Wall clock time and date at job start Mon Mar 30 2020 19:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46931 * 2 1 4 4 N 1.46503 * 109.47400 * 240.00217 * 2 1 3 5 5 C 1.36930 * 120.00237 * 84.99449 * 4 2 1 6 6 H 1.08007 * 120.00025 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99897 * 180.02562 * 5 4 2 8 8 N 1.31615 * 120.00327 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99951 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46941 * 60.00087 * 9 7 5 11 11 H 1.48501 * 109.47332 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47356 * 300.00012 * 9 7 5 13 13 C 1.53000 * 109.47327 * 119.99899 * 2 1 3 14 14 H 1.08997 * 109.47430 * 60.00397 * 13 2 1 15 15 C 1.53000 * 109.46814 * 299.99849 * 13 2 1 16 16 C 1.50703 * 109.46898 * 175.45340 * 15 13 2 17 17 C 1.38234 * 119.99964 * 273.81795 * 16 15 13 18 18 C 1.38240 * 119.99486 * 179.76369 * 17 16 15 19 19 C 1.38229 * 120.00455 * 0.51531 * 18 17 16 20 20 C 1.38243 * 119.99724 * 359.73822 * 19 18 17 21 21 C 1.38228 * 119.99880 * 0.02562 * 20 19 18 22 22 C 1.50697 * 109.47017 * 180.02562 * 13 2 1 23 23 O 1.20831 * 120.00301 * 82.95534 * 22 13 2 24 24 O 1.34232 * 120.00145 * 262.95161 * 22 13 2 25 25 H 1.09001 * 109.47383 * 299.99679 * 1 2 3 26 26 H 1.09000 * 109.47311 * 60.00568 * 1 2 3 27 27 H 1.09010 * 109.46824 * 180.02562 * 1 2 3 28 28 H 0.97004 * 119.99668 * 264.99935 * 4 2 1 29 29 H 0.96998 * 120.00078 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.47955 * 295.45563 * 15 13 2 31 31 H 1.09003 * 109.47126 * 55.45810 * 15 13 2 32 32 H 1.07998 * 120.00475 * 359.97438 * 17 16 15 33 33 H 1.08004 * 119.99304 * 180.22891 * 18 17 16 34 34 H 1.08002 * 120.00590 * 179.72146 * 19 18 17 35 35 H 1.07997 * 119.99632 * 179.97438 * 20 19 18 36 36 H 1.08006 * 119.99894 * 179.97438 * 21 20 19 37 37 H 0.96698 * 117.00270 * 180.02562 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8925 1.0405 -2.4242 7 6 2.6114 -0.6620 -3.5092 8 7 2.9245 -1.9390 -3.4501 9 14 2.7890 0.2697 -5.1186 10 1 3.7443 1.3922 -4.9378 11 1 3.2982 -0.6487 -6.1686 12 1 1.4665 0.8063 -5.5285 13 6 2.0400 -0.7212 1.2492 14 1 1.6768 -1.7489 1.2493 15 6 1.5300 0.0001 2.4984 16 6 1.9383 -0.7723 3.7263 17 6 1.1446 -1.8052 4.1888 18 6 1.5217 -2.5169 5.3124 19 6 2.6870 -2.1888 5.9795 20 6 3.4781 -1.1524 5.5200 21 6 3.1036 -0.4439 4.3938 22 6 3.5470 -0.7206 1.2495 23 8 4.1508 0.2431 1.6578 24 8 4.2187 -1.7907 0.7961 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 2.2491 -1.6318 -1.1526 29 1 3.2479 -2.3962 -4.2421 30 1 1.9582 1.0016 2.5401 31 1 0.4430 0.0711 2.4587 32 1 0.2316 -2.0584 3.6705 33 1 0.9034 -3.3263 5.6715 34 1 2.9793 -2.7418 6.8599 35 1 4.3884 -0.8958 6.0416 36 1 3.7214 0.3660 4.0350 37 1 5.1843 -1.7439 0.8164 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609775565.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:08:32 Heat of formation + Delta-G solvation = -68.573397 kcal Electronic energy + Delta-G solvation = -19951.555335 eV Core-core repulsion = 16886.501047 eV Total energy + Delta-G solvation = -3065.054288 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.18740 -38.91639 -36.44244 -35.44743 -33.56526 -31.75978 -30.84396 -29.35973 -27.82411 -25.45412 -23.56961 -22.53911 -21.88509 -20.80562 -19.36287 -17.80711 -17.12100 -16.79642 -16.12278 -15.42032 -15.09454 -14.79761 -14.60499 -13.75545 -13.58464 -13.37315 -13.02647 -12.83937 -12.77543 -12.43247 -12.18297 -11.81248 -11.41505 -11.25789 -11.08298 -10.93299 -10.81496 -10.78856 -10.64767 -10.30530 -10.04477 -9.85610 -9.68353 -8.93962 -8.88515 -8.65598 -7.00785 -5.76371 -3.07007 1.36457 1.43692 2.81838 3.44093 3.48644 3.49313 3.61222 3.80515 4.55491 4.77865 4.90442 4.99965 5.14042 5.16829 5.37854 5.47660 5.51168 5.55533 5.66539 5.80252 5.86264 5.92564 5.99226 6.10173 6.14674 6.18728 6.32364 6.48620 6.52430 6.53929 6.71807 6.74201 6.98052 7.03390 7.10377 7.69014 8.40384 8.48999 9.52555 10.06239 10.42419 11.45375 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.033988 B = 0.004916 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.627929 B = 5693.977948 C = 5950.348096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.182 3.818 3 H 0.056 0.944 4 N -0.724 5.724 5 C -0.243 4.243 6 H 0.070 0.930 7 C -0.009 4.009 8 N -0.929 5.929 9 Si 0.906 3.094 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.285 1.285 13 C -0.080 4.080 14 H 0.097 0.903 15 C -0.072 4.072 16 C -0.085 4.085 17 C -0.114 4.114 18 C -0.123 4.123 19 C -0.127 4.127 20 C -0.123 4.123 21 C -0.111 4.111 22 C 0.505 3.495 23 O -0.531 6.531 24 O -0.504 6.504 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.388 0.612 29 H 0.256 0.744 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.355 -0.215 17.081 17.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.072 3.928 3 H 0.074 0.926 4 N -0.366 5.366 5 C -0.374 4.374 6 H 0.088 0.912 7 C -0.205 4.205 8 N -0.576 5.576 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.212 1.212 13 C -0.100 4.100 14 H 0.116 0.884 15 C -0.110 4.110 16 C -0.085 4.085 17 C -0.132 4.132 18 C -0.141 4.141 19 C -0.145 4.145 20 C -0.141 4.141 21 C -0.129 4.129 22 C 0.349 3.651 23 O -0.421 6.421 24 O -0.313 6.313 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.223 0.777 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.147 0.853 37 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -2.601 0.125 17.011 17.209 hybrid contribution 0.905 0.081 -0.963 1.324 sum -1.697 0.206 16.048 16.138 Atomic orbital electron populations 1.22495 0.97990 1.01388 1.00598 1.20188 0.92709 0.95481 0.84448 0.92580 1.42468 1.78161 1.10932 1.05071 1.19156 1.37214 0.93868 0.87171 0.91223 1.24730 1.01876 0.95949 0.97993 1.69663 1.50423 1.08589 1.28941 0.86297 0.77810 0.78645 0.83586 1.21292 1.21683 1.21218 1.21427 0.87734 1.03285 0.97568 0.88433 1.20691 1.02066 0.98998 0.89208 1.19997 0.95132 0.96634 0.96703 1.21103 0.99885 0.95604 0.96617 1.21109 0.97074 0.99804 0.96102 1.21117 0.95413 0.97912 1.00107 1.21151 0.99672 0.96358 0.96937 1.21323 0.96284 1.00167 0.95090 1.23134 0.91441 0.79291 0.71273 1.90596 1.70734 1.35242 1.45527 1.84604 1.25862 1.43253 1.77593 0.93790 0.92124 0.93053 0.77725 0.93458 0.89494 0.88871 0.85862 0.86246 0.86464 0.86366 0.85332 0.74125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.15 37.16 0.34 -2.42 16 2 C 0.18 3.55 2.46 -67.93 -0.17 3.38 16 3 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 4 N -0.72 -17.86 4.70 -53.42 -0.25 -18.11 16 5 C -0.24 -6.70 9.93 -15.06 -0.15 -6.85 16 6 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 7 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 8 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 9 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 C -0.08 -1.34 1.92 -91.77 -0.18 -1.51 16 14 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 15 C -0.07 -0.99 4.39 -27.88 -0.12 -1.11 16 16 C -0.08 -1.14 4.76 -104.62 -0.50 -1.63 16 17 C -0.11 -1.37 9.72 -39.58 -0.38 -1.76 16 18 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 19 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 20 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 21 C -0.11 -1.51 8.76 -39.59 -0.35 -1.85 16 22 C 0.51 9.42 6.02 36.00 0.22 9.64 16 23 O -0.53 -10.54 15.45 -18.75 -0.29 -10.83 16 24 O -0.50 -9.09 13.42 -39.26 -0.53 -9.62 16 25 H 0.04 0.59 6.33 -51.93 -0.33 0.26 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 28 H 0.39 10.25 7.80 -40.82 -0.32 9.93 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.09 1.24 7.62 -51.93 -0.40 0.85 16 31 H 0.09 1.09 6.16 -51.93 -0.32 0.77 16 32 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.13 1.85 7.01 -52.48 -0.37 1.48 16 37 H 0.40 5.59 9.10 45.56 0.41 6.01 16 LS Contribution 315.15 15.07 4.75 4.75 Total: -1.00 -32.28 315.15 -7.44 -39.72 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -4.24 Total: 13.73 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -2.58 Total: -9.88 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.47 Total: -45.22 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.82 Total: -20.45 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.28 -7.44 -39.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609775565.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.856 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds