Wall clock time and date at job start Mon Mar 30 2020 19:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47153 * 289.75160 * 3 2 1 5 5 C 1.36935 * 119.99783 * 263.91514 * 4 3 2 6 6 H 1.07997 * 119.99927 * 199.37297 * 5 4 3 7 7 C 1.38815 * 120.00241 * 19.38092 * 5 4 3 8 8 N 1.31614 * 120.00155 * 22.28721 * 7 5 4 9 9 Si 1.86801 * 120.00140 * 202.29127 * 7 5 4 10 10 H 1.48497 * 109.47372 * 59.99460 * 9 7 5 11 11 H 1.48503 * 109.47253 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46899 * 299.99733 * 9 7 5 13 13 C 1.46499 * 120.00107 * 83.91776 * 4 3 2 14 14 C 1.50692 * 109.47238 * 89.99872 * 13 4 3 15 15 C 1.33393 * 125.20356 * 90.00056 * 14 13 4 16 16 C 1.38422 * 114.91849 * 179.79347 * 15 14 13 17 17 C 1.33385 * 114.92716 * 0.42992 * 16 15 14 18 18 C 1.50702 * 125.20855 * 179.86038 * 17 16 15 19 19 C 1.53000 * 109.46909 * 89.71919 * 18 17 16 20 20 C 1.52998 * 109.46837 * 180.02562 * 19 18 17 21 21 S 1.75883 * 109.58869 * 359.59520 * 17 16 15 22 22 H 4.40641 * 5.51416 * 179.97438 * 4 1 2 23 23 H 1.08999 * 109.47022 * 169.74829 * 3 2 1 24 24 H 1.08998 * 109.47412 * 49.75552 * 3 2 1 25 25 H 0.97000 * 120.00552 * 180.02562 * 8 7 5 26 26 H 1.09006 * 109.46829 * 329.99834 * 13 4 3 27 27 H 1.08993 * 109.46897 * 210.00037 * 13 4 3 28 28 H 1.07995 * 122.53966 * 0.02562 * 15 14 13 29 29 H 1.08007 * 122.53619 * 180.27336 * 16 15 14 30 30 H 1.08999 * 109.46658 * 329.71718 * 18 17 16 31 31 H 1.08998 * 109.47137 * 209.72175 * 18 17 16 32 32 H 1.08994 * 109.47186 * 60.00386 * 19 18 17 33 33 H 1.09005 * 109.46828 * 299.99916 * 19 18 17 34 34 H 1.09005 * 109.46964 * 299.99369 * 20 19 18 35 35 H 1.09007 * 109.47090 * 180.02562 * 20 19 18 36 36 H 1.09000 * 109.47678 * 60.00042 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.4659 1.3000 5 6 3.4808 0.4401 2.2665 6 1 4.1192 0.1399 3.0843 7 6 3.0113 1.7445 2.1954 8 7 1.9267 2.0167 1.5012 9 14 3.9188 3.1137 3.0849 10 1 5.3081 3.2038 2.5684 11 1 3.2201 4.4033 2.8524 12 1 3.9500 2.8225 4.5408 13 6 3.2526 -1.9017 1.5658 14 6 4.6250 -2.3760 1.1628 15 6 5.6944 -2.4021 1.9598 16 6 6.8500 -2.8839 1.3696 17 6 6.7215 -3.2407 0.0908 18 6 7.8272 -3.7899 -0.7734 19 6 7.8599 -5.3147 -0.6519 20 6 8.9829 -5.8722 -1.5288 21 16 5.0621 -2.9793 -0.4305 22 1 -1.0500 0.0001 0.0002 23 1 3.0088 1.0121 -0.1829 24 1 3.0096 -0.6631 -0.7844 25 1 1.5988 2.9282 1.4512 26 1 2.4988 -2.4407 0.9917 27 1 3.1014 -2.0880 2.6290 28 1 5.6601 -2.0757 2.9887 29 1 7.7856 -2.9625 1.9034 30 1 8.7822 -3.3787 -0.4463 31 1 7.6487 -3.5119 -1.8121 32 1 6.9049 -5.7258 -0.9791 33 1 8.0384 -5.5926 0.3869 34 1 8.8047 -5.5943 -2.5676 35 1 9.0059 -6.9586 -1.4426 36 1 9.9378 -5.4611 -1.2013 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897164607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:06:30 Heat of formation + Delta-G solvation = 96.875720 kcal Electronic energy + Delta-G solvation = -16956.286731 eV Core-core repulsion = 14341.159726 eV Total energy + Delta-G solvation = -2615.127005 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -37.81971 -36.16009 -34.72503 -31.73680 -31.56078 -29.75575 -27.45632 -25.99727 -24.49930 -22.74800 -21.40837 -21.20562 -18.36482 -17.38788 -16.71547 -16.03169 -15.11945 -14.99306 -14.78781 -13.82376 -13.69466 -13.61033 -13.27995 -12.97515 -12.56692 -12.23923 -11.97594 -11.70114 -11.41551 -11.35376 -11.24771 -11.08632 -10.82230 -10.75464 -10.55696 -10.28143 -10.19141 -10.00370 -8.97004 -8.80493 -8.47170 -7.96626 -7.91355 -7.03664 -5.80383 -3.23708 1.52549 2.13268 2.55512 3.27195 3.37762 3.44233 3.46306 4.19019 4.37830 4.53373 4.82089 4.91954 5.01535 5.30788 5.40733 5.49420 5.58169 5.67478 5.68692 5.72612 5.82161 5.87776 5.97428 6.07096 6.15247 6.19314 6.24135 6.53642 6.68682 6.70596 6.90654 7.10066 7.18075 7.40182 7.74817 8.25286 9.07231 9.18483 9.73278 10.19668 11.22764 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.024732 B = 0.005205 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.885194 B = 5378.337353 C = 6120.555810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.097 4.097 3 C 0.268 3.732 4 N -0.574 5.574 5 C -0.268 4.268 6 H 0.074 0.926 7 C 0.008 3.992 8 N -0.885 5.885 9 Si 0.899 3.101 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.283 1.283 13 C 0.207 3.793 14 C -0.148 4.148 15 C -0.147 4.147 16 C -0.127 4.127 17 C -0.199 4.199 18 C -0.042 4.042 19 C -0.119 4.119 20 C -0.152 4.152 21 S 0.071 5.929 22 H 0.191 0.809 23 H 0.092 0.908 24 H 0.036 0.964 25 H 0.255 0.745 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.252 -12.061 -4.620 15.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 C -0.100 4.100 3 C 0.143 3.857 4 N -0.292 5.292 5 C -0.397 4.397 6 H 0.092 0.908 7 C -0.192 4.192 8 N -0.527 5.527 9 Si 0.728 3.272 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.209 1.209 13 C 0.078 3.922 14 C -0.269 4.269 15 C -0.177 4.177 16 C -0.158 4.158 17 C -0.317 4.317 18 C -0.082 4.082 19 C -0.157 4.157 20 C -0.210 4.210 21 S 0.334 5.666 22 H 0.208 0.792 23 H 0.110 0.890 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.151 0.849 29 H 0.145 0.855 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.377 -12.071 -5.966 15.858 hybrid contribution 0.917 1.274 1.937 2.493 sum 9.294 -10.796 -4.029 14.805 Atomic orbital electron populations 1.24173 0.95315 1.06952 1.05140 1.24203 0.95226 0.94813 0.95785 1.17705 0.82918 0.99388 0.85677 1.43984 1.74069 0.99285 1.11897 1.19102 1.24798 0.90402 1.05384 0.90819 1.24907 0.96011 0.98550 0.99683 1.70127 1.19190 1.19162 1.44234 0.86430 0.79696 0.81671 0.79395 1.20996 1.21685 1.20911 1.19356 0.87664 0.85726 0.99459 1.26045 1.03168 1.02960 0.94689 1.19975 0.91758 1.04362 1.01589 1.19995 0.99354 1.02415 0.94053 1.24256 0.98349 1.10507 0.98539 1.20073 0.95137 0.94901 0.98063 1.21549 0.99113 0.94642 1.00413 1.21790 0.98632 1.00627 0.99909 1.84069 1.03611 1.63444 1.15501 0.79191 0.88963 0.94566 0.93418 0.93220 0.91010 0.84891 0.85478 0.90695 0.91292 0.91833 0.91783 0.92753 0.92774 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.81 19.25 29.55 0.57 -6.25 16 2 C -0.10 -2.39 11.50 -37.12 -0.43 -2.82 16 3 C 0.27 6.45 5.41 -6.83 -0.04 6.41 16 4 N -0.57 -13.97 2.47 -177.96 -0.44 -14.41 16 5 C -0.27 -7.14 9.63 -15.06 -0.14 -7.28 16 6 H 0.07 1.93 7.92 -52.49 -0.42 1.51 16 7 C 0.01 0.22 4.82 -17.43 -0.08 0.14 16 8 N -0.88 -25.09 9.61 55.49 0.53 -24.56 16 9 Si 0.90 21.51 29.61 -169.99 -5.03 16.48 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.21 4.27 6.16 -5.20 -0.03 4.24 16 14 C -0.15 -2.75 6.09 -36.01 -0.22 -2.97 16 15 C -0.15 -2.57 10.05 -41.21 -0.41 -2.99 16 16 C -0.13 -1.95 10.05 -41.21 -0.41 -2.37 16 17 C -0.20 -2.93 5.76 -36.00 -0.21 -3.13 16 18 C -0.04 -0.48 5.71 -27.88 -0.16 -0.64 16 19 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 20 C -0.15 -1.23 9.91 37.16 0.37 -0.86 16 21 S 0.07 1.15 23.31 -107.50 -2.51 -1.36 16 22 H 0.19 3.65 7.80 -54.09 -0.42 3.23 16 23 H 0.09 2.42 6.59 -51.93 -0.34 2.08 16 24 H 0.04 0.79 8.12 -51.93 -0.42 0.36 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.05 0.99 8.07 -51.93 -0.42 0.57 16 27 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 28 H 0.13 2.28 8.06 -52.49 -0.42 1.85 16 29 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 324.55 15.07 4.89 4.89 Total: -1.00 -29.05 324.55 -9.29 -38.34 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -5.38 Total: 0.48 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -1.36 Total: -19.85 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.09 Total: -38.98 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.51 Total: -1.36 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.05 -9.29 -38.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897164607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.214 kcal (2) G-P(sol) polarization free energy of solvation -29.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds