Wall clock time and date at job start Mon Mar 30 2020 19:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46507 * 119.99816 * 2 1 4 4 C 1.50702 * 109.47188 * 274.99864 * 3 2 1 5 5 H 1.07997 * 120.00121 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99787 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00237 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99794 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47149 * 60.00478 * 8 6 4 10 10 H 1.48496 * 109.47238 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47056 * 300.00304 * 8 6 4 12 12 S 1.65594 * 120.00615 * 179.97438 * 2 1 3 13 13 O 1.42103 * 104.27375 * 333.93170 * 12 2 1 14 14 O 1.42101 * 104.28151 * 206.07502 * 12 2 1 15 15 C 1.81399 * 104.45139 * 89.99929 * 12 2 1 16 16 C 1.53175 * 109.54527 * 304.56316 * 15 12 2 17 17 C 1.53094 * 109.16661 * 183.15111 * 16 15 12 18 18 O 1.42898 * 109.41211 * 57.60371 * 17 16 15 19 19 C 1.42897 * 114.10001 * 298.84343 * 18 17 16 20 20 C 1.53089 * 109.41656 * 61.16248 * 19 18 17 21 21 H 1.08995 * 109.47595 * 269.99858 * 1 2 3 22 22 H 1.09001 * 109.47493 * 30.00076 * 1 2 3 23 23 H 1.09002 * 109.46753 * 150.00085 * 1 2 3 24 24 H 1.09007 * 109.47017 * 35.00019 * 3 2 1 25 25 H 1.08995 * 109.47264 * 154.99819 * 3 2 1 26 26 H 0.96998 * 119.99617 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.61268 * 64.77837 * 15 12 2 28 28 H 1.09004 * 109.52259 * 303.05376 * 16 15 12 29 29 H 1.09006 * 109.52330 * 63.24210 * 16 15 12 30 30 H 1.09006 * 109.47665 * 297.62062 * 17 16 15 31 31 H 1.08993 * 109.47955 * 177.58818 * 17 16 15 32 32 H 1.09002 * 109.48425 * 301.17758 * 19 18 17 33 33 H 1.09001 * 109.49443 * 181.15303 * 19 18 17 34 34 H 1.08997 * 109.52675 * 182.48845 * 20 19 18 35 35 H 1.08995 * 109.52428 * 62.29514 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7658 -1.4154 5 1 1.9282 1.1940 -2.2331 6 6 2.9997 2.9510 -1.6663 7 7 3.5024 3.6476 -0.6704 8 14 3.1787 3.5666 -3.4208 9 1 1.8326 3.7716 -4.0133 10 1 3.9211 4.8527 -3.4208 11 1 3.9254 2.5646 -4.2232 12 16 2.2931 -1.4340 0.0006 13 8 1.3970 -2.3558 0.6062 14 8 3.5395 -1.1187 0.6058 15 6 2.5195 -1.8268 -1.7558 16 6 1.1574 -1.8456 -2.4564 17 6 1.3501 -2.2547 -3.9190 18 8 1.9882 -3.5322 -3.9747 19 6 3.2857 -3.5629 -3.3770 20 6 3.1708 -3.2064 -1.8926 21 1 -0.3634 0.0000 1.0276 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 1.6500 2.0044 0.5895 25 1 3.1857 1.1178 0.4343 26 1 3.9658 4.4812 -0.8471 27 1 3.1576 -1.0746 -2.2196 28 1 0.5028 -2.5627 -1.9609 29 1 0.7111 -0.8522 -2.4118 30 1 1.9718 -1.5155 -4.4243 31 1 0.3795 -2.3114 -4.4115 32 1 3.9327 -2.8409 -3.8751 33 1 3.7097 -4.5619 -3.4791 34 1 4.1643 -3.1861 -1.4448 35 1 2.5569 -3.9509 -1.3857 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050199708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:07:21 Heat of formation + Delta-G solvation = -125.048868 kcal Electronic energy + Delta-G solvation = -19470.450127 eV Core-core repulsion = 16402.557735 eV Total energy + Delta-G solvation = -3067.892392 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.16780 -36.58488 -35.65674 -35.31722 -33.75002 -32.56184 -31.11985 -27.84019 -25.41654 -25.09086 -23.72229 -22.25589 -20.45421 -18.28194 -17.04079 -16.82837 -16.37348 -16.01459 -15.72147 -15.23215 -14.82595 -14.58522 -13.95541 -13.87426 -13.45104 -13.17127 -12.42944 -12.34221 -12.16254 -11.86650 -11.73770 -11.53881 -11.40130 -11.21740 -11.15123 -11.00025 -10.85654 -10.74825 -10.52522 -10.24077 -10.08972 -9.86666 -9.32836 -8.56092 -8.02207 -6.17459 -4.25792 0.85995 3.19811 3.24726 3.26735 3.32862 3.86552 4.26086 4.32481 4.43196 4.59761 4.90268 5.00511 5.12684 5.16920 5.21329 5.44236 5.49999 5.55216 5.62286 5.67825 5.73803 5.90114 5.97193 6.05893 6.14953 6.27169 6.51959 7.15748 7.30100 7.37020 7.59333 7.78738 8.07528 8.78611 9.40831 10.90253 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.018074 B = 0.009090 C = 0.007187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.775851 B = 3079.405038 C = 3895.054668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.987 5.987 3 C 0.242 3.758 4 C -0.548 4.548 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 S 2.616 3.384 13 O -0.975 6.975 14 O -0.956 6.956 15 C -0.597 4.597 16 C -0.137 4.137 17 C 0.068 3.932 18 O -0.384 6.384 19 C 0.071 3.929 20 C -0.144 4.144 21 H 0.045 0.955 22 H 0.073 0.927 23 H 0.055 0.945 24 H 0.040 0.960 25 H 0.054 0.946 26 H 0.266 0.734 27 H 0.146 0.854 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.574 -10.343 -4.913 11.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.827 5.827 3 C 0.120 3.880 4 C -0.587 4.587 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 S 2.708 3.292 13 O -0.965 6.965 14 O -0.946 6.946 15 C -0.705 4.705 16 C -0.175 4.175 17 C -0.009 4.009 18 O -0.303 6.303 19 C -0.007 4.007 20 C -0.183 4.183 21 H 0.064 0.936 22 H 0.092 0.908 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.164 0.836 28 H 0.100 0.900 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.285 -10.765 -4.160 11.999 hybrid contribution 0.259 1.065 -1.546 1.895 sum -3.026 -9.701 -5.706 11.654 Atomic orbital electron populations 1.21310 0.80017 1.02051 1.00968 1.57258 1.14003 1.22724 1.88681 1.19254 0.92540 0.78815 0.97368 1.21533 1.37065 1.07156 0.92948 0.92043 1.24962 0.95111 0.96495 0.97239 1.69923 1.36366 1.15134 1.31009 0.86642 0.78324 0.78319 0.84636 1.20110 1.21078 1.20169 1.04835 0.74075 0.73357 0.76959 1.93510 1.65024 1.64242 1.73716 1.93559 1.44702 1.83061 1.73302 1.30667 1.05693 1.05915 1.28218 1.21998 0.93799 1.04155 0.97573 1.22510 0.98037 0.85284 0.95096 1.87886 1.31280 1.31981 1.79149 1.22445 0.85047 1.02088 0.91101 1.22000 1.01844 0.94246 1.00195 0.93594 0.90780 0.92623 0.94213 0.92824 0.92410 0.83610 0.89974 0.88480 0.92595 0.88513 0.92645 0.88533 0.89580 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.72 9.32 59.84 0.56 2.27 16 2 N -0.99 -19.91 2.77 -123.05 -0.34 -20.25 16 3 C 0.24 5.91 5.39 -5.19 -0.03 5.88 16 4 C -0.55 -13.84 9.38 -34.44 -0.32 -14.17 16 5 H 0.06 1.45 7.77 -52.49 -0.41 1.04 16 6 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -24.96 13.29 55.43 0.74 -24.22 16 8 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 16 9 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 S 2.62 50.35 4.83 -107.50 -0.52 49.83 16 13 O -0.97 -19.44 17.08 -57.54 -0.98 -20.42 16 14 O -0.96 -21.84 16.53 -57.54 -0.95 -22.79 16 15 C -0.60 -9.42 2.96 -26.55 -0.08 -9.50 16 16 C -0.14 -1.93 4.32 -26.59 -0.11 -2.04 16 17 C 0.07 0.88 6.84 37.21 0.25 1.13 16 18 O -0.38 -5.28 10.76 -35.23 -0.38 -5.66 16 19 C 0.07 0.86 6.84 37.20 0.25 1.12 16 20 C -0.14 -1.94 5.43 -26.59 -0.14 -2.08 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 23 H 0.06 0.79 6.57 -51.93 -0.34 0.45 16 24 H 0.04 1.01 8.11 -51.93 -0.42 0.59 16 25 H 0.05 1.45 6.81 -51.93 -0.35 1.10 16 26 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.15 2.40 8.14 -51.92 -0.42 1.97 16 28 H 0.08 1.10 8.12 -51.93 -0.42 0.68 16 29 H 0.10 1.37 6.77 -51.93 -0.35 1.01 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 297.73 15.07 4.49 4.49 Total: -1.00 -31.55 297.73 -7.92 -39.47 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -5.23 Total: 0.21 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 0.28 Total: -15.75 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.40 Total: -44.47 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -2.31 Total: -48.88 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 50.35 SS G_CDS: -0.52 Total: 49.83 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.55 -7.92 -39.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050199708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.578 kcal (2) G-P(sol) polarization free energy of solvation -31.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds