Wall clock time and date at job start Mon Mar 30 2020 19:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47296 * 2 1 4 4 C 1.53000 * 109.46859 * 239.99895 * 2 1 3 5 5 C 1.50699 * 109.47046 * 294.99879 * 4 2 1 6 6 C 1.38235 * 119.61611 * 124.73061 * 5 4 2 7 7 C 1.38625 * 119.15949 * 179.70822 * 6 5 4 8 8 C 1.38670 * 118.42126 * 0.55313 * 7 6 5 9 9 C 1.50706 * 120.41834 * 179.70995 * 8 7 6 10 10 N 1.46904 * 109.46780 * 270.01978 * 9 8 7 11 11 C 1.46897 * 110.99657 * 179.97438 * 10 9 8 12 12 H 1.08999 * 109.47463 * 35.00204 * 11 10 9 13 13 C 1.53005 * 109.47408 * 274.99868 * 11 10 9 14 14 C 1.50700 * 109.47314 * 154.99878 * 11 10 9 15 15 H 1.08005 * 119.99464 * 34.99782 * 14 11 10 16 16 C 1.37870 * 120.00490 * 214.99661 * 14 11 10 17 17 N 1.31514 * 119.99915 * 184.91365 * 16 14 11 18 18 Si 1.86804 * 119.99860 * 4.91780 * 16 14 11 19 19 H 1.48492 * 109.46997 * 84.82876 * 18 16 14 20 20 H 1.48499 * 109.46866 * 204.83242 * 18 16 14 21 21 H 1.48494 * 109.46841 * 324.82753 * 18 16 14 22 22 C 1.38182 * 119.16595 * 359.73103 * 8 7 6 23 23 N 1.31849 * 119.62295 * 305.00083 * 5 4 2 24 24 H 1.09000 * 109.47372 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47099 * 59.99610 * 1 2 3 26 26 H 1.09006 * 109.47119 * 299.99550 * 1 2 3 27 27 H 1.09008 * 109.47186 * 120.00213 * 2 1 3 28 28 H 1.09006 * 109.46670 * 60.00174 * 3 2 1 29 29 H 1.08994 * 109.47364 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.46875 * 300.00224 * 3 2 1 31 31 H 1.08998 * 109.47274 * 55.00010 * 4 2 1 32 32 H 1.09005 * 109.46889 * 175.00298 * 4 2 1 33 33 H 1.08007 * 120.41598 * 359.97438 * 6 5 4 34 34 H 1.08006 * 120.78768 * 180.25481 * 7 6 5 35 35 H 1.08998 * 109.47132 * 30.02167 * 9 8 7 36 36 H 1.08994 * 109.47029 * 150.02217 * 9 8 7 37 37 H 1.00899 * 110.99860 * 56.05111 * 10 9 8 38 38 H 1.08996 * 109.47128 * 295.04818 * 13 11 10 39 39 H 1.08999 * 109.46727 * 55.04634 * 13 11 10 40 40 H 1.08997 * 109.47168 * 175.04514 * 13 11 10 41 41 H 0.97011 * 119.99666 * 180.02562 * 17 16 14 42 42 H 1.07999 * 119.62011 * 180.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 -2.1733 -1.1888 6 6 0.9227 -2.7284 -2.2311 7 6 0.5661 -4.0665 -2.1685 8 6 0.9373 -4.7968 -1.0496 9 6 0.5676 -6.2530 -0.9317 10 7 -0.7388 -6.3746 -0.2710 11 6 -1.1329 -7.7835 -0.1391 12 1 -0.2475 -8.3931 0.0416 13 6 -1.8156 -8.2451 -1.4282 14 6 -2.0889 -7.9317 1.0164 15 1 -2.7988 -7.1473 1.2339 16 6 -2.0575 -9.0685 1.7958 17 7 -2.9537 -9.2416 2.7426 18 14 -0.7419 -10.3629 1.5070 19 1 0.4905 -9.9894 2.2464 20 1 -1.2290 -11.6800 1.9898 21 1 -0.4416 -10.4480 0.0553 22 6 1.6500 -4.1723 -0.0439 23 7 1.9772 -2.8983 -0.1400 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 0.5138 0.8901 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9562 0.8901 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9562 -0.8899 31 1 1.6053 -0.2618 -2.1370 32 1 3.1263 -0.6444 -1.2951 33 1 0.6463 -2.1281 -3.0854 34 1 0.0083 -4.5281 -2.9699 35 1 0.5144 -6.6960 -1.9262 36 1 1.3227 -6.7730 -0.3423 37 1 -1.4437 -5.8469 -0.7637 38 1 -2.7473 -7.6957 -1.5628 39 1 -1.1568 -8.0563 -2.2758 40 1 -2.0288 -9.3121 -1.3645 41 1 -2.9314 -10.0414 3.2912 42 1 1.9432 -4.7342 0.8306 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663170586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:07:15 Heat of formation + Delta-G solvation = 10.316808 kcal Electronic energy + Delta-G solvation = -19260.739878 eV Core-core repulsion = 16432.658283 eV Total energy + Delta-G solvation = -2828.081596 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 262.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.27868 -36.88278 -35.96222 -33.14617 -32.05328 -31.64294 -29.34490 -27.24252 -26.99981 -25.27281 -23.98920 -23.42169 -21.25475 -20.07472 -19.99364 -17.11007 -16.60794 -16.10785 -15.32495 -15.06072 -14.66155 -14.40818 -14.25049 -13.73158 -13.39352 -13.13226 -12.99510 -12.86978 -12.45358 -12.37427 -12.29989 -12.05393 -11.91905 -11.60003 -11.17943 -11.06836 -11.02840 -10.89265 -10.72135 -10.71079 -10.16838 -9.79432 -9.64200 -9.28416 -9.15030 -8.66557 -8.50954 -7.42832 -6.06220 -4.03666 1.24855 1.42418 3.27638 3.34732 3.35923 3.88370 4.34927 4.40901 4.59989 4.86363 4.86751 4.95216 5.06399 5.08923 5.17703 5.21787 5.44725 5.48618 5.49491 5.56057 5.60353 5.67345 5.76740 5.78871 5.88144 5.97533 6.03529 6.09172 6.19005 6.21851 6.25796 6.31190 6.34935 6.49580 6.56075 6.75661 6.87815 7.09621 7.66873 7.90897 8.15433 8.30079 8.64851 9.01750 9.56078 11.07406 Molecular weight = 262.17amu Principal moments of inertia in cm(-1) A = 0.030152 B = 0.003814 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.414171 B = 7338.694499 C = 7618.129468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.146 4.146 4 C -0.061 4.061 5 C 0.122 3.878 6 C -0.174 4.174 7 C -0.072 4.072 8 C -0.123 4.123 9 C 0.095 3.905 10 N -0.668 5.668 11 C 0.179 3.821 12 H 0.037 0.963 13 C -0.171 4.171 14 C -0.492 4.492 15 H 0.076 0.924 16 C 0.070 3.930 17 N -0.900 5.900 18 Si 0.876 3.124 19 H -0.275 1.275 20 H -0.289 1.289 21 H -0.269 1.269 22 C 0.123 3.877 23 N -0.482 5.482 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.029 0.971 36 H 0.076 0.924 37 H 0.328 0.672 38 H 0.049 0.951 39 H 0.019 0.981 40 H 0.050 0.950 41 H 0.264 0.736 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.071 15.693 -10.695 21.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.204 4.204 4 C -0.099 4.099 5 C -0.016 4.016 6 C -0.193 4.193 7 C -0.099 4.099 8 C -0.126 4.126 9 C -0.035 4.035 10 N -0.298 5.298 11 C 0.071 3.929 12 H 0.055 0.945 13 C -0.231 4.231 14 C -0.531 4.531 15 H 0.094 0.906 16 C -0.132 4.132 17 N -0.538 5.538 18 Si 0.703 3.297 19 H -0.201 1.201 20 H -0.215 1.215 21 H -0.194 1.194 22 C -0.035 4.035 23 N -0.191 5.191 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.101 0.899 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.047 0.953 36 H 0.095 0.905 37 H 0.145 0.855 38 H 0.068 0.932 39 H 0.038 0.962 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 10.741 15.977 -9.223 21.347 hybrid contribution -0.188 -1.532 -1.723 2.313 sum 10.553 14.445 -10.946 20.972 Atomic orbital electron populations 1.21835 0.95221 1.01960 1.01319 1.21062 0.95900 0.95513 0.98439 1.21847 1.00850 0.96042 1.01637 1.20581 1.01352 0.89174 0.98828 1.21124 0.94451 0.96058 0.89947 1.21865 1.01345 0.95834 1.00293 1.21475 0.97079 0.93803 0.97505 1.20980 0.98721 0.97942 0.94940 1.20895 0.95051 0.90064 0.97470 1.61037 1.01654 1.13989 1.53077 1.19686 0.95193 0.84320 0.93654 0.94467 1.22651 1.00188 1.01782 0.98458 1.20847 1.17000 1.04066 1.11148 0.90600 1.24980 0.95607 0.97775 0.94809 1.69895 1.34713 1.28010 1.21183 0.86902 0.82761 0.81289 0.78703 1.20081 1.21516 1.19359 1.22669 0.93470 0.89956 0.97373 1.67459 1.20587 1.06944 1.24126 0.92641 0.93016 0.92810 0.89904 0.92655 0.92747 0.92889 0.90745 0.90384 0.85435 0.85347 0.95268 0.90541 0.85473 0.93224 0.96161 0.93128 0.92644 0.82596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.01 37.16 0.33 -1.19 16 2 C -0.09 -0.90 2.85 -90.62 -0.26 -1.16 16 3 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16 4 C -0.06 -0.61 5.09 -27.88 -0.14 -0.75 16 5 C 0.12 1.55 5.16 -82.59 -0.43 1.12 16 6 C -0.17 -2.05 9.71 -39.44 -0.38 -2.44 16 7 C -0.07 -0.93 9.86 -39.28 -0.39 -1.32 16 8 C -0.12 -1.84 5.41 -104.48 -0.57 -2.40 16 9 C 0.10 1.57 5.64 -4.97 -0.03 1.54 16 10 N -0.67 -13.41 6.22 -109.22 -0.68 -14.09 16 11 C 0.18 4.12 2.23 -68.86 -0.15 3.97 16 12 H 0.04 0.88 4.95 -51.93 -0.26 0.62 16 13 C -0.17 -3.51 9.16 37.16 0.34 -3.17 16 14 C -0.49 -13.73 9.19 -34.44 -0.32 -14.04 16 15 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 17 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 18 Si 0.88 21.35 26.99 -169.99 -4.59 16.76 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.21 6.82 56.52 0.39 -5.82 16 22 C 0.12 1.87 10.86 -17.55 -0.19 1.68 16 23 N -0.48 -7.14 9.78 -9.47 -0.09 -7.23 16 24 H 0.05 0.70 7.38 -51.93 -0.38 0.32 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.98 7.80 -51.92 -0.41 0.58 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.13 1.17 7.95 -52.48 -0.42 0.75 16 34 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 35 H 0.03 0.45 7.32 -51.93 -0.38 0.07 16 36 H 0.08 1.27 8.01 -51.93 -0.42 0.86 16 37 H 0.33 6.27 8.47 -39.29 -0.33 5.94 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.02 0.35 7.35 -51.93 -0.38 -0.03 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 42 H 0.16 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 341.53 15.07 5.15 5.15 Total: -1.00 -30.39 341.53 -8.55 -38.94 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -7.18 Total: 4.25 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -1.93 Total: -17.08 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.00 Total: -48.02 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.59 Total: 16.76 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.39 -8.55 -38.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.257 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds