Wall clock time and date at job start Mon Mar 30 2020 19:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37092 * 120.00122 * 2 1 4 4 H 1.07996 * 120.00153 * 204.39507 * 3 2 1 5 5 C 1.38955 * 120.00096 * 24.38866 * 3 2 1 6 6 N 1.31416 * 119.99650 * 12.65233 * 5 3 2 7 7 Si 1.86797 * 120.00314 * 192.64424 * 5 3 2 8 8 H 1.48501 * 109.46893 * 89.99933 * 7 5 3 9 9 H 1.48502 * 109.47183 * 210.00428 * 7 5 3 10 10 H 1.48502 * 109.46944 * 330.00608 * 7 5 3 11 11 C 1.34781 * 120.00044 * 179.97438 * 2 1 3 12 12 O 1.21289 * 120.00196 * 180.02562 * 11 2 1 13 13 C 1.50702 * 119.99557 * 0.02562 * 11 2 1 14 14 N 1.46903 * 109.46749 * 179.97438 * 13 11 2 15 15 C 1.46910 * 110.99801 * 66.04729 * 14 13 11 16 16 C 1.46894 * 111.00270 * 190.00086 * 14 13 11 17 17 C 1.50699 * 109.47594 * 170.00197 * 16 14 13 18 18 C 1.38232 * 119.99919 * 269.72961 * 17 16 14 19 19 C 1.38244 * 119.99978 * 179.76351 * 18 17 16 20 20 C 1.38231 * 119.99487 * 0.50442 * 19 18 17 21 21 C 1.38242 * 120.00351 * 359.74881 * 20 19 18 22 22 C 1.38227 * 119.99848 * 359.97438 * 21 20 19 23 23 H 1.09007 * 109.47161 * 265.86562 * 1 2 3 24 24 H 1.09000 * 109.47538 * 25.86854 * 1 2 3 25 25 H 1.09005 * 109.47556 * 145.86946 * 1 2 3 26 26 H 0.96997 * 120.00039 * 180.02562 * 6 5 3 27 27 H 1.08994 * 109.47116 * 60.00411 * 13 11 2 28 28 H 1.08992 * 109.47644 * 299.99699 * 13 11 2 29 29 H 1.08997 * 109.47010 * 183.95482 * 15 14 13 30 30 H 1.09001 * 109.46986 * 63.95505 * 15 14 13 31 31 H 1.09001 * 109.46911 * 303.95139 * 15 14 13 32 32 H 1.09008 * 109.47135 * 290.00566 * 16 14 13 33 33 H 1.08998 * 109.47284 * 49.99712 * 16 14 13 34 34 H 1.07997 * 120.00442 * 359.97438 * 18 17 16 35 35 H 1.07992 * 120.00010 * 180.22766 * 19 18 17 36 36 H 1.08000 * 119.99879 * 179.72175 * 20 19 18 37 37 H 1.08005 * 119.99772 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.99986 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1872 0.0000 4 1 3.1581 1.2290 -0.3863 5 6 1.5487 2.3370 0.4969 6 7 0.4345 2.2491 1.1882 7 14 2.3236 4.0073 0.1825 8 1 1.7868 4.5719 -1.0817 9 1 2.0033 4.9213 1.3083 10 1 3.7967 3.8565 0.0710 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0010 13 6 1.3853 -2.4723 0.0005 14 7 2.3399 -3.5889 0.0005 15 6 3.1052 -3.6272 1.2539 16 6 1.6555 -4.8666 -0.2376 17 6 2.6782 -5.9478 -0.4749 18 6 3.1168 -6.2146 -1.7584 19 6 4.0586 -7.2030 -1.9755 20 6 4.5538 -7.9316 -0.9103 21 6 4.1113 -7.6684 0.3726 22 6 3.1739 -6.6762 0.5903 23 1 -0.3634 -0.0741 1.0250 24 1 -0.3634 0.9247 -0.4484 25 1 -0.3634 -0.8507 -0.5766 26 1 0.0142 3.0517 1.5348 27 1 0.7590 -2.5302 -0.8897 28 1 0.7583 -2.5299 0.8902 29 1 3.8523 -4.4190 1.1994 30 1 2.4292 -3.8221 2.0865 31 1 3.6019 -2.6689 1.4058 32 1 1.0511 -5.1229 0.6326 33 1 1.0121 -4.7767 -1.1129 34 1 2.7264 -5.6485 -2.5911 35 1 4.4040 -7.4089 -2.9778 36 1 5.2863 -8.7069 -1.0804 37 1 4.4980 -8.2380 1.2048 38 1 2.8278 -6.4708 1.5926 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337542607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:04:25 Heat of formation + Delta-G solvation = -7.573391 kcal Electronic energy + Delta-G solvation = -19374.290283 eV Core-core repulsion = 16409.599816 eV Total energy + Delta-G solvation = -2964.690467 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.72346 -40.02467 -37.70944 -36.41949 -33.66362 -32.57615 -31.74739 -29.45181 -28.14763 -27.73664 -26.11226 -23.87352 -23.32680 -21.72729 -20.57123 -18.85600 -18.02864 -17.50210 -16.82275 -16.60398 -16.43588 -16.09820 -15.79067 -15.53914 -15.16238 -14.82213 -14.22042 -13.95397 -13.76501 -13.62087 -13.36010 -13.25528 -13.12800 -12.82915 -12.69105 -12.58480 -12.46868 -12.22374 -12.12634 -11.83962 -11.77569 -10.97828 -10.25645 -9.74390 -9.67404 -9.62249 -9.16541 -8.32183 -5.96969 0.47102 0.56996 1.38028 1.41043 1.53238 2.07360 2.27614 2.68918 3.08694 3.10032 3.39840 3.86827 3.99286 4.06522 4.21982 4.28949 4.33717 4.38484 4.40011 4.50708 4.61887 4.68449 4.70281 4.77503 4.84189 5.03769 5.14937 5.17336 5.22333 5.37548 5.46143 5.60825 5.67197 5.76157 5.91907 6.13323 6.17048 6.22715 6.54552 7.21481 7.50804 8.09877 8.70784 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.044691 B = 0.003854 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.369864 B = 7263.823956 C = 7417.792837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.468 5.468 3 C -0.342 4.342 4 H 0.068 0.932 5 C -0.002 4.002 6 N -0.898 5.898 7 Si 0.988 3.012 8 H -0.265 1.265 9 H -0.274 1.274 10 H -0.278 1.278 11 C 0.441 3.559 12 O -0.613 6.613 13 C 0.060 3.940 14 N -0.534 5.534 15 C 0.031 3.969 16 C 0.094 3.906 17 C -0.088 4.088 18 C -0.115 4.115 19 C -0.131 4.131 20 C -0.128 4.128 21 C -0.129 4.129 22 C -0.124 4.124 23 H 0.041 0.959 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.273 0.727 27 H 0.113 0.887 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.029 0.971 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.980 -17.493 -2.600 17.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.189 5.189 3 C -0.470 4.470 4 H 0.086 0.914 5 C -0.204 4.204 6 N -0.537 5.537 7 Si 0.812 3.188 8 H -0.190 1.190 9 H -0.199 1.199 10 H -0.203 1.203 11 C 0.231 3.769 12 O -0.499 6.499 13 C -0.070 4.070 14 N -0.258 5.258 15 C -0.117 4.117 16 C -0.033 4.033 17 C -0.089 4.089 18 C -0.134 4.134 19 C -0.149 4.149 20 C -0.146 4.146 21 C -0.147 4.147 22 C -0.143 4.143 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.131 0.869 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.141 0.859 35 H 0.157 0.843 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.239 -17.258 -2.883 17.499 hybrid contribution -0.239 1.082 0.730 1.327 sum -0.478 -16.176 -2.153 16.325 Atomic orbital electron populations 1.21418 0.79459 1.00817 1.00424 1.43845 1.06690 1.04573 1.63777 1.19570 1.00326 0.86244 1.40857 0.91422 1.26053 0.97102 1.02828 0.94407 1.70060 1.19790 1.30636 1.33237 0.85017 0.78235 0.77202 0.78385 1.18973 1.19866 1.20275 1.20938 0.88134 0.86002 0.81872 1.90454 1.15959 1.87628 1.55882 1.21792 0.93523 0.88491 1.03222 1.61551 1.25768 1.02106 1.36381 1.22384 0.97924 1.02522 0.88900 1.21153 0.93778 0.86272 1.02070 1.19833 0.98660 0.96338 0.94045 1.21235 0.97738 0.97690 0.96714 1.21436 0.97084 0.96074 1.00260 1.21473 1.00211 1.00236 0.92683 1.21414 0.97356 0.97949 0.98006 1.21259 0.97979 0.96407 0.98630 0.94047 0.92473 0.91417 0.91785 0.86887 0.91760 0.90857 0.95242 0.93054 0.92848 0.88750 0.85850 0.84350 0.83929 0.84141 0.85705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.35 8.44 127.77 1.08 6.43 16 2 N -0.47 -24.61 3.01 -658.89 -1.98 -26.59 16 3 C -0.34 -19.88 9.24 84.04 0.78 -19.10 16 4 H 0.07 4.23 7.45 -2.91 -0.02 4.21 16 5 C 0.00 -0.13 5.04 84.93 0.43 0.30 16 6 N -0.90 -48.19 10.83 21.67 0.23 -47.95 16 7 Si 0.99 43.24 29.57 68.60 2.03 45.27 16 8 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 9 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 C 0.44 22.10 7.32 87.66 0.64 22.74 16 12 O -0.61 -35.70 14.04 -3.06 -0.04 -35.75 16 13 C 0.06 2.21 4.05 85.56 0.35 2.55 16 14 N -0.53 -18.52 4.49 -931.64 -4.18 -22.70 16 15 C 0.03 1.09 8.78 127.69 1.12 2.21 16 16 C 0.09 2.43 5.12 85.56 0.44 2.86 16 17 C -0.09 -2.24 4.88 -19.87 -0.10 -2.33 16 18 C -0.12 -2.80 9.70 22.27 0.22 -2.58 16 19 C -0.13 -2.72 10.05 22.27 0.22 -2.49 16 20 C -0.13 -2.43 10.05 22.27 0.22 -2.20 16 21 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 22 C -0.12 -2.84 7.97 22.27 0.18 -2.66 16 23 H 0.04 1.86 7.83 -2.38 -0.02 1.84 16 24 H 0.06 2.68 6.80 -2.39 -0.02 2.66 16 25 H 0.07 2.32 6.61 -2.38 -0.02 2.31 16 26 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 27 H 0.11 3.50 7.20 -2.39 -0.02 3.48 16 28 H 0.06 2.16 8.09 -2.39 -0.02 2.14 16 29 H 0.07 2.39 6.16 -2.39 -0.01 2.37 16 30 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 2.28 5.82 -2.39 -0.01 2.27 16 32 H 0.05 1.23 8.07 -2.38 -0.02 1.21 16 33 H 0.09 2.15 7.87 -2.39 -0.02 2.13 16 34 H 0.12 2.85 8.06 -2.91 -0.02 2.82 16 35 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 36 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 37 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 38 H 0.12 2.57 8.03 -2.91 -0.02 2.55 16 Total: -1.00 -70.02 312.57 2.89 -67.13 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 1.04 Total: 17.21 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 5.80 Total: 3.38 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -5.93 Total: -97.24 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -0.04 Total: -35.75 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -70.02 2.89 -67.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337542607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.560 kcal (2) G-P(sol) polarization free energy of solvation -70.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds