Wall clock time and date at job start Mon Mar 30 2020 19:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37092 * 120.00122 * 2 1 4 4 H 1.07996 * 120.00153 * 204.39507 * 3 2 1 5 5 C 1.38955 * 120.00096 * 24.38866 * 3 2 1 6 6 N 1.31416 * 119.99650 * 12.65233 * 5 3 2 7 7 Si 1.86797 * 120.00314 * 192.64424 * 5 3 2 8 8 H 1.48501 * 109.46893 * 89.99933 * 7 5 3 9 9 H 1.48502 * 109.47183 * 210.00428 * 7 5 3 10 10 H 1.48502 * 109.46944 * 330.00608 * 7 5 3 11 11 C 1.34781 * 120.00044 * 179.97438 * 2 1 3 12 12 O 1.21289 * 120.00196 * 180.02562 * 11 2 1 13 13 C 1.50702 * 119.99557 * 0.02562 * 11 2 1 14 14 N 1.46903 * 109.46749 * 179.97438 * 13 11 2 15 15 C 1.46910 * 110.99801 * 66.04729 * 14 13 11 16 16 C 1.46894 * 111.00270 * 190.00086 * 14 13 11 17 17 C 1.50699 * 109.47594 * 170.00197 * 16 14 13 18 18 C 1.38232 * 119.99919 * 269.72961 * 17 16 14 19 19 C 1.38244 * 119.99978 * 179.76351 * 18 17 16 20 20 C 1.38231 * 119.99487 * 0.50442 * 19 18 17 21 21 C 1.38242 * 120.00351 * 359.74881 * 20 19 18 22 22 C 1.38227 * 119.99848 * 359.97438 * 21 20 19 23 23 H 1.09007 * 109.47161 * 265.86562 * 1 2 3 24 24 H 1.09000 * 109.47538 * 25.86854 * 1 2 3 25 25 H 1.09005 * 109.47556 * 145.86946 * 1 2 3 26 26 H 0.96997 * 120.00039 * 180.02562 * 6 5 3 27 27 H 1.08994 * 109.47116 * 60.00411 * 13 11 2 28 28 H 1.08992 * 109.47644 * 299.99699 * 13 11 2 29 29 H 1.08997 * 109.47010 * 183.95482 * 15 14 13 30 30 H 1.09001 * 109.46986 * 63.95505 * 15 14 13 31 31 H 1.09001 * 109.46911 * 303.95139 * 15 14 13 32 32 H 1.09008 * 109.47135 * 290.00566 * 16 14 13 33 33 H 1.08998 * 109.47284 * 49.99712 * 16 14 13 34 34 H 1.07997 * 120.00442 * 359.97438 * 18 17 16 35 35 H 1.07992 * 120.00010 * 180.22766 * 19 18 17 36 36 H 1.08000 * 119.99879 * 179.72175 * 20 19 18 37 37 H 1.08005 * 119.99772 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.99986 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1872 0.0000 4 1 3.1581 1.2290 -0.3863 5 6 1.5487 2.3370 0.4969 6 7 0.4345 2.2491 1.1882 7 14 2.3236 4.0073 0.1825 8 1 1.7868 4.5719 -1.0817 9 1 2.0033 4.9213 1.3083 10 1 3.7967 3.8565 0.0710 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0010 13 6 1.3853 -2.4723 0.0005 14 7 2.3399 -3.5889 0.0005 15 6 3.1052 -3.6272 1.2539 16 6 1.6555 -4.8666 -0.2376 17 6 2.6782 -5.9478 -0.4749 18 6 3.1168 -6.2146 -1.7584 19 6 4.0586 -7.2030 -1.9755 20 6 4.5538 -7.9316 -0.9103 21 6 4.1113 -7.6684 0.3726 22 6 3.1739 -6.6762 0.5903 23 1 -0.3634 -0.0741 1.0250 24 1 -0.3634 0.9247 -0.4484 25 1 -0.3634 -0.8507 -0.5766 26 1 0.0142 3.0517 1.5348 27 1 0.7590 -2.5302 -0.8897 28 1 0.7583 -2.5299 0.8902 29 1 3.8523 -4.4190 1.1994 30 1 2.4292 -3.8221 2.0865 31 1 3.6019 -2.6689 1.4058 32 1 1.0511 -5.1229 0.6326 33 1 1.0121 -4.7767 -1.1129 34 1 2.7264 -5.6485 -2.5911 35 1 4.4040 -7.4089 -2.9778 36 1 5.2863 -8.7069 -1.0804 37 1 4.4980 -8.2380 1.2048 38 1 2.8278 -6.4708 1.5926 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337542607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:04:25 Heat of formation + Delta-G solvation = 12.295171 kcal Electronic energy + Delta-G solvation = -19373.428718 eV Core-core repulsion = 16409.599816 eV Total energy + Delta-G solvation = -2963.828902 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.47837 -38.51590 -36.29362 -34.47247 -31.73635 -31.41939 -30.87953 -27.82995 -26.84133 -26.04167 -24.27142 -22.61649 -22.36457 -20.69465 -18.75577 -16.88847 -16.70455 -16.12208 -15.48508 -15.29334 -14.91637 -14.69724 -14.36445 -13.85622 -13.69998 -13.39455 -13.31853 -12.61714 -12.48245 -12.14519 -11.98195 -11.62542 -11.43833 -11.25147 -11.19020 -10.97285 -10.89115 -10.84842 -10.74180 -10.31919 -10.20284 -8.97052 -8.86785 -8.74425 -8.38132 -7.77947 -7.60033 -6.28427 -3.84409 1.37109 1.44706 3.19112 3.27387 3.33191 3.73010 3.95698 4.14435 4.41906 4.83168 4.88125 5.01878 5.05426 5.13214 5.15100 5.36391 5.52573 5.59254 5.66328 5.73987 5.79826 5.95327 6.02187 6.03945 6.04274 6.10750 6.36866 6.47633 6.52604 6.64639 6.69670 6.85924 7.03093 7.20415 7.33320 7.45000 7.60679 8.21000 8.55307 9.25174 9.47478 10.06084 10.76739 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.044691 B = 0.003854 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.369864 B = 7263.823956 C = 7417.792837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.451 5.451 3 C -0.303 4.303 4 H 0.097 0.903 5 C 0.029 3.971 6 N -0.885 5.885 7 Si 0.925 3.075 8 H -0.278 1.278 9 H -0.285 1.285 10 H -0.269 1.269 11 C 0.453 3.547 12 O -0.570 6.570 13 C 0.046 3.954 14 N -0.515 5.515 15 C 0.021 3.979 16 C 0.090 3.910 17 C -0.068 4.068 18 C -0.097 4.097 19 C -0.123 4.123 20 C -0.126 4.126 21 C -0.124 4.124 22 C -0.113 4.113 23 H 0.050 0.950 24 H 0.074 0.926 25 H 0.023 0.977 26 H 0.266 0.734 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.013 0.987 31 H 0.095 0.905 32 H 0.039 0.961 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.294 -16.229 -2.381 16.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.172 5.172 3 C -0.431 4.431 4 H 0.115 0.885 5 C -0.174 4.174 6 N -0.525 5.525 7 Si 0.752 3.248 8 H -0.204 1.204 9 H -0.210 1.210 10 H -0.194 1.194 11 C 0.240 3.760 12 O -0.453 6.453 13 C -0.085 4.085 14 N -0.238 5.238 15 C -0.127 4.127 16 C -0.038 4.038 17 C -0.069 4.069 18 C -0.116 4.116 19 C -0.141 4.141 20 C -0.144 4.144 21 C -0.142 4.142 22 C -0.132 4.132 23 H 0.068 0.932 24 H 0.093 0.907 25 H 0.042 0.958 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.031 0.969 31 H 0.113 0.887 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.489 -15.976 -2.665 16.204 hybrid contribution -0.494 0.773 0.656 1.128 sum -0.006 -15.202 -2.010 15.335 Atomic orbital electron populations 1.21453 0.81461 0.99815 1.00384 1.43565 1.05327 1.04701 1.63596 1.19642 1.00584 0.84149 1.38735 0.88485 1.25331 0.96702 1.00069 0.95257 1.69994 1.19369 1.29483 1.33662 0.85936 0.79677 0.81387 0.77769 1.20427 1.21031 1.19375 1.19896 0.88197 0.84403 0.83515 1.90484 1.13749 1.86672 1.54383 1.21941 0.93933 0.91231 1.01352 1.61622 1.25131 1.00659 1.36412 1.22585 0.97439 1.04718 0.87954 1.21110 0.93523 0.88213 1.00937 1.19771 0.97874 0.95825 0.93386 1.21053 0.96947 0.96889 0.96710 1.21132 0.97551 0.96513 0.98905 1.21099 1.00236 1.00083 0.92999 1.21078 0.97923 0.98251 0.96961 1.21073 0.97553 0.96014 0.98513 0.93194 0.90718 0.95822 0.92366 0.89552 0.93297 0.91895 0.96880 0.88689 0.94279 0.90100 0.85932 0.86264 0.86471 0.86369 0.86406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.52 8.44 59.84 0.51 3.02 16 2 N -0.45 -11.69 3.01 -122.19 -0.37 -12.06 16 3 C -0.30 -8.56 9.24 -14.93 -0.14 -8.70 16 4 H 0.10 2.88 7.45 -52.49 -0.39 2.49 16 5 C 0.03 0.78 5.04 -17.46 -0.09 0.69 16 6 N -0.89 -23.82 10.83 55.50 0.60 -23.22 16 7 Si 0.93 21.00 29.57 -169.99 -5.03 15.97 16 8 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 C 0.45 11.17 7.32 -10.98 -0.08 11.09 16 12 O -0.57 -15.95 14.04 5.55 0.08 -15.87 16 13 C 0.05 0.88 4.05 -4.97 -0.02 0.86 16 14 N -0.51 -9.18 4.49 -245.82 -1.10 -10.29 16 15 C 0.02 0.37 8.78 60.07 0.53 0.90 16 16 C 0.09 1.25 5.12 -4.98 -0.03 1.22 16 17 C -0.07 -0.91 4.88 -104.62 -0.51 -1.42 16 18 C -0.10 -1.25 9.70 -39.58 -0.38 -1.63 16 19 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 20 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 21 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 22 C -0.11 -1.39 7.97 -39.59 -0.32 -1.70 16 23 H 0.05 1.14 7.83 -51.93 -0.41 0.73 16 24 H 0.07 1.76 6.80 -51.93 -0.35 1.41 16 25 H 0.02 0.43 6.61 -51.93 -0.34 0.09 16 26 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 27 H 0.09 1.46 7.20 -51.93 -0.37 1.08 16 28 H 0.05 0.88 8.09 -51.93 -0.42 0.46 16 29 H 0.06 1.03 6.16 -51.93 -0.32 0.71 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 2.05 5.82 -51.93 -0.30 1.74 16 32 H 0.04 0.50 8.07 -51.92 -0.42 0.08 16 33 H 0.08 1.02 7.87 -51.93 -0.41 0.61 16 34 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 38 H 0.12 1.32 8.03 -52.49 -0.42 0.90 16 LS Contribution 312.57 15.07 4.71 4.71 Total: -1.00 -31.57 312.57 -8.24 -39.81 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.41 Total: 1.93 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.72 Total: -0.99 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -0.87 Total: -45.57 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.08 Total: -15.87 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.57 -8.24 -39.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337542607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.107 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds