Wall clock time and date at job start Mon Mar 30 2020 19:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00226 * 2 1 4 4 H 1.48499 * 109.47095 * 359.97438 * 3 2 1 5 5 H 1.48492 * 109.47358 * 119.99696 * 3 2 1 6 6 H 1.48507 * 109.47111 * 240.00045 * 3 2 1 7 7 C 1.38815 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00204 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00007 * 359.97438 * 7 2 1 10 10 C 1.47431 * 125.65142 * 359.69911 * 9 7 2 11 11 C 1.55126 * 104.72439 * 155.81487 * 10 9 7 12 12 C 1.55151 * 101.48661 * 37.29345 * 11 10 9 13 13 H 1.08992 * 110.87570 * 82.77061 * 12 11 10 14 14 O 1.42906 * 110.71603 * 205.97078 * 12 11 10 15 15 C 1.35905 * 116.99406 * 198.49612 * 14 12 11 16 16 C 1.38751 * 120.06187 * 354.66072 * 15 14 12 17 17 C 1.38120 * 119.94496 * 180.02562 * 16 15 14 18 18 C 1.38281 * 120.05786 * 0.02562 * 17 16 15 19 19 C 1.38248 * 120.11021 * 359.97438 * 18 17 16 20 20 C 1.50700 * 119.97020 * 179.97438 * 19 18 17 21 21 N 1.46908 * 109.47090 * 90.00489 * 20 19 18 22 22 C 1.38167 * 120.05715 * 359.68853 * 19 18 17 23 23 C 1.47027 * 125.64802 * 179.97438 * 9 7 2 24 24 H 0.97000 * 119.99836 * 0.02562 * 1 2 3 25 25 H 1.09003 * 110.35934 * 274.74379 * 10 9 7 26 26 H 1.08994 * 110.36440 * 37.05941 * 10 9 7 27 27 H 1.08999 * 111.18901 * 279.18798 * 11 10 9 28 28 H 1.08997 * 110.93612 * 155.29292 * 11 10 9 29 29 H 1.08003 * 120.02402 * 0.02562 * 16 15 14 30 30 H 1.08006 * 119.96579 * 179.97438 * 17 16 15 31 31 H 1.07998 * 119.94747 * 179.97438 * 18 17 16 32 32 H 1.09000 * 109.47170 * 209.99869 * 20 19 18 33 33 H 1.08997 * 109.47433 * 330.00432 * 20 19 18 34 34 H 1.00894 * 110.99938 * 56.04363 * 21 20 19 35 35 H 1.00892 * 111.00376 * 180.02562 * 21 20 19 36 36 H 1.07994 * 120.02978 * 180.29868 * 22 19 18 37 37 H 1.08989 * 109.88430 * 300.44534 * 23 9 7 38 38 H 1.09006 * 109.87666 * 61.61364 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1039 1.6963 1.2125 6 1 3.1040 1.6963 -1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 -0.1416 -2.5332 0.0086 11 6 -0.4023 -3.9328 -0.6076 12 6 0.7782 -4.7524 -0.0230 13 1 0.5487 -5.0997 0.9843 14 8 1.0994 -5.8542 -0.8746 15 6 1.8260 -6.8646 -0.3286 16 6 2.3161 -6.7484 0.9642 17 6 3.0547 -7.7765 1.5165 18 6 3.3064 -8.9207 0.7820 19 6 2.8192 -9.0390 -0.5064 20 6 3.0959 -10.2872 -1.3042 21 7 2.0240 -11.2645 -1.0718 22 6 2.0739 -8.0163 -1.0610 23 6 1.9317 -3.7275 0.0017 24 1 -0.4850 0.8401 -0.0004 25 1 -0.5223 -2.4884 1.0290 26 1 -0.6024 -1.7579 -0.6035 27 1 -0.3537 -3.8994 -1.6960 28 1 -1.3594 -4.3333 -0.2735 29 1 2.1202 -5.8547 1.5381 30 1 3.4368 -7.6862 2.5227 31 1 3.8845 -9.7234 1.2155 32 1 3.1372 -10.0388 -2.3647 33 1 4.0497 -10.7132 -0.9933 34 1 1.1215 -10.8706 -1.2917 35 1 2.1867 -12.1112 -1.5958 36 1 1.6894 -8.1112 -2.0657 37 1 2.5570 -3.8515 -0.8823 38 1 2.5292 -3.8638 0.9032 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218320708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:07:17 Heat of formation + Delta-G solvation = 15.533493 kcal Electronic energy + Delta-G solvation = -19289.945707 eV Core-core repulsion = 16326.257229 eV Total energy + Delta-G solvation = -2963.688478 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.12752 -38.15721 -36.22790 -34.62263 -32.36533 -30.67869 -29.92016 -29.05631 -27.37957 -25.09952 -24.52148 -22.41675 -21.61502 -20.26797 -19.74400 -17.80470 -17.04791 -16.19014 -15.94644 -15.59291 -15.16128 -14.81672 -14.58942 -14.27405 -13.78679 -13.61136 -13.26492 -12.68582 -12.57800 -12.32851 -11.95600 -11.78348 -11.55664 -11.39042 -11.04635 -10.90229 -10.75818 -10.43846 -10.24557 -10.07662 -9.84032 -9.62787 -9.07851 -8.76818 -8.70365 -7.99386 -6.90922 -5.70262 -3.12861 1.34245 1.57070 3.38865 3.42233 3.43759 3.48761 3.79697 4.45681 4.51585 4.68977 4.86842 5.04586 5.19087 5.22601 5.31606 5.37680 5.42357 5.44677 5.55165 5.62901 5.65041 5.78303 6.05870 6.24326 6.36177 6.42426 6.46742 6.49542 6.59437 6.61594 6.62607 6.80393 6.93749 7.15035 7.40616 7.56628 7.71863 7.80585 8.29326 9.16122 9.76390 10.39704 11.33892 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.042379 B = 0.003864 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.546123 B = 7245.148000 C = 7524.566133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.918 3.082 4 H -0.289 1.289 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.152 3.848 11 C -0.135 4.135 12 C 0.070 3.930 13 H 0.076 0.924 14 O -0.306 6.306 15 C 0.141 3.859 16 C -0.205 4.205 17 C -0.081 4.081 18 C -0.145 4.145 19 C -0.054 4.054 20 C 0.103 3.897 21 N -0.846 5.846 22 C -0.155 4.155 23 C 0.118 3.882 24 H 0.254 0.746 25 H 0.017 0.983 26 H 0.115 0.885 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.132 0.868 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.344 0.656 35 H 0.341 0.659 36 H 0.124 0.876 37 H 0.035 0.965 38 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.988 -18.450 -0.953 18.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.748 3.252 4 H -0.215 1.215 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.027 3.973 11 C -0.173 4.173 12 C 0.014 3.986 13 H 0.094 0.906 14 O -0.219 6.219 15 C 0.095 3.905 16 C -0.224 4.224 17 C -0.099 4.099 18 C -0.164 4.164 19 C -0.054 4.054 20 C -0.027 4.027 21 N -0.376 5.376 22 C -0.174 4.174 23 C -0.008 4.008 24 H 0.065 0.935 25 H 0.035 0.965 26 H 0.132 0.868 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.150 0.850 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.142 0.858 37 H 0.053 0.947 38 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.111 -18.173 -0.401 18.441 hybrid contribution 0.379 1.010 -0.672 1.271 sum 3.490 -17.162 -1.072 17.546 Atomic orbital electron populations 1.69738 1.04930 1.25078 1.57443 1.24799 0.95767 0.97785 1.02186 0.86105 0.78393 0.82765 0.77955 1.21480 1.21144 1.21071 1.19046 0.90561 0.82250 1.43444 0.90414 1.44381 1.01907 0.99457 1.87098 1.22063 0.84845 0.91883 0.98475 1.23224 0.94829 0.97686 1.01581 1.23667 0.97453 0.84238 0.93254 0.90603 1.86154 1.67112 1.28265 1.40321 1.19041 0.91370 0.88251 0.91829 1.21466 1.03618 1.01527 0.95782 1.20937 0.96627 0.92848 0.99460 1.20815 1.03192 0.98207 0.94185 1.19453 0.96958 0.94272 0.94728 1.20678 0.95508 0.89967 0.96523 1.58700 1.05284 1.07915 1.65733 1.20238 1.03942 0.92406 1.00813 1.21742 0.93877 0.86486 0.98736 0.93523 0.96529 0.86765 0.90786 0.91504 0.85006 0.85925 0.86216 0.94534 0.90109 0.84344 0.84597 0.85819 0.94727 0.95650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.75 10.08 55.49 0.56 -26.19 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 3 Si 0.92 22.06 29.55 -169.99 -5.02 17.03 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.22 -6.34 10.27 -15.06 -0.15 -6.49 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.69 3.39 -169.93 -0.58 -16.26 16 10 C 0.15 3.69 5.91 -2.41 -0.01 3.68 16 11 C -0.13 -2.64 6.82 -24.47 -0.17 -2.81 16 12 C 0.07 1.32 2.77 -24.90 -0.07 1.25 16 13 H 0.08 1.33 6.58 -51.93 -0.34 0.99 16 14 O -0.31 -5.50 9.88 -19.44 -0.19 -5.69 16 15 C 0.14 2.25 6.63 -39.22 -0.26 1.99 16 16 C -0.21 -3.07 8.77 -39.44 -0.35 -3.41 16 17 C -0.08 -1.03 10.04 -39.61 -0.40 -1.43 16 18 C -0.15 -1.75 9.70 -39.56 -0.38 -2.13 16 19 C -0.05 -0.64 5.39 -104.64 -0.56 -1.21 16 20 C 0.10 0.95 6.91 -4.97 -0.03 0.92 16 21 N -0.85 -7.12 9.61 -11.40 -0.11 -7.23 16 22 C -0.15 -2.13 9.64 -39.43 -0.38 -2.51 16 23 C 0.12 2.58 6.51 -3.06 -0.02 2.56 16 24 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.11 3.09 5.85 -51.93 -0.30 2.79 16 27 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.13 2.01 5.31 -52.48 -0.28 1.73 16 30 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 31 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.04 0.31 8.09 -51.93 -0.42 -0.11 16 33 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 34 H 0.34 2.83 8.98 -39.30 -0.35 2.48 16 35 H 0.34 2.07 9.08 -39.30 -0.36 1.72 16 36 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 37 H 0.03 0.79 8.05 -51.94 -0.42 0.37 16 38 H 0.03 0.54 7.43 -51.93 -0.39 0.16 16 LS Contribution 310.89 15.07 4.69 4.69 Total: -1.00 -30.56 310.89 -8.90 -39.46 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.36 Total: 4.17 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -2.89 Total: -9.97 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: -0.13 Total: -49.69 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.19 Total: -5.69 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.56 -8.90 -39.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218320708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.998 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds