Wall clock time and date at job start Mon Mar 30 2020 19:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38190 * 120.35774 * 2 1 4 4 C 1.39679 * 118.49280 * 179.97438 * 3 2 1 5 5 N 1.38535 * 120.48976 * 179.97438 * 4 3 2 6 6 C 1.48532 * 110.99873 * 62.60765 * 5 4 3 7 7 C 1.54943 * 103.22961 * 159.72167 * 6 5 4 8 8 C 1.54594 * 102.91908 * 322.58038 * 7 6 5 9 9 C 1.47901 * 110.99955 * 179.97438 * 5 4 3 10 10 N 1.32896 * 119.02422 * 359.75062 * 4 3 2 11 11 C 1.32490 * 120.61584 * 0.50690 * 10 4 3 12 12 N 1.38428 * 119.17899 * 179.75992 * 11 10 4 13 13 C 1.46494 * 119.99912 * 359.72628 * 12 11 10 14 14 C 1.36993 * 119.99870 * 179.72607 * 12 11 10 15 15 H 1.07994 * 119.99967 * 339.00775 * 14 12 11 16 16 C 1.38833 * 119.99798 * 158.72830 * 14 12 11 17 17 N 1.31543 * 119.99916 * 346.71872 * 16 14 12 18 18 Si 1.86799 * 119.99836 * 166.71760 * 16 14 12 19 19 H 1.48498 * 109.47188 * 94.23282 * 18 16 14 20 20 H 1.48504 * 109.46982 * 214.23240 * 18 16 14 21 21 H 1.48501 * 109.46941 * 334.22943 * 18 16 14 22 22 N 1.32443 * 120.35507 * 179.97438 * 2 1 3 23 23 H 1.09007 * 109.47178 * 270.02115 * 1 2 3 24 24 H 1.09002 * 109.47669 * 30.01661 * 1 2 3 25 25 H 1.08994 * 109.47607 * 150.02245 * 1 2 3 26 26 H 1.08005 * 120.75079 * 0.02562 * 3 2 1 27 27 H 1.09009 * 110.66682 * 278.15457 * 6 5 4 28 28 H 1.09002 * 110.66941 * 41.28467 * 6 5 4 29 29 H 1.08997 * 110.71935 * 204.22592 * 7 6 5 30 30 H 1.08998 * 110.72138 * 80.94118 * 7 6 5 31 31 H 1.08995 * 110.31505 * 263.04413 * 8 7 6 32 32 H 1.09002 * 110.30891 * 140.86679 * 8 7 6 33 33 H 1.09001 * 109.92174 * 333.51377 * 9 5 4 34 34 H 1.09009 * 109.91433 * 94.80923 * 9 5 4 35 35 H 1.08998 * 109.47229 * 265.76123 * 13 12 11 36 36 H 1.09002 * 109.47407 * 25.76474 * 13 12 11 37 37 H 1.09000 * 109.47311 * 145.76583 * 13 12 11 38 38 H 0.96998 * 119.99883 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2053 1.1924 0.0000 4 6 3.6014 1.1470 0.0005 5 7 4.3428 2.3172 0.0000 6 6 4.0882 3.1091 1.2306 7 6 5.3235 4.0406 1.3147 8 6 6.4753 3.1321 0.8270 9 6 5.7928 2.0260 0.0014 10 7 4.2080 -0.0354 0.0061 11 6 3.5016 -1.1563 0.0010 12 7 4.1641 -2.3717 0.0019 13 6 5.6287 -2.4075 0.0025 14 6 3.4503 -3.5409 0.0024 15 1 2.4236 -3.5466 0.3370 16 6 4.0451 -4.7175 -0.4329 17 7 5.1872 -4.6752 -1.0841 18 14 3.2235 -6.3604 -0.0937 19 1 2.3905 -6.7475 -1.2605 20 1 4.2631 -7.3954 0.1374 21 1 2.3638 -6.2444 1.1116 22 7 2.1762 -1.1429 0.0005 23 1 -0.3634 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3634 -0.8901 -0.5134 26 1 1.6835 2.1380 0.0004 27 1 3.1728 3.6923 1.1303 28 1 4.0372 2.4581 2.1034 29 1 5.4946 4.3624 2.3420 30 1 5.2042 4.9000 0.6550 31 1 7.0016 2.6988 1.6774 32 1 7.1659 3.6990 0.2025 33 1 5.9760 1.0541 0.4594 34 1 6.1745 2.0362 -1.0196 35 1 5.9904 -2.4929 -1.0221 36 1 6.0144 -1.4909 0.4488 37 1 5.9709 -3.2654 0.5813 38 1 5.6026 -5.4972 -1.3886 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166800981.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:05:59 Heat of formation + Delta-G solvation = 64.515379 kcal Electronic energy + Delta-G solvation = -19998.517728 eV Core-core repulsion = 17069.246016 eV Total energy + Delta-G solvation = -2929.271713 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.149 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.82333 -39.73756 -37.87563 -35.01628 -34.22231 -32.48889 -30.93045 -30.04581 -28.66305 -28.21347 -26.31072 -24.10040 -22.71410 -21.87768 -21.41555 -19.54742 -18.27973 -17.92117 -17.12222 -16.69526 -16.18603 -16.02438 -15.85311 -15.23645 -14.96695 -14.64093 -14.27570 -14.10613 -13.57810 -13.47159 -13.28472 -13.13940 -13.03831 -12.80881 -12.68630 -12.43585 -12.23403 -12.11757 -12.07899 -11.57267 -11.45152 -11.30413 -11.09522 -10.64016 -9.72867 -9.64423 -8.88278 -8.34235 -5.85198 0.56854 0.62482 1.40070 1.44683 1.54810 2.16043 2.58264 2.77252 2.91598 3.34716 3.54820 3.69848 3.89309 4.09349 4.18632 4.34738 4.35303 4.55000 4.61858 4.70047 4.76412 4.82311 4.85476 4.90144 4.92650 4.96884 5.02874 5.09307 5.14976 5.19574 5.22294 5.30094 5.43167 5.58808 5.71382 5.86006 6.30132 6.55302 6.65120 7.19939 7.43363 8.00949 8.66261 Molecular weight = 262.15amu Principal moments of inertia in cm(-1) A = 0.024162 B = 0.005967 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.556313 B = 4691.172262 C = 5677.776647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.207 3.793 3 C -0.346 4.346 4 C 0.370 3.630 5 N -0.463 5.463 6 C 0.045 3.955 7 C -0.111 4.111 8 C -0.125 4.125 9 C 0.031 3.969 10 N -0.641 5.641 11 C 0.512 3.488 12 N -0.427 5.427 13 C 0.158 3.842 14 C -0.313 4.313 15 H 0.094 0.906 16 C -0.017 4.017 17 N -0.905 5.905 18 Si 1.003 2.997 19 H -0.274 1.274 20 H -0.272 1.272 21 H -0.264 1.264 22 N -0.617 5.617 23 H 0.093 0.907 24 H 0.103 0.897 25 H 0.066 0.934 26 H 0.156 0.844 27 H 0.107 0.893 28 H 0.037 0.963 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.036 0.964 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.955 14.391 5.105 15.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.058 3.942 3 C -0.377 4.377 4 C 0.127 3.873 5 N -0.182 5.182 6 C -0.080 4.080 7 C -0.149 4.149 8 C -0.163 4.163 9 C -0.096 4.096 10 N -0.374 5.374 11 C 0.157 3.843 12 N -0.123 5.123 13 C 0.014 3.986 14 C -0.442 4.442 15 H 0.112 0.888 16 C -0.218 4.218 17 N -0.542 5.542 18 Si 0.825 3.175 19 H -0.200 1.200 20 H -0.197 1.197 21 H -0.188 1.188 22 N -0.346 5.346 23 H 0.111 0.889 24 H 0.121 0.879 25 H 0.085 0.915 26 H 0.173 0.827 27 H 0.125 0.875 28 H 0.056 0.944 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.255 13.370 4.564 14.183 hybrid contribution -0.142 -0.890 0.206 0.925 sum -1.397 12.480 4.770 13.433 Atomic orbital electron populations 1.20725 0.85931 1.04022 1.04019 1.21886 0.98401 0.87149 0.86749 1.21574 0.92830 1.00195 1.23092 1.20149 0.91457 0.87986 0.87730 1.61926 1.06671 1.12838 1.36726 1.23402 1.01838 0.95072 0.87708 1.22533 0.91694 0.97427 1.03249 1.22431 0.98416 0.95866 0.99611 1.22845 0.85830 0.99659 1.01290 1.67602 1.40908 0.97929 1.30963 1.19346 0.85695 0.86013 0.93225 1.42415 1.05436 1.00959 1.63480 1.21068 0.78551 0.98678 1.00313 1.19902 0.98583 0.84069 1.41655 0.88779 1.26311 0.97393 1.03217 0.94844 1.70217 1.19099 1.29684 1.35246 0.84777 0.77794 0.76044 0.78844 1.19953 1.19706 1.18830 1.67794 1.07756 1.31405 1.27603 0.88860 0.87871 0.91484 0.82675 0.87458 0.94427 0.88356 0.89025 0.90955 0.89130 0.92923 0.91413 0.94557 0.93116 0.92937 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.54 10.21 71.23 0.73 -1.81 16 2 C 0.21 8.35 6.81 42.45 0.29 8.64 16 3 C -0.35 -12.80 9.25 22.61 0.21 -12.59 16 4 C 0.37 15.10 6.21 133.21 0.83 15.93 16 5 N -0.46 -15.14 5.30 -688.84 -3.65 -18.79 16 6 C 0.05 1.09 6.08 86.65 0.53 1.62 16 7 C -0.11 -1.95 7.06 31.80 0.22 -1.72 16 8 C -0.13 -2.65 6.93 31.47 0.22 -2.43 16 9 C 0.03 0.98 6.36 86.44 0.55 1.53 16 10 N -0.64 -31.00 6.90 -195.47 -1.35 -32.35 16 11 C 0.51 27.51 8.13 261.46 2.13 29.63 16 12 N -0.43 -24.18 3.11 -547.69 -1.70 -25.89 16 13 C 0.16 8.27 8.74 127.77 1.12 9.38 16 14 C -0.31 -18.03 9.31 84.03 0.78 -17.25 16 15 H 0.09 5.51 7.30 -2.91 -0.02 5.49 16 16 C -0.02 -0.90 5.09 84.88 0.43 -0.46 16 17 N -0.90 -50.58 10.63 21.65 0.23 -50.35 16 18 Si 1.00 42.95 29.57 68.60 2.03 44.98 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 20 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 21 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 22 N -0.62 -31.29 9.14 -186.21 -1.70 -32.99 16 23 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 24 H 0.10 2.21 8.09 -2.39 -0.02 2.19 16 25 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.16 4.52 8.06 -2.91 -0.02 4.50 16 27 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 28 H 0.04 1.02 7.99 -2.39 -0.02 1.00 16 29 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.05 2.00 6.52 -2.39 -0.02 1.99 16 34 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 35 H 0.04 2.01 7.44 -2.39 -0.02 1.99 16 36 H 0.05 2.46 7.19 -2.39 -0.02 2.44 16 37 H 0.05 2.77 7.17 -2.39 -0.02 2.75 16 38 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -69.38 309.38 2.93 -66.45 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 1.04 Total: 18.48 kcal Atomic # 6 Polarization: 22.43 SS G_CDS: 8.03 Total: 30.46 kcal Atomic # 7 Polarization: -152.19 SS G_CDS: -8.18 Total: -160.37 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -69.38 2.93 -66.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800981.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.966 kcal (2) G-P(sol) polarization free energy of solvation -69.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds