14 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 37 H 0.27 8.34 8.73 -40.82 -0.36 7.99 16 38 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 322.27 15.07 4.86 4.86 Total: -1.00 -32.11 322.27 -7.52 -39.63 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -5.69 Total: 0.06 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -2.27 Total: -16.87 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.76 Total: -26.45 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.68 Total: -21.07 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -4.50 Total: 19.84 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.11 -7.52 -39.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348035607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.792 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds