Wall clock time and date at job start Mon Mar 30 2020 19:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00206 * 2 1 4 4 H 1.48497 * 109.47302 * 270.00092 * 3 2 1 5 5 H 1.48499 * 109.47031 * 30.00342 * 3 2 1 6 6 H 1.48503 * 109.46944 * 149.99878 * 3 2 1 7 7 C 1.37873 * 119.99429 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00547 * 0.02562 * 7 2 1 9 9 S 1.76207 * 119.99610 * 179.97438 * 7 2 1 10 10 O 1.42104 * 106.39873 * 66.46309 * 9 7 2 11 11 O 1.42093 * 106.40380 * 293.53927 * 9 7 2 12 12 N 1.65606 * 107.21647 * 179.97438 * 9 7 2 13 13 C 1.46928 * 120.62762 * 90.00222 * 12 9 7 14 14 C 1.53193 * 108.77254 * 233.62831 * 13 12 9 15 15 C 1.53037 * 109.31511 * 305.36661 * 14 13 12 16 16 C 1.53043 * 109.53689 * 61.36471 * 15 14 13 17 17 H 1.09000 * 109.49566 * 58.61994 * 16 15 14 18 18 C 1.53006 * 109.49511 * 178.68239 * 16 15 14 19 19 C 1.52999 * 109.46997 * 295.00353 * 18 16 15 20 20 O 1.42905 * 109.46728 * 180.02562 * 19 18 16 21 21 C 1.46921 * 120.63014 * 270.02514 * 12 9 7 22 22 H 0.97005 * 119.99506 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.58413 * 113.84529 * 13 12 9 24 24 H 1.09000 * 109.70501 * 353.48496 * 13 12 9 25 25 H 1.09002 * 109.49254 * 185.41590 * 14 13 12 26 26 H 1.09001 * 109.49796 * 65.31961 * 14 13 12 27 27 H 1.09004 * 109.46071 * 301.34507 * 15 14 13 28 28 H 1.09000 * 109.45104 * 181.38386 * 15 14 13 29 29 H 1.09000 * 109.46866 * 175.00140 * 18 16 15 30 30 H 1.09001 * 109.46611 * 55.00257 * 18 16 15 31 31 H 1.09000 * 109.47486 * 60.00167 * 19 18 16 32 32 H 1.09001 * 109.47362 * 299.99445 * 19 18 16 33 33 H 0.96696 * 114.00036 * 179.97438 * 20 19 18 34 34 H 1.08996 * 109.59106 * 6.58077 * 21 12 9 35 35 H 1.08999 * 109.58813 * 246.15452 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 16 3.7665 -1.1941 -0.0012 10 8 4.1682 -0.6500 1.2486 11 8 4.1673 -0.6495 -1.2509 12 7 4.2567 -2.7760 -0.0011 13 6 4.4777 -3.4913 -1.2653 14 6 3.6556 -4.7838 -1.2507 15 6 4.0074 -5.5935 -0.0006 16 6 3.6560 -4.7834 1.2494 17 1 2.5937 -4.5394 1.2380 18 6 3.9775 -5.6067 2.4984 19 6 3.0699 -6.8374 2.5455 20 8 3.3698 -7.6060 3.7124 21 6 4.4781 -3.4909 1.2632 22 1 -0.4850 0.8401 0.0004 23 1 5.5358 -3.7324 -1.3685 24 1 4.1620 -2.8668 -2.1010 25 1 3.8844 -5.3705 -2.1405 26 1 2.5934 -4.5393 -1.2388 27 1 5.0743 -5.8165 -0.0008 28 1 3.4417 -6.5252 -0.0005 29 1 3.8112 -4.9982 3.3873 30 1 5.0196 -5.9247 2.4655 31 1 3.2363 -7.4459 1.6566 32 1 2.0278 -6.5194 2.5784 33 1 2.8308 -8.4031 3.8077 34 1 4.1610 -2.8651 2.0974 35 1 5.5361 -3.7320 1.3662 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083920121.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:06:42 Heat of formation + Delta-G solvation = -145.898433 kcal Electronic energy + Delta-G solvation = -19043.805542 eV Core-core repulsion = 15975.009045 eV Total energy + Delta-G solvation = -3068.796497 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.69412 -36.80541 -35.70911 -34.43089 -33.42269 -33.00151 -31.44897 -28.27846 -26.37922 -24.45972 -23.10610 -21.39711 -19.89321 -18.47375 -17.60994 -17.25418 -16.72592 -15.47559 -15.24554 -15.18948 -14.56144 -13.83584 -13.77795 -13.70760 -13.33829 -13.16672 -12.99360 -12.80711 -11.92655 -11.76717 -11.63279 -11.35713 -11.33163 -10.88531 -10.80881 -10.63571 -10.57693 -10.49643 -10.27399 -10.12837 -9.91435 -9.74341 -9.20465 -9.08337 -8.23722 -6.80068 -5.33009 2.01649 3.07191 3.17688 3.27164 3.95588 4.05747 4.25526 4.59528 4.82759 4.96038 5.07429 5.17599 5.28504 5.39996 5.43599 5.50340 5.66385 5.70732 5.77606 5.83744 5.91142 5.99506 6.08158 6.13949 6.19294 6.25354 6.32912 6.43568 6.64378 6.73759 7.38755 7.49193 7.52491 8.22447 8.71405 10.32324 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.026895 B = 0.006651 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.844734 B = 4208.631213 C = 4529.766376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.153 3.847 3 Si 0.800 3.200 4 H -0.246 1.246 5 H -0.255 1.255 6 H -0.220 1.220 7 C -1.013 5.013 8 H 0.121 0.879 9 S 2.674 3.326 10 O -1.007 7.007 11 O -1.010 7.010 12 N -1.001 6.001 13 C 0.126 3.874 14 C -0.137 4.137 15 C -0.111 4.111 16 C -0.104 4.104 17 H 0.083 0.917 18 C -0.114 4.114 19 C 0.074 3.926 20 O -0.578 6.578 21 C 0.134 3.866 22 H 0.280 0.720 23 H 0.058 0.942 24 H 0.091 0.909 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.376 0.624 34 H 0.092 0.908 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.421 -12.759 1.207 13.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.066 4.066 3 Si 0.620 3.380 4 H -0.170 1.170 5 H -0.179 1.179 6 H -0.142 1.142 7 C -1.148 5.148 8 H 0.139 0.861 9 S 2.778 3.222 10 O -0.997 6.997 11 O -1.000 7.000 12 N -0.836 5.836 13 C 0.000 4.000 14 C -0.176 4.176 15 C -0.148 4.148 16 C -0.124 4.124 17 H 0.101 0.899 18 C -0.152 4.152 19 C -0.004 4.004 20 O -0.383 6.383 21 C 0.008 3.992 22 H 0.090 0.910 23 H 0.077 0.923 24 H 0.109 0.891 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.222 0.778 34 H 0.110 0.890 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.304 -11.438 1.284 13.123 hybrid contribution -1.028 -0.062 -0.158 1.042 sum 5.276 -11.500 1.126 12.703 Atomic orbital electron populations 1.69996 1.06571 1.28978 1.39791 1.24436 0.94777 0.98784 0.88643 0.87889 0.83653 0.84623 0.81845 1.17019 1.17882 1.14180 1.30544 1.15722 1.02036 1.66479 0.86136 1.01455 0.77295 0.70307 0.73174 1.93452 1.85332 1.75753 1.45172 1.93393 1.85363 1.75849 1.45391 1.57690 1.84503 1.31210 1.10241 1.21249 0.98962 0.93657 0.86174 1.21939 1.01543 0.96527 0.97556 1.21573 1.01112 0.97767 0.94364 1.21521 1.01804 0.95303 0.93747 0.89858 1.21497 0.99891 0.95236 0.98564 1.22292 0.98435 0.92747 0.86880 1.86473 1.65199 1.40769 1.45860 1.21232 0.98816 0.92890 0.86277 0.90957 0.92344 0.89086 0.91372 0.90922 0.92030 0.92153 0.90791 0.91217 0.93479 0.93487 0.77754 0.88973 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.80 13.96 55.43 0.77 -23.03 16 2 C 0.15 4.40 5.47 -17.82 -0.10 4.30 16 3 Si 0.80 20.70 26.54 -169.99 -4.51 16.19 16 4 H -0.25 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.25 -6.05 7.11 56.52 0.40 -5.64 16 6 H -0.22 -5.80 5.61 56.52 0.32 -5.48 16 7 C -1.01 -28.21 10.29 30.60 0.31 -27.90 16 8 H 0.12 3.38 8.06 -52.49 -0.42 2.96 16 9 S 2.67 67.40 4.19 -107.50 -0.45 66.95 16 10 O -1.01 -27.09 14.73 -57.17 -0.84 -27.94 16 11 O -1.01 -27.03 15.55 -57.17 -0.89 -27.92 16 12 N -1.00 -19.62 3.29 -113.52 -0.37 -20.00 16 13 C 0.13 2.06 6.37 -3.71 -0.02 2.04 16 14 C -0.14 -1.86 6.08 -26.61 -0.16 -2.03 16 15 C -0.11 -1.35 4.95 -26.69 -0.13 -1.48 16 16 C -0.10 -1.45 2.34 -90.50 -0.21 -1.66 16 17 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 18 C -0.11 -1.40 5.06 -26.73 -0.14 -1.53 16 19 C 0.07 0.80 6.80 37.16 0.25 1.06 16 20 O -0.58 -6.37 13.66 -35.23 -0.48 -6.85 16 21 C 0.13 2.24 5.66 -3.71 -0.02 2.22 16 22 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.09 1.60 7.13 -51.93 -0.37 1.23 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.63 6.51 -51.93 -0.34 0.30 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.45 6.54 -51.93 -0.34 0.11 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.38 2.35 9.12 45.56 0.42 2.76 16 34 H 0.09 1.66 7.12 -51.93 -0.37 1.29 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 290.83 15.07 4.38 4.38 Total: -1.00 -33.43 290.83 -7.06 -40.49 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -4.45 Total: 2.71 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: -0.22 Total: -24.98 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.40 Total: -43.02 kcal Atomic # 8 Polarization: -60.50 SS G_CDS: -2.21 Total: -62.71 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.51 Total: 16.19 kcal Atomic # 16 Polarization: 67.40 SS G_CDS: -0.45 Total: 66.95 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.43 -7.06 -40.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083920121.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.413 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds