Wall clock time and date at job start Mon Mar 30 2020 19:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47405 * 2 1 4 4 N 1.46904 * 109.47481 * 119.99850 * 2 1 3 5 5 C 1.46897 * 111.00123 * 183.95247 * 4 2 1 6 6 C 1.39626 * 110.99212 * 60.00182 * 4 2 1 7 7 C 1.38765 * 120.12475 * 60.28285 * 6 4 2 8 8 C 1.38176 * 120.00495 * 180.25097 * 7 6 4 9 9 C 1.38465 * 120.25053 * 359.74247 * 8 7 6 10 10 C 1.38080 * 120.24740 * 359.97438 * 9 8 7 11 11 C 1.38918 * 119.99098 * 0.02600 * 10 9 8 12 12 N 1.39475 * 120.12662 * 179.97438 * 11 10 9 13 13 C 1.34772 * 120.00305 * 335.15530 * 12 11 10 14 14 O 1.21792 * 119.99880 * 354.47175 * 13 12 11 15 15 C 1.41717 * 120.00485 * 174.19548 * 13 12 11 16 16 H 1.08007 * 120.00006 * 0.27303 * 15 13 12 17 17 C 1.40142 * 120.00198 * 180.27399 * 15 13 12 18 18 N 1.30626 * 120.00117 * 0.02562 * 17 15 13 19 19 Si 1.86809 * 120.00028 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46979 * 60.00115 * 19 17 15 21 21 H 1.48497 * 109.46855 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46793 * 300.00103 * 19 17 15 23 23 H 1.09000 * 109.47090 * 299.99769 * 1 2 3 24 24 H 1.08998 * 109.46714 * 59.99980 * 1 2 3 25 25 H 1.08997 * 109.46744 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47555 * 239.99973 * 2 1 3 27 27 H 1.08992 * 109.47378 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47126 * 300.00496 * 3 2 1 29 29 H 1.09001 * 109.46786 * 59.99502 * 3 2 1 30 30 H 1.08996 * 109.47339 * 296.04811 * 5 4 2 31 31 H 1.09004 * 109.46826 * 56.05192 * 5 4 2 32 32 H 1.09004 * 109.47089 * 176.04455 * 5 4 2 33 33 H 1.07991 * 119.99627 * 359.96861 * 7 6 4 34 34 H 1.08001 * 119.87191 * 179.75892 * 8 7 6 35 35 H 1.08004 * 119.87027 * 180.02562 * 9 8 7 36 36 H 1.08006 * 120.00291 * 180.02562 * 10 9 8 37 37 H 0.97002 * 120.00183 * 155.15390 * 12 11 10 38 38 H 0.97002 * 120.00269 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4851 -0.6307 1.2816 6 6 1.5720 -2.0146 1.2316 7 6 1.9141 -2.8907 0.2113 8 6 1.4654 -4.1972 0.2430 9 6 0.6785 -4.6392 1.2930 10 6 0.3367 -3.7779 2.3167 11 6 0.7822 -2.4623 2.2951 12 7 0.4382 -1.5897 3.3273 13 6 -0.6752 -1.8108 4.0537 14 8 -1.4340 -2.7125 3.7461 15 6 -0.9603 -0.9979 5.1790 16 1 -0.2875 -0.1983 5.4520 17 6 -2.1152 -1.2315 5.9378 18 7 -2.9287 -2.1989 5.6081 19 14 -2.4913 -0.1595 7.4207 20 1 -2.6264 1.2545 6.9877 21 1 -3.7601 -0.6092 8.0475 22 1 -1.3858 -0.2720 8.4059 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9564 0.8900 30 1 3.9192 -1.1674 0.4380 31 1 3.8069 0.4104 1.2544 32 1 3.8165 -1.0892 2.2133 33 1 2.5274 -2.5502 -0.6098 34 1 1.7298 -4.8762 -0.5542 35 1 0.3314 -5.6618 1.3118 36 1 -0.2770 -4.1270 3.1340 37 1 1.0003 -0.8236 3.5224 38 1 -3.7279 -2.3608 6.1334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408523708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:07:46 Heat of formation + Delta-G solvation = -1.801256 kcal Electronic energy + Delta-G solvation = -20201.090044 eV Core-core repulsion = 17236.649875 eV Total energy + Delta-G solvation = -2964.440169 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.86263 -37.73406 -36.32417 -33.41809 -32.42718 -31.94108 -29.42078 -28.89512 -27.00978 -26.18550 -24.83081 -22.49902 -21.52796 -19.72336 -19.49908 -17.44734 -16.69445 -15.86974 -15.53779 -15.26498 -14.75072 -14.30771 -13.99997 -13.82515 -13.29407 -12.91192 -12.59773 -12.51741 -12.34190 -12.03811 -11.97439 -11.62899 -11.42235 -11.31355 -11.12472 -11.04945 -10.87321 -10.83005 -10.57500 -10.44989 -10.33089 -9.32515 -8.84046 -8.20435 -8.12822 -7.58983 -6.81671 -6.33325 -4.85897 1.95178 2.17364 3.09082 3.14174 3.16148 4.00696 4.09547 4.28994 4.59469 4.82793 5.10784 5.15673 5.41897 5.49591 5.51072 5.57983 5.67558 5.77513 5.79268 5.86324 5.92409 6.02180 6.05419 6.14832 6.24531 6.39021 6.44448 6.62457 6.65834 6.93891 6.99341 7.25192 7.26422 7.27225 7.54505 7.77632 7.95974 8.13505 8.37677 8.83643 9.39198 10.41817 10.63504 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020551 B = 0.006505 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.145608 B = 4303.592242 C = 5148.837844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.086 3.914 3 C -0.147 4.147 4 N -0.492 5.492 5 C 0.026 3.974 6 C 0.016 3.984 7 C -0.126 4.126 8 C -0.170 4.170 9 C -0.101 4.101 10 C -0.142 4.142 11 C 0.225 3.775 12 N -0.681 5.681 13 C 0.543 3.457 14 O -0.568 6.568 15 C -0.536 4.536 16 H 0.069 0.931 17 C 0.089 3.911 18 N -0.748 5.748 19 Si 0.911 3.089 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.266 1.266 23 H 0.065 0.935 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.037 0.963 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.024 0.976 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.154 0.846 37 H 0.398 0.602 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.450 3.395 -8.333 13.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.021 4.021 3 C -0.205 4.205 4 N -0.214 5.214 5 C -0.121 4.121 6 C -0.082 4.082 7 C -0.147 4.147 8 C -0.190 4.190 9 C -0.120 4.120 10 C -0.164 4.164 11 C 0.122 3.878 12 N -0.321 5.321 13 C 0.353 3.647 14 O -0.452 6.452 15 C -0.572 4.572 16 H 0.087 0.913 17 C -0.134 4.134 18 N -0.376 5.376 19 Si 0.735 3.265 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.191 1.191 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.171 0.829 37 H 0.232 0.768 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.480 2.991 -7.967 12.014 hybrid contribution 0.459 0.505 -0.009 0.682 sum 8.939 3.496 -7.976 12.479 Atomic orbital electron populations 1.21779 0.93876 1.02667 1.01660 1.21616 0.96184 0.94104 0.90192 1.21937 1.00630 0.95631 1.02260 1.59404 1.09723 1.12585 1.39660 1.22482 0.87093 1.01572 1.00933 1.18330 1.05543 0.88918 0.95402 1.21102 1.01024 0.94399 0.98172 1.20687 1.02766 0.95714 0.99837 1.21018 0.97543 0.99122 0.94309 1.21680 1.01890 0.91564 1.01227 1.17902 0.92390 0.89732 0.87735 1.44016 1.27696 1.27950 1.32415 1.17022 0.78759 0.85798 0.83163 1.90599 1.48380 1.34968 1.71253 1.20026 1.08582 1.17443 1.11102 0.91260 1.25748 0.95078 0.94570 0.98009 1.69997 1.08903 1.24108 1.34547 0.86367 0.78281 0.80693 0.81121 1.19065 1.20384 1.19065 0.91580 0.92895 0.92283 0.94481 0.92705 0.92470 0.91541 0.95776 0.91091 0.91491 0.87621 0.87514 0.86897 0.82864 0.76781 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.07 37.16 0.34 -1.91 16 2 C 0.09 1.21 2.45 -67.71 -0.17 1.05 16 3 C -0.15 -1.69 8.84 37.16 0.33 -1.36 16 4 N -0.49 -7.72 3.96 -171.12 -0.68 -8.40 16 5 C 0.03 0.34 9.01 60.06 0.54 0.88 16 6 C 0.02 0.28 3.34 -83.52 -0.28 0.00 16 7 C -0.13 -2.08 8.57 -39.41 -0.34 -2.42 16 8 C -0.17 -2.78 10.04 -39.52 -0.40 -3.18 16 9 C -0.10 -1.85 10.04 -39.56 -0.40 -2.25 16 10 C -0.14 -3.14 8.71 -39.39 -0.34 -3.48 16 11 C 0.23 4.86 6.45 -83.53 -0.54 4.32 16 12 N -0.68 -15.79 5.24 -12.29 -0.06 -15.86 16 13 C 0.54 15.09 7.37 -14.93 -0.11 14.98 16 14 O -0.57 -17.53 12.03 5.11 0.06 -17.47 16 15 C -0.54 -14.68 9.31 -37.54 -0.35 -15.03 16 16 H 0.07 1.74 7.85 -52.48 -0.41 1.33 16 17 C 0.09 2.39 5.50 -17.35 -0.10 2.29 16 18 N -0.75 -21.51 11.73 55.56 0.65 -20.86 16 19 Si 0.91 19.44 29.56 -169.99 -5.02 14.42 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.06 1.08 7.22 -51.93 -0.37 0.71 16 26 H 0.04 0.51 7.14 -51.93 -0.37 0.14 16 27 H 0.05 0.56 6.26 -51.93 -0.33 0.23 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.02 0.29 7.33 -51.93 -0.38 -0.09 16 31 H 0.07 0.79 6.01 -51.93 -0.31 0.47 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.11 1.52 7.02 -52.49 -0.37 1.15 16 34 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 36 H 0.15 3.89 5.78 -52.48 -0.30 3.59 16 37 H 0.40 8.45 8.24 -40.82 -0.34 8.11 16 38 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 LS Contribution 310.49 15.07 4.68 4.68 Total: -1.00 -30.96 310.49 -7.46 -38.41 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -5.28 Total: 11.19 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -1.81 Total: -6.11 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -0.09 Total: -45.12 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: 0.06 Total: -17.47 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.96 -7.46 -38.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408523708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.612 kcal (2) G-P(sol) polarization free energy of solvation -30.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds