Wall clock time and date at job start Mon Mar 30 2020 19:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47150 * 2 1 4 4 C 1.53002 * 109.47150 * 120.00057 * 2 1 3 5 5 C 1.50693 * 109.47200 * 174.99757 * 4 2 1 6 6 C 1.38230 * 119.61884 * 124.99963 * 5 4 2 7 7 C 1.38630 * 119.16222 * 180.02562 * 6 5 4 8 8 C 1.38670 * 118.42064 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.41695 * 180.02562 * 8 7 6 10 10 N 1.46905 * 109.47066 * 90.00052 * 9 8 7 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.46917 * 324.99892 * 11 10 9 13 13 C 1.52993 * 109.47269 * 84.99904 * 11 10 9 14 14 C 1.50692 * 109.46945 * 205.00102 * 11 10 9 15 15 H 1.08004 * 120.00412 * 359.97438 * 14 11 10 16 16 C 1.37879 * 120.00142 * 180.02562 * 14 11 10 17 17 N 1.31514 * 119.99996 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 120.00298 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.46769 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47176 * 119.99714 * 18 16 14 21 21 H 1.48495 * 109.47112 * 240.00028 * 18 16 14 22 22 C 1.38181 * 119.16119 * 0.27117 * 8 7 6 23 23 N 1.31856 * 119.62041 * 305.01967 * 5 4 2 24 24 H 1.09001 * 109.46916 * 300.00004 * 1 2 3 25 25 H 1.08998 * 109.47030 * 59.99835 * 1 2 3 26 26 H 1.09000 * 109.47520 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47005 * 239.99519 * 2 1 3 28 28 H 1.08995 * 109.47280 * 299.99475 * 3 2 1 29 29 H 1.09001 * 109.47214 * 60.00179 * 3 2 1 30 30 H 1.09001 * 109.46861 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47184 * 54.99513 * 4 2 1 32 32 H 1.09000 * 109.46733 * 295.00234 * 4 2 1 33 33 H 1.08002 * 120.41894 * 0.04717 * 6 5 4 34 34 H 1.08001 * 120.78571 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.47558 * 330.00216 * 9 8 7 36 36 H 1.08998 * 109.47216 * 209.99878 * 9 8 7 37 37 H 1.00901 * 110.99869 * 56.04737 * 10 9 8 38 38 H 1.09000 * 109.47161 * 60.00137 * 13 11 10 39 39 H 1.09006 * 109.47343 * 180.02562 * 13 11 10 40 40 H 1.09004 * 109.47587 * 300.00069 * 13 11 10 41 41 H 0.97004 * 120.00312 * 179.97438 * 17 16 14 42 42 H 1.08005 * 119.61643 * 179.70430 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8295 1.1889 6 6 4.3045 -0.3421 2.2337 7 6 5.6853 -0.4461 2.1681 8 6 6.2501 -1.0385 1.0487 9 6 7.7462 -1.1754 0.9308 10 7 8.1683 -2.4558 1.5144 11 6 9.6244 -2.6239 1.4176 12 1 9.9808 -2.1770 0.4895 13 6 10.2974 -1.9352 2.6065 14 6 9.9625 -4.0923 1.4304 15 1 9.1745 -4.8273 1.5035 16 6 11.2779 -4.4977 1.3498 17 7 12.2375 -3.6027 1.2612 18 14 11.6971 -6.3180 1.3663 19 1 10.4472 -7.1128 1.4718 20 1 12.4052 -6.6743 0.1107 21 1 12.5720 -6.6139 2.5291 22 6 5.4239 -1.4972 0.0405 23 7 4.1134 -1.3876 0.1398 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6053 -1.7198 1.2952 32 1 1.7516 -0.1583 2.1369 33 1 3.8305 0.1136 3.0905 34 1 6.3064 -0.0737 2.9693 35 1 8.2292 -0.3564 1.4639 36 1 8.0323 -1.1434 -0.1204 37 1 7.6852 -3.2279 1.0800 38 1 9.9410 -2.3820 3.5347 39 1 11.3780 -2.0595 2.5345 40 1 10.0529 -0.8730 2.5973 41 1 13.1630 -3.8878 1.2049 42 1 5.8562 -1.9555 -0.8368 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663170592.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:07:18 Heat of formation + Delta-G solvation = 7.455528 kcal Electronic energy + Delta-G solvation = -19113.179718 eV Core-core repulsion = 16284.974048 eV Total energy + Delta-G solvation = -2828.205670 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 262.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.23912 -36.78233 -35.77466 -33.23847 -32.02723 -31.42651 -28.85269 -27.30858 -26.85559 -25.29814 -23.97124 -23.29136 -21.23111 -20.03552 -19.80373 -16.85192 -16.44846 -16.01802 -15.16691 -15.08013 -14.70786 -14.49350 -14.01235 -13.78402 -13.72348 -12.99925 -12.92801 -12.73802 -12.43755 -12.38950 -11.99816 -11.85724 -11.58915 -11.21626 -11.07187 -10.99013 -10.90179 -10.76805 -10.75759 -10.29925 -10.17539 -10.07202 -9.56162 -9.19113 -8.87897 -8.60799 -8.48651 -7.33550 -6.05701 -4.12230 1.27755 1.49560 3.27271 3.35245 3.39762 3.92376 4.34842 4.39002 4.60913 4.82477 4.85765 5.06730 5.08700 5.18297 5.23963 5.25946 5.43085 5.48839 5.51302 5.56959 5.63554 5.71372 5.73030 5.77563 5.86866 6.02512 6.05555 6.12786 6.21020 6.26152 6.35310 6.60948 6.83640 6.90326 7.09302 7.18087 7.44763 7.75226 7.84907 8.15599 8.23075 8.32989 8.61015 8.97911 9.54026 11.00642 Molecular weight = 262.17amu Principal moments of inertia in cm(-1) A = 0.040945 B = 0.003317 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.683081 B = 8438.251829 C = 8759.287776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.145 4.145 4 C -0.062 4.062 5 C 0.120 3.880 6 C -0.174 4.174 7 C -0.056 4.056 8 C -0.121 4.121 9 C 0.099 3.901 10 N -0.683 5.683 11 C 0.211 3.789 12 H 0.002 0.998 13 C -0.125 4.125 14 C -0.518 4.518 15 H 0.060 0.940 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.897 3.103 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.104 3.896 23 N -0.483 5.483 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.074 0.926 36 H 0.032 0.968 37 H 0.332 0.668 38 H 0.031 0.969 39 H 0.081 0.919 40 H 0.004 0.996 41 H 0.261 0.739 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.560 8.983 -0.674 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.202 4.202 4 C -0.100 4.100 5 C -0.018 4.018 6 C -0.193 4.193 7 C -0.082 4.082 8 C -0.123 4.123 9 C -0.031 4.031 10 N -0.314 5.314 11 C 0.104 3.896 12 H 0.020 0.980 13 C -0.183 4.183 14 C -0.557 4.557 15 H 0.079 0.921 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.725 3.275 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.209 1.209 22 C -0.054 4.054 23 N -0.191 5.191 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.149 0.851 38 H 0.051 0.949 39 H 0.100 0.900 40 H 0.023 0.977 41 H 0.071 0.929 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.841 8.922 -0.717 20.859 hybrid contribution 1.126 -0.839 -0.145 1.411 sum -17.715 8.083 -0.862 19.491 Atomic orbital electron populations 1.21849 0.95297 1.01685 1.01581 1.21055 0.95094 0.96190 0.98539 1.21825 1.01162 0.95942 1.01283 1.20574 0.89287 1.01423 0.98678 1.21083 0.96298 0.94352 0.90082 1.21917 0.94474 1.02936 1.00011 1.21483 0.94442 0.95381 0.96900 1.21040 0.97818 0.98439 0.95011 1.20827 0.88571 0.95935 0.97724 1.60810 1.09782 1.01349 1.59480 1.19137 0.80892 0.95832 0.93763 0.98009 1.21723 1.03251 0.94857 0.98481 1.21292 0.92463 0.91354 1.50580 0.92145 1.24921 0.96325 0.97793 0.94965 1.69904 0.99846 1.32873 1.50255 0.86459 0.78437 0.85084 0.77549 1.19723 1.21061 1.20949 1.22635 0.88476 0.96078 0.98168 1.67408 1.12436 1.14594 1.24699 0.92850 0.92739 0.92655 0.89995 0.92953 0.92929 0.92868 0.90300 0.90704 0.85406 0.84897 0.90810 0.95006 0.85093 0.94943 0.90027 0.97728 0.92941 0.83127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.19 37.16 0.34 -0.77 16 2 C -0.09 -0.85 2.85 -90.62 -0.26 -1.11 16 3 C -0.14 -1.34 9.01 37.16 0.33 -1.00 16 4 C -0.06 -0.62 5.09 -27.89 -0.14 -0.76 16 5 C 0.12 1.55 5.16 -82.59 -0.43 1.12 16 6 C -0.17 -2.16 9.71 -39.44 -0.38 -2.55 16 7 C -0.06 -0.78 9.86 -39.28 -0.39 -1.17 16 8 C -0.12 -1.87 5.41 -104.49 -0.57 -2.44 16 9 C 0.10 1.75 5.64 -4.97 -0.03 1.73 16 10 N -0.68 -14.45 6.29 -109.23 -0.69 -15.13 16 11 C 0.21 5.29 2.60 -68.87 -0.18 5.11 16 12 H 0.00 0.06 7.80 -51.93 -0.41 -0.34 16 13 C -0.12 -3.08 9.19 37.15 0.34 -2.74 16 14 C -0.52 -14.18 8.59 -34.44 -0.30 -14.48 16 15 H 0.06 1.64 7.62 -52.48 -0.40 1.24 16 16 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 17 N -0.89 -25.31 11.32 55.43 0.63 -24.69 16 18 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C 0.10 1.56 10.86 -17.55 -0.19 1.37 16 23 N -0.48 -7.11 9.78 -9.47 -0.09 -7.21 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.91 7.80 -51.93 -0.41 0.51 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.58 7.38 -51.93 -0.38 0.20 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.62 7.87 -51.93 -0.41 0.21 16 33 H 0.13 1.25 7.95 -52.49 -0.42 0.83 16 34 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 35 H 0.07 1.30 7.39 -51.93 -0.38 0.92 16 36 H 0.03 0.56 8.01 -51.93 -0.42 0.15 16 37 H 0.33 6.99 8.22 -39.29 -0.32 6.66 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 40 H 0.00 0.08 7.45 -51.93 -0.39 -0.30 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.15 2.09 8.06 -52.48 -0.42 1.67 16 LS Contribution 341.68 15.07 5.15 5.15 Total: -1.00 -28.87 341.68 -9.14 -38.01 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.18 Total: 3.70 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -1.93 Total: -16.06 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.15 Total: -47.03 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.87 -9.14 -38.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170592.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.465 kcal (2) G-P(sol) polarization free energy of solvation -28.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds