Wall clock time and date at job start Mon Mar 30 2020 19:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 F 1.39896 * 109.46934 * 2 1 4 4 F 1.39898 * 109.47263 * 239.99763 * 2 1 3 5 5 C 1.53000 * 109.47088 * 119.99484 * 2 1 3 6 6 N 1.46900 * 109.47480 * 174.24760 * 5 2 1 7 7 C 1.46957 * 110.99958 * 76.77582 * 6 5 2 8 8 C 1.53042 * 109.36521 * 183.19297 * 7 6 5 9 9 N 1.46956 * 109.36410 * 301.60167 * 8 7 6 10 10 C 1.46904 * 111.00032 * 183.18916 * 9 8 7 11 11 C 1.52997 * 109.47222 * 169.99674 * 10 9 8 12 12 C 1.50703 * 109.47359 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99814 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00040 * 179.72627 * 12 11 10 15 15 N 1.31515 * 119.99968 * 180.27859 * 14 12 11 16 16 Si 1.86794 * 120.00191 * 0.27527 * 14 12 11 17 17 H 1.48501 * 109.46986 * 89.99926 * 16 14 12 18 18 H 1.48501 * 109.47148 * 210.00046 * 16 14 12 19 19 H 1.48500 * 109.47452 * 330.00110 * 16 14 12 20 20 C 1.46952 * 110.88065 * 59.32160 * 9 8 7 21 21 C 1.46956 * 111.00365 * 200.58048 * 6 5 2 22 22 H 1.09003 * 109.46941 * 300.00345 * 1 2 3 23 23 H 1.08995 * 109.46782 * 60.00011 * 1 2 3 24 24 H 1.09000 * 109.46804 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46932 * 54.24688 * 5 2 1 26 26 H 1.08998 * 109.47302 * 294.25243 * 5 2 1 27 27 H 1.08995 * 109.48796 * 63.22383 * 7 6 5 28 28 H 1.09001 * 109.48575 * 303.16155 * 7 6 5 29 29 H 1.09000 * 109.49294 * 181.63302 * 8 7 6 30 30 H 1.09004 * 109.49147 * 61.56847 * 8 7 6 31 31 H 1.09000 * 109.47419 * 49.99597 * 10 9 8 32 32 H 1.09001 * 109.47130 * 289.99795 * 10 9 8 33 33 H 1.09003 * 109.46671 * 60.00356 * 11 10 9 34 34 H 1.09001 * 109.47167 * 300.00098 * 11 10 9 35 35 H 0.97001 * 120.00444 * 179.97438 * 15 14 12 36 36 H 1.08995 * 109.49141 * 60.64895 * 20 9 8 37 37 H 1.09004 * 109.48779 * 180.70901 * 20 9 8 38 38 H 1.08997 * 109.48533 * 296.77598 * 21 6 5 39 39 H 1.08995 * 109.48564 * 56.84264 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0401 -0.7211 1.2493 6 7 3.5025 -0.8426 1.1820 7 6 4.1525 0.4348 1.5067 8 6 5.6676 0.2880 1.3481 9 7 6.1483 -0.7837 2.2312 10 6 7.6108 -0.9051 2.1638 11 6 8.0957 -1.8473 3.2675 12 6 9.5960 -1.9723 3.1980 13 1 10.1483 -1.4333 2.4424 14 6 10.2639 -2.7699 4.1027 15 7 11.5736 -2.8747 4.0455 16 14 9.3086 -3.7017 5.4099 17 1 8.9302 -5.0392 4.8872 18 1 10.1544 -3.8641 6.6196 19 1 8.0818 -2.9426 5.7619 20 6 5.4984 -2.0611 1.9065 21 6 3.9832 -1.9143 2.0651 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.5950 -1.7148 1.3024 26 1 1.7632 -0.1513 2.1363 27 1 3.9195 0.7103 2.5352 28 1 3.7895 1.2095 0.8312 29 1 6.1540 1.2258 1.6163 30 1 5.9025 0.0392 0.3132 31 1 8.0636 0.0770 2.2997 32 1 7.8977 -1.3061 1.1917 33 1 7.6430 -2.8295 3.1315 34 1 7.8088 -1.4463 4.2396 35 1 12.0436 -3.4356 4.6823 36 1 5.7314 -2.3366 0.8780 37 1 5.8614 -2.8359 2.5819 38 1 3.7483 -1.6655 3.1000 39 1 3.4969 -2.8521 1.7968 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308106921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:07:22 Heat of formation + Delta-G solvation = -94.681268 kcal Electronic energy + Delta-G solvation = -20510.533730 eV Core-core repulsion = 17123.669547 eV Total energy + Delta-G solvation = -3386.864184 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 262.155 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -49.05765 -47.04187 -39.13910 -35.92021 -33.19342 -32.32682 -30.87505 -30.24114 -27.71583 -25.06125 -23.63299 -23.02568 -21.74565 -20.19631 -19.54614 -17.77429 -17.06997 -16.74779 -16.66776 -15.45166 -15.04819 -14.78735 -14.48054 -14.19895 -14.01600 -13.85849 -13.67127 -13.40560 -13.18636 -13.01159 -12.72502 -12.60309 -12.42000 -12.24836 -11.76773 -11.53089 -11.40435 -11.09725 -11.00920 -10.72397 -10.53110 -9.89227 -9.86314 -9.62146 -9.18828 -8.52793 -8.51104 -7.82902 -6.02899 -4.00906 3.32265 3.38798 3.39762 3.45443 3.70638 3.94451 4.12451 4.36456 4.46473 4.47277 4.80869 4.94136 5.03091 5.18551 5.23935 5.31118 5.36199 5.41336 5.48680 5.51273 5.53550 5.67559 5.89845 6.06934 6.09031 6.17728 6.26298 6.39586 6.77025 6.78363 6.89504 7.17004 7.32334 7.60839 7.64824 7.86611 8.54953 9.01505 9.59558 11.10575 Molecular weight = 262.16amu Principal moments of inertia in cm(-1) A = 0.046575 B = 0.003906 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.037638 B = 7167.450743 C = 7442.032759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.294 3.706 3 F -0.201 7.201 4 F -0.191 7.191 5 C 0.013 3.987 6 N -0.536 5.536 7 C 0.046 3.954 8 C 0.057 3.943 9 N -0.544 5.544 10 C 0.071 3.929 11 C -0.006 4.006 12 C -0.521 4.521 13 H 0.071 0.929 14 C 0.067 3.933 15 N -0.904 5.904 16 Si 0.880 3.120 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.263 1.263 20 C 0.055 3.945 21 C 0.060 3.940 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.101 0.899 26 H 0.066 0.934 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.038 0.962 31 H 0.067 0.933 32 H 0.027 0.973 33 H 0.010 0.990 34 H 0.024 0.976 35 H 0.263 0.737 36 H 0.040 0.960 37 H 0.087 0.913 38 H 0.044 0.956 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.346 5.011 -6.117 25.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.257 3.743 3 F -0.182 7.182 4 F -0.172 7.172 5 C -0.117 4.117 6 N -0.260 5.260 7 C -0.082 4.082 8 C -0.071 4.071 9 N -0.269 5.269 10 C -0.055 4.055 11 C -0.044 4.044 12 C -0.559 4.559 13 H 0.089 0.911 14 C -0.134 4.134 15 N -0.543 5.543 16 Si 0.708 3.292 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.188 1.188 20 C -0.073 4.073 21 C -0.068 4.068 22 H 0.106 0.894 23 H 0.101 0.899 24 H 0.108 0.892 25 H 0.119 0.881 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.029 0.971 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.106 0.894 38 H 0.062 0.938 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.146 4.944 -6.053 25.380 hybrid contribution -0.217 -0.493 0.589 0.798 sum -24.363 4.450 -5.463 25.362 Atomic orbital electron populations 1.22762 0.91760 1.05415 1.05317 1.21143 0.92891 0.75535 0.84712 1.92934 1.90223 1.38140 1.96880 1.93029 1.90563 1.80737 1.52863 1.23090 0.91040 1.02201 0.95345 1.62100 1.02870 1.06974 1.54091 1.22531 0.94733 0.90874 1.00069 1.22097 0.93631 0.95959 0.95435 1.62285 1.07979 1.04754 1.51924 1.22114 0.83524 1.00885 0.99009 1.19566 0.96470 0.93887 0.94484 1.21096 0.90061 1.28470 1.16302 0.91121 1.24999 0.94726 0.96332 0.97354 1.69916 1.07186 1.39900 1.37338 0.86762 0.80471 0.80480 0.81524 1.20362 1.21435 1.18798 1.22158 0.92019 0.92977 1.00153 1.22237 0.96185 0.93773 0.94568 0.89383 0.89897 0.89226 0.88072 0.91579 0.93931 0.89168 0.90374 0.94383 0.91446 0.95444 0.97133 0.95804 0.92744 0.94207 0.89436 0.93780 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.13 9.38 37.16 0.35 -0.78 16 2 C 0.29 2.83 2.23 -26.73 -0.06 2.77 16 3 F -0.20 -2.28 14.44 2.25 0.03 -2.25 16 4 F -0.19 -2.37 16.88 2.25 0.04 -2.33 16 5 C 0.01 0.12 4.66 -3.82 -0.02 0.10 16 6 N -0.54 -6.84 4.46 -234.48 -1.05 -7.89 16 7 C 0.05 0.61 5.35 -3.77 -0.02 0.59 16 8 C 0.06 0.88 5.61 -3.77 -0.02 0.86 16 9 N -0.54 -9.72 4.71 -234.47 -1.10 -10.82 16 10 C 0.07 1.49 4.90 -3.82 -0.02 1.47 16 11 C -0.01 -0.16 3.97 -27.88 -0.11 -0.27 16 12 C -0.52 -15.06 9.66 -34.44 -0.33 -15.40 16 13 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -28.21 13.96 55.43 0.77 -27.43 16 16 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 20 C 0.06 0.90 5.41 -3.77 -0.02 0.88 16 21 C 0.06 0.78 5.56 -3.77 -0.02 0.76 16 22 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.10 0.76 7.83 -51.92 -0.41 0.36 16 26 H 0.07 0.55 7.98 -51.93 -0.41 0.14 16 27 H 0.04 0.57 8.13 -51.93 -0.42 0.15 16 28 H 0.09 1.16 5.57 -51.93 -0.29 0.87 16 29 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.40 8.03 -51.93 -0.42 0.99 16 32 H 0.03 0.58 8.12 -51.93 -0.42 0.16 16 33 H 0.01 0.25 5.93 -51.93 -0.31 -0.06 16 34 H 0.02 0.60 7.19 -51.93 -0.37 0.22 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 1.50 6.34 -51.93 -0.33 1.17 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.86 7.99 -51.93 -0.42 0.44 16 LS Contribution 311.20 15.07 4.69 4.69 Total: -1.00 -32.15 311.20 -8.00 -40.14 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -6.34 Total: -4.27 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -0.37 Total: -7.13 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: -1.38 Total: -46.14 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.07 Total: -4.58 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.15 -8.00 -40.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308106921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.539 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds