Wall clock time and date at job start Mon Mar 30 2020 19:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38220 * 120.42267 * 2 1 4 4 N 1.31852 * 120.76642 * 180.26796 * 3 2 1 5 5 C 1.31883 * 121.72537 * 359.73484 * 4 3 2 6 6 C 1.38184 * 120.76576 * 0.02823 * 5 4 3 7 7 C 1.50697 * 120.42273 * 179.97438 * 6 5 4 8 8 H 1.08992 * 109.47625 * 160.02219 * 7 6 5 9 9 C 1.53002 * 109.47278 * 280.02694 * 7 6 5 10 10 N 1.46900 * 109.47017 * 40.02147 * 7 6 5 11 11 C 1.46898 * 111.00394 * 155.00122 * 10 7 6 12 12 C 1.52995 * 109.47476 * 180.02562 * 11 10 7 13 13 C 1.53005 * 109.47131 * 300.00167 * 12 11 10 14 14 C 1.52996 * 109.47020 * 59.99913 * 12 11 10 15 15 C 1.50700 * 109.47043 * 180.02562 * 12 11 10 16 16 H 1.07996 * 120.00431 * 359.97438 * 15 12 11 17 17 C 1.37887 * 119.99936 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99569 * 359.97438 * 17 15 12 19 19 Si 1.86796 * 120.00040 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.47178 * 89.99609 * 19 17 15 21 21 H 1.48503 * 109.47009 * 209.99827 * 19 17 15 22 22 H 1.48503 * 109.47085 * 329.99521 * 19 17 15 23 23 C 1.38631 * 120.41659 * 179.77165 * 2 1 3 24 24 H 1.09006 * 109.47020 * 270.23133 * 1 2 3 25 25 H 1.09002 * 109.47164 * 30.22401 * 1 2 3 26 26 H 1.08994 * 109.47216 * 150.23094 * 1 2 3 27 27 H 1.07999 * 119.61761 * 0.02562 * 3 2 1 28 28 H 1.08006 * 119.61986 * 180.02562 * 5 4 3 29 29 H 1.09007 * 109.46840 * 299.99270 * 9 7 6 30 30 H 1.08995 * 109.47640 * 59.99051 * 9 7 6 31 31 H 1.09001 * 109.47057 * 180.02562 * 9 7 6 32 32 H 1.00903 * 111.00038 * 278.95971 * 10 7 6 33 33 H 1.09002 * 109.46769 * 300.00659 * 11 10 7 34 34 H 1.09004 * 109.46815 * 59.99760 * 11 10 7 35 35 H 1.08992 * 109.46961 * 59.99843 * 13 12 11 36 36 H 1.09000 * 109.47181 * 180.02562 * 13 12 11 37 37 H 1.08996 * 109.46747 * 299.99819 * 13 12 11 38 38 H 1.08996 * 109.47272 * 60.00404 * 14 12 11 39 39 H 1.09004 * 109.47543 * 180.02562 * 14 12 11 40 40 H 1.08998 * 109.47423 * 299.99889 * 14 12 11 41 41 H 0.97006 * 119.99586 * 180.02562 * 18 17 15 42 42 H 1.08002 * 120.79356 * 0.02604 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 -0.0053 5 6 4.2256 0.0822 -0.0056 6 6 3.5948 -1.1472 -0.0009 7 6 4.4025 -2.4194 -0.0018 8 1 3.7834 -3.2432 0.3532 9 6 4.8823 -2.7179 -1.4237 10 7 5.5639 -2.2626 0.8840 11 6 6.0265 -3.5652 1.3811 12 6 7.2339 -3.3615 2.2984 13 6 8.3609 -2.6849 1.5154 14 6 6.8325 -2.4776 3.4810 15 6 7.7088 -4.6979 2.8079 16 1 7.2002 -5.6021 2.5078 17 6 8.7923 -4.7662 3.6581 18 7 9.4114 -3.6651 4.0239 19 14 9.3814 -6.4228 4.2890 20 1 10.3943 -6.9764 3.3549 21 1 9.9884 -6.2529 5.6336 22 1 8.2297 -7.3559 4.3801 23 6 2.2089 -1.1955 0.0048 24 1 -0.3633 0.0041 1.0277 25 1 -0.3633 0.8880 -0.5173 26 1 -0.3633 -0.8920 -0.5102 27 1 1.6676 2.1276 0.0004 28 1 5.3047 0.1284 -0.0096 29 1 4.0205 -2.8343 -2.0809 30 1 5.5013 -1.8941 -1.7788 31 1 5.4661 -3.6383 -1.4244 32 1 6.3097 -1.7677 0.4182 33 1 5.2237 -4.0470 1.9392 34 1 6.3120 -4.1951 0.5385 35 1 8.0177 -1.7184 1.1466 36 1 9.2213 -2.5402 2.1689 37 1 8.6469 -3.3146 0.6730 38 1 6.0297 -2.9596 4.0388 39 1 7.6928 -2.3321 4.1344 40 1 6.4893 -1.5111 3.1122 41 1 10.1738 -3.7132 4.6217 42 1 1.6887 -2.1420 0.0081 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414165708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:06:36 Heat of formation + Delta-G solvation = 18.640890 kcal Electronic energy + Delta-G solvation = -19858.890136 eV Core-core repulsion = 17031.169499 eV Total energy + Delta-G solvation = -2827.720636 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 262.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.27535 -37.41097 -35.09168 -33.55496 -32.08379 -30.51023 -28.46891 -27.31248 -25.56468 -25.24674 -24.54958 -23.07672 -22.88592 -20.13517 -18.51891 -16.95246 -16.42315 -15.99021 -15.30037 -14.49365 -14.42034 -14.26105 -14.00266 -13.52262 -13.03355 -12.97378 -12.86066 -12.69379 -12.56758 -12.42392 -12.16008 -11.87441 -11.37237 -11.20761 -11.09152 -10.92603 -10.65633 -10.59084 -10.18809 -10.05560 -9.54598 -9.39521 -9.32977 -9.08833 -8.69060 -8.61283 -8.28937 -7.75186 -5.91066 -4.01603 1.21205 1.37108 3.31002 3.38323 3.40961 3.87401 4.40344 4.48104 4.64317 4.78360 4.90974 5.04589 5.12638 5.21464 5.25593 5.34417 5.39104 5.42031 5.61028 5.73768 5.76267 5.91679 5.98407 6.13747 6.23457 6.31728 6.39601 6.45969 6.71180 6.80893 6.89031 7.06904 7.16542 7.38624 7.46610 7.69168 7.76088 7.82737 7.91704 8.10531 8.21148 8.34655 8.55524 8.99756 9.63405 11.09371 Molecular weight = 262.17amu Principal moments of inertia in cm(-1) A = 0.035220 B = 0.004070 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.808933 B = 6878.583220 C = 6968.748180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.143 4.143 3 C 0.084 3.916 4 N -0.483 5.483 5 C 0.113 3.887 6 C -0.101 4.101 7 C 0.122 3.878 8 H 0.084 0.916 9 C -0.176 4.176 10 N -0.679 5.679 11 C 0.076 3.924 12 C 0.069 3.931 13 C -0.132 4.132 14 C -0.119 4.119 15 C -0.507 4.507 16 H 0.051 0.949 17 C 0.065 3.935 18 N -0.884 5.884 19 Si 0.888 3.112 20 H -0.283 1.283 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.078 4.078 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.149 0.851 28 H 0.154 0.846 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.339 0.661 33 H 0.056 0.944 34 H 0.016 0.984 35 H 0.010 0.990 36 H 0.083 0.917 37 H 0.019 0.981 38 H 0.017 0.983 39 H 0.074 0.926 40 H 0.020 0.980 41 H 0.258 0.742 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.821 5.562 -9.507 17.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.145 4.145 3 C -0.073 4.073 4 N -0.191 5.191 5 C -0.044 4.044 6 C -0.104 4.104 7 C 0.010 3.990 8 H 0.102 0.898 9 C -0.235 4.235 10 N -0.310 5.310 11 C -0.052 4.052 12 C 0.068 3.932 13 C -0.190 4.190 14 C -0.176 4.176 15 C -0.546 4.546 16 H 0.070 0.930 17 C -0.136 4.136 18 N -0.522 5.522 19 Si 0.716 3.284 20 H -0.209 1.209 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.105 4.105 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.166 0.834 28 H 0.171 0.829 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.159 0.841 33 H 0.074 0.926 34 H 0.034 0.966 35 H 0.029 0.971 36 H 0.102 0.898 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.092 0.908 40 H 0.039 0.961 41 H 0.068 0.932 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.582 6.552 -8.823 17.471 hybrid contribution 0.335 -2.188 -0.380 2.246 sum -13.248 4.364 -9.203 16.710 Atomic orbital electron populations 1.20685 0.90562 1.02733 1.02447 1.20843 0.97258 0.94239 1.02125 1.22564 0.90168 0.97157 0.97389 1.67683 1.08180 1.31500 1.11700 1.22530 1.00339 0.86929 0.94594 1.20916 0.93924 0.96893 0.98639 1.20395 0.93578 0.93337 0.91663 0.89822 1.22483 1.01504 1.02266 0.97232 1.60711 1.08921 1.22341 1.39060 1.22189 0.98837 0.87123 0.97007 1.18093 0.88960 0.94825 0.91297 1.21833 1.02496 0.95641 0.99007 1.21633 1.00110 0.96466 0.99435 1.21098 1.13480 0.92139 1.27869 0.93034 1.24886 0.96480 0.96086 0.96107 1.69838 1.21268 1.26192 1.34949 0.86664 0.78869 0.84630 0.78192 1.20882 1.21304 1.20089 1.21327 0.93477 0.98025 0.97650 0.91060 0.91431 0.91569 0.83410 0.82913 0.92573 0.92375 0.91787 0.84100 0.92555 0.96591 0.97076 0.89816 0.96213 0.96385 0.90768 0.96112 0.93187 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.04 36.01 0.36 -0.46 16 2 C -0.14 -1.59 5.90 -104.48 -0.62 -2.21 16 3 C 0.08 1.04 10.86 -17.55 -0.19 0.85 16 4 N -0.48 -7.17 10.36 -13.25 -0.14 -7.31 16 5 C 0.11 1.66 10.50 -17.55 -0.18 1.48 16 6 C -0.10 -1.39 4.97 -104.48 -0.52 -1.91 16 7 C 0.12 1.71 2.81 -68.86 -0.19 1.52 16 8 H 0.08 1.18 7.69 -51.93 -0.40 0.78 16 9 C -0.18 -2.18 9.14 37.16 0.34 -1.84 16 10 N -0.68 -11.59 4.93 -107.96 -0.53 -12.12 16 11 C 0.08 1.54 4.38 -3.83 -0.02 1.52 16 12 C 0.07 1.64 0.57 -155.66 -0.09 1.55 16 13 C -0.13 -3.07 7.92 37.16 0.29 -2.77 16 14 C -0.12 -2.90 8.09 37.16 0.30 -2.60 16 15 C -0.51 -13.52 8.01 -34.44 -0.28 -13.79 16 16 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 17 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 18 N -0.88 -24.41 9.35 55.43 0.52 -23.89 16 19 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.08 -0.95 9.51 -39.28 -0.37 -1.32 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 26 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 27 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 28 H 0.15 2.19 7.27 -52.48 -0.38 1.81 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.06 0.83 7.45 -51.93 -0.39 0.44 16 32 H 0.34 5.70 5.89 -39.29 -0.23 5.47 16 33 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 34 H 0.02 0.32 7.44 -51.93 -0.39 -0.07 16 35 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 36 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 1.99 6.07 -51.93 -0.32 1.68 16 40 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 41 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 332.50 15.07 5.01 5.01 Total: -1.00 -28.37 332.50 -8.33 -36.70 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.91 Total: 3.92 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -1.25 Total: -18.31 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: -0.15 Total: -43.33 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.37 -8.33 -36.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414165708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.340 kcal (2) G-P(sol) polarization free energy of solvation -28.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds