Wall clock time and date at job start Mon Mar 30 2020 19:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00314 * 2 1 4 4 H 1.48495 * 109.47478 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46918 * 300.00594 * 3 2 1 6 6 H 1.48505 * 109.47031 * 60.00067 * 3 2 1 7 7 C 1.37879 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99748 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00380 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47097 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00001 * 180.02562 * 10 9 7 12 12 O 1.21656 * 119.99951 * 359.97438 * 11 10 9 13 13 C 1.46983 * 120.00168 * 180.02562 * 11 10 9 14 14 C 1.35806 * 125.12939 * 179.97438 * 13 11 10 15 15 C 1.46252 * 106.07974 * 179.97438 * 14 13 11 16 16 C 1.39735 * 134.13414 * 179.97438 * 15 14 13 17 17 C 1.37789 * 119.57189 * 180.02562 * 16 15 14 18 18 F 1.35102 * 119.87014 * 179.97438 * 17 16 15 19 19 C 1.39045 * 120.25359 * 359.70890 * 17 16 15 20 20 C 1.37749 * 120.72385 * 0.57095 * 19 17 16 21 21 C 1.39008 * 120.02390 * 359.44930 * 20 19 17 22 22 O 1.34793 * 133.11867 * 180.25619 * 21 20 19 23 23 H 0.96997 * 119.99726 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46767 * 60.00140 * 9 7 2 25 25 H 1.08999 * 109.46669 * 300.00427 * 9 7 2 26 26 H 0.97001 * 120.00551 * 0.02562 * 10 9 7 27 27 H 1.08001 * 126.96585 * 359.97438 * 14 13 11 28 28 H 1.08001 * 120.21373 * 0.04115 * 16 15 14 29 29 H 1.08004 * 119.63609 * 180.27486 * 19 17 16 30 30 H 1.08002 * 119.99044 * 179.73183 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 1.7537 -4.8834 -0.0025 12 8 0.5577 -5.1057 -0.0017 13 6 2.7089 -6.0006 -0.0032 14 6 2.3724 -7.3163 -0.0035 15 6 3.6336 -8.0569 -0.0047 16 6 3.9648 -9.4144 -0.0051 17 6 5.2902 -9.7910 -0.0059 18 9 5.6173 -11.1018 -0.0058 19 6 6.2923 -8.8271 -0.0125 20 6 5.9787 -7.4858 -0.0065 21 6 4.6484 -7.0825 -0.0052 22 8 4.0522 -5.8737 -0.0044 23 1 -0.4849 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8897 26 1 3.1567 -3.4355 -0.0021 27 1 1.3755 -7.7317 -0.0028 28 1 3.1869 -10.1636 -0.0050 29 1 7.3280 -9.1335 -0.0176 30 1 6.7667 -6.7472 -0.0073 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787629708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:04:28 Heat of formation + Delta-G solvation = -57.902510 kcal Electronic energy + Delta-G solvation = -18144.014409 eV Core-core repulsion = 14820.129446 eV Total energy + Delta-G solvation = -3323.884963 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.074 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.12846 -42.60299 -38.90774 -37.73280 -34.48904 -32.99933 -32.46179 -30.27020 -29.89253 -27.47088 -24.55426 -22.93304 -22.54496 -21.58693 -20.28947 -18.53403 -17.94490 -17.32647 -16.50304 -16.26570 -15.72239 -15.70716 -15.34129 -14.65877 -14.41026 -14.33331 -13.87091 -13.67172 -13.25279 -12.92754 -12.84487 -12.16247 -12.08533 -11.94222 -11.29026 -11.03722 -10.97174 -10.44669 -10.42475 -9.71373 -9.46720 -8.86671 -8.73243 -8.53690 -8.06894 -6.23913 -4.31335 0.34828 0.87656 1.76715 2.39545 3.20455 3.22314 3.27689 3.30823 3.53311 3.58874 3.96631 4.24918 4.30105 4.48402 4.66671 4.84776 4.97847 5.12873 5.25133 5.40782 5.50719 5.71267 5.74659 5.86234 6.11474 6.30290 6.78715 7.09760 7.19182 7.36789 7.55651 7.85445 8.36964 8.56534 8.81977 9.35060 10.86293 Molecular weight = 263.07amu Principal moments of inertia in cm(-1) A = 0.043723 B = 0.003607 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.239760 B = 7760.225267 C = 8385.319173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.246 3.754 10 N -0.690 5.690 11 C 0.575 3.425 12 O -0.525 6.525 13 C 0.009 3.991 14 C -0.136 4.136 15 C -0.111 4.111 16 C -0.100 4.100 17 C 0.078 3.922 18 F -0.138 7.138 19 C -0.124 4.124 20 C -0.075 4.075 21 C 0.055 3.945 22 O -0.178 6.178 23 H 0.267 0.733 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.399 0.601 27 H 0.173 0.827 28 H 0.143 0.857 29 H 0.148 0.852 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.975 -16.536 -0.017 20.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.584 4.584 8 H 0.084 0.916 9 C 0.126 3.874 10 N -0.336 5.336 11 C 0.358 3.642 12 O -0.405 6.405 13 C -0.042 4.042 14 C -0.157 4.157 15 C -0.113 4.113 16 C -0.119 4.119 17 C 0.059 3.941 18 F -0.117 7.117 19 C -0.143 4.143 20 C -0.094 4.094 21 C 0.006 3.994 22 O -0.079 6.079 23 H 0.076 0.924 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.232 0.768 27 H 0.190 0.810 28 H 0.161 0.839 29 H 0.166 0.834 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 11.092 -16.278 -0.017 19.698 hybrid contribution 0.837 0.627 0.000 1.046 sum 11.930 -15.651 -0.017 19.679 Atomic orbital electron populations 1.69978 1.06117 1.27397 1.48666 1.24949 0.94948 0.99536 0.94506 0.86319 0.79851 0.82713 0.77810 1.19557 1.20726 1.20721 1.21228 0.93434 0.90174 1.53587 0.91622 1.19309 0.88180 0.81585 0.98358 1.46525 1.12098 1.05524 1.69469 1.16789 0.86126 0.81841 0.79446 1.90866 1.13732 1.83826 1.52064 1.22723 0.80201 0.96547 1.04725 1.22651 0.98223 0.90680 1.04156 1.19649 0.93191 0.93318 1.05106 1.20450 0.95115 0.94797 1.01513 1.17326 0.92965 0.78147 1.05689 1.91508 1.93299 1.32625 1.94224 1.20887 0.99712 0.91116 1.02556 1.19785 0.91895 0.95572 1.02121 1.19763 0.94296 0.82732 1.02621 1.84113 1.18714 1.29414 1.75649 0.92364 0.94798 0.94789 0.76761 0.80975 0.83917 0.83424 0.83623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.44 13.29 55.43 0.74 -24.70 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.91 20.48 29.54 -169.99 -5.02 15.46 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.55 -14.50 9.28 -34.44 -0.32 -14.82 16 8 H 0.07 1.64 7.60 -52.49 -0.40 1.24 16 9 C 0.25 6.32 5.43 -5.20 -0.03 6.29 16 10 N -0.69 -14.51 5.54 -62.71 -0.35 -14.86 16 11 C 0.58 11.59 7.80 -12.72 -0.10 11.49 16 12 O -0.53 -12.16 16.83 5.23 0.09 -12.07 16 13 C 0.01 0.14 7.07 -36.91 -0.26 -0.12 16 14 C -0.14 -1.95 10.80 -37.24 -0.40 -2.35 16 15 C -0.11 -1.43 6.38 -105.19 -0.67 -2.10 16 16 C -0.10 -1.07 10.08 -39.19 -0.40 -1.46 16 17 C 0.08 0.79 7.29 -39.45 -0.29 0.50 16 18 F -0.14 -1.42 17.26 2.25 0.04 -1.38 16 19 C -0.12 -1.08 9.99 -39.46 -0.39 -1.47 16 20 C -0.08 -0.73 10.06 -39.48 -0.40 -1.13 16 21 C 0.05 0.70 7.40 -38.37 -0.28 0.42 16 22 O -0.18 -2.67 10.28 2.60 0.03 -2.64 16 23 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.40 7.45 8.04 -40.82 -0.33 7.12 16 27 H 0.17 2.21 8.06 -52.49 -0.42 1.78 16 28 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.15 0.87 8.06 -52.48 -0.42 0.44 16 30 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 283.54 15.07 4.27 4.27 Total: -1.00 -30.22 283.54 -6.24 -36.46 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -2.40 Total: 2.55 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -3.64 Total: -3.09 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.39 Total: -39.56 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.11 Total: -14.72 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.22 -6.24 -36.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787629708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.439 kcal (2) G-P(sol) polarization free energy of solvation -30.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds