Wall clock time and date at job start Mon Mar 30 2020 19:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00314 * 2 1 4 4 H 1.48495 * 109.47478 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46918 * 300.00594 * 3 2 1 6 6 H 1.48505 * 109.47031 * 60.00067 * 3 2 1 7 7 C 1.37879 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99748 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00380 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47097 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00001 * 180.02562 * 10 9 7 12 12 O 1.21656 * 119.99951 * 359.97438 * 11 10 9 13 13 C 1.46983 * 120.00168 * 180.02562 * 11 10 9 14 14 C 1.35806 * 125.12939 * 179.97438 * 13 11 10 15 15 C 1.46252 * 106.07974 * 179.97438 * 14 13 11 16 16 C 1.39735 * 134.13414 * 179.97438 * 15 14 13 17 17 C 1.37789 * 119.57189 * 180.02562 * 16 15 14 18 18 F 1.35102 * 119.87014 * 179.97438 * 17 16 15 19 19 C 1.39045 * 120.25359 * 359.70890 * 17 16 15 20 20 C 1.37749 * 120.72385 * 0.57095 * 19 17 16 21 21 C 1.39008 * 120.02390 * 359.44930 * 20 19 17 22 22 O 1.34793 * 133.11867 * 180.25619 * 21 20 19 23 23 H 0.96997 * 119.99726 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46767 * 60.00140 * 9 7 2 25 25 H 1.08999 * 109.46669 * 300.00427 * 9 7 2 26 26 H 0.97001 * 120.00551 * 0.02562 * 10 9 7 27 27 H 1.08001 * 126.96585 * 359.97438 * 14 13 11 28 28 H 1.08001 * 120.21373 * 0.04115 * 16 15 14 29 29 H 1.08004 * 119.63609 * 180.27486 * 19 17 16 30 30 H 1.08002 * 119.99044 * 179.73183 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 1.7537 -4.8834 -0.0025 12 8 0.5577 -5.1057 -0.0017 13 6 2.7089 -6.0006 -0.0032 14 6 2.3724 -7.3163 -0.0035 15 6 3.6336 -8.0569 -0.0047 16 6 3.9648 -9.4144 -0.0051 17 6 5.2902 -9.7910 -0.0059 18 9 5.6173 -11.1018 -0.0058 19 6 6.2923 -8.8271 -0.0125 20 6 5.9787 -7.4858 -0.0065 21 6 4.6484 -7.0825 -0.0052 22 8 4.0522 -5.8737 -0.0044 23 1 -0.4849 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8897 26 1 3.1567 -3.4355 -0.0021 27 1 1.3755 -7.7317 -0.0028 28 1 3.1869 -10.1636 -0.0050 29 1 7.3280 -9.1335 -0.0176 30 1 6.7667 -6.7472 -0.0073 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787629708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:04:27 Heat of formation + Delta-G solvation = -77.602554 kcal Electronic energy + Delta-G solvation = -18144.868667 eV Core-core repulsion = 14820.129446 eV Total energy + Delta-G solvation = -3324.739221 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.074 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.92600 -43.66144 -40.54089 -38.65339 -36.36253 -34.45924 -34.01860 -31.16420 -31.07246 -29.29416 -25.98882 -24.24650 -23.74041 -22.76655 -21.75833 -20.00374 -18.89937 -18.42650 -17.88620 -17.62745 -17.13996 -16.83040 -16.57310 -16.25168 -16.00541 -15.41090 -15.15899 -14.47514 -14.38271 -14.25955 -14.08260 -14.04762 -13.74320 -12.96178 -12.95895 -12.76574 -12.26440 -12.09607 -11.53284 -11.44062 -11.40324 -10.85904 -10.09617 -9.62503 -9.44650 -8.31483 -6.47983 -0.64976 0.00957 0.65812 1.27507 1.44175 1.44694 1.58434 2.00498 2.16557 2.38642 2.41483 3.02470 3.04001 3.37377 3.45890 3.78489 3.90257 4.03566 4.22111 4.38680 4.70009 4.79170 4.97134 4.98927 5.02147 5.13111 5.17637 5.27615 5.41469 5.58283 5.78067 5.86524 6.56509 6.65217 7.04484 7.26089 8.80782 Molecular weight = 263.07amu Principal moments of inertia in cm(-1) A = 0.043723 B = 0.003607 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.239760 B = 7760.225267 C = 8385.319173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.985 3.015 4 H -0.255 1.255 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.559 4.559 8 H 0.082 0.918 9 C 0.262 3.738 10 N -0.689 5.689 11 C 0.581 3.419 12 O -0.565 6.565 13 C -0.025 4.025 14 C -0.111 4.111 15 C -0.131 4.131 16 C -0.098 4.098 17 C 0.075 3.925 18 F -0.137 7.137 19 C -0.102 4.102 20 C -0.075 4.075 21 C 0.042 3.958 22 O -0.186 6.186 23 H 0.270 0.730 24 H 0.001 0.999 25 H 0.001 0.999 26 H 0.411 0.589 27 H 0.182 0.818 28 H 0.160 0.840 29 H 0.185 0.815 30 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.192 -17.574 -0.021 23.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.808 3.192 4 H -0.178 1.178 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.597 4.597 8 H 0.100 0.900 9 C 0.140 3.860 10 N -0.337 5.337 11 C 0.366 3.634 12 O -0.447 6.447 13 C -0.075 4.075 14 C -0.132 4.132 15 C -0.132 4.132 16 C -0.117 4.117 17 C 0.056 3.944 18 F -0.116 7.116 19 C -0.120 4.120 20 C -0.093 4.093 21 C -0.006 4.006 22 O -0.088 6.088 23 H 0.079 0.921 24 H 0.018 0.982 25 H 0.019 0.981 26 H 0.247 0.753 27 H 0.199 0.801 28 H 0.178 0.822 29 H 0.202 0.798 30 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 14.350 -17.350 -0.022 22.515 hybrid contribution -0.068 0.694 0.001 0.697 sum 14.281 -16.656 -0.021 21.941 Atomic orbital electron populations 1.70124 1.08129 1.28663 1.49665 1.26021 0.95808 1.03755 0.93703 0.85104 0.79013 0.77294 0.77777 1.17848 1.20340 1.20329 1.21600 0.94304 0.90450 1.53342 0.89980 1.18775 0.88458 0.83482 0.95236 1.46220 1.11937 1.05123 1.70391 1.17103 0.86403 0.82181 0.77692 1.90826 1.15744 1.84617 1.53517 1.21776 0.80789 0.95437 1.09481 1.22910 0.99490 0.90149 1.00672 1.19663 0.92244 0.94269 1.07042 1.20636 0.96238 0.94190 1.00643 1.17487 0.93078 0.78479 1.05367 1.91522 1.93223 1.32642 1.94167 1.21323 1.01177 0.90144 0.99350 1.20187 0.91074 0.96674 1.01408 1.20312 0.95644 0.81864 1.02797 1.84040 1.17721 1.30679 1.76383 0.92083 0.98153 0.98141 0.75309 0.80094 0.82235 0.79805 0.80857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.92 13.29 21.45 0.28 -54.64 16 2 C 0.01 0.39 5.46 84.65 0.46 0.86 16 3 Si 0.99 41.88 29.54 68.60 2.03 43.91 16 4 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.56 -30.24 9.28 25.60 0.24 -30.00 16 8 H 0.08 4.07 7.60 -2.91 -0.02 4.04 16 9 C 0.26 14.25 5.43 85.64 0.46 14.71 16 10 N -0.69 -30.29 5.54 -470.54 -2.61 -32.90 16 11 C 0.58 24.52 7.80 86.53 0.67 25.19 16 12 O -0.57 -27.68 16.83 -4.21 -0.07 -27.75 16 13 C -0.02 -0.83 7.07 24.00 0.17 -0.66 16 14 C -0.11 -3.16 10.80 23.79 0.26 -2.90 16 15 C -0.13 -3.14 6.38 -20.24 -0.13 -3.27 16 16 C -0.10 -1.85 10.08 22.53 0.23 -1.62 16 17 C 0.08 1.25 7.29 22.36 0.16 1.41 16 18 F -0.14 -2.34 17.26 44.97 0.78 -1.56 16 19 C -0.10 -1.31 9.99 22.35 0.22 -1.09 16 20 C -0.08 -1.19 10.06 22.34 0.22 -0.97 16 21 C 0.04 1.01 7.40 23.05 0.17 1.18 16 22 O -0.19 -5.52 10.28 -13.61 -0.14 -5.65 16 23 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 24 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 25 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 26 H 0.41 15.73 8.04 -92.71 -0.74 14.99 16 27 H 0.18 4.63 8.06 -2.91 -0.02 4.60 16 28 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 29 H 0.18 1.09 8.06 -2.91 -0.02 1.06 16 30 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -67.85 283.54 3.86 -63.99 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.45 Total: 11.78 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 3.14 Total: 2.84 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -2.32 Total: -87.54 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.21 Total: -33.41 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.78 Total: -1.56 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -67.85 3.86 -63.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787629708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.614 kcal (2) G-P(sol) polarization free energy of solvation -67.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds