Wall clock time and date at job start Mon Mar 30 2020 19:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48504 * 109.47025 * 270.00008 * 3 2 1 5 5 H 1.48493 * 109.47332 * 30.00302 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00428 * 175.13615 * 7 2 1 9 9 C 1.50704 * 119.99726 * 355.41881 * 7 2 1 10 10 C 1.53000 * 115.54588 * 274.92551 * 9 7 2 11 11 N 1.46498 * 109.47299 * 294.81766 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79547 * 11 10 9 13 13 O 1.21285 * 120.00147 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99855 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.46909 * 180.02562 * 14 12 11 16 16 N 1.46506 * 109.47090 * 180.02562 * 15 14 12 17 17 C 1.34938 * 126.04040 * 124.99913 * 16 15 14 18 18 C 1.35320 * 107.74854 * 179.97438 * 17 16 15 19 19 C 1.39874 * 107.91688 * 359.97438 * 18 17 16 20 20 N 1.30841 * 108.20150 * 359.74445 * 19 18 17 21 21 C 1.53001 * 117.50018 * 129.26227 * 9 7 2 22 22 C 1.52994 * 117.50192 * 60.59946 * 9 7 2 23 23 H 0.97004 * 120.00173 * 4.99858 * 1 2 3 24 24 H 1.09001 * 109.47069 * 54.82062 * 10 9 7 25 25 H 1.09005 * 109.47200 * 174.81939 * 10 9 7 26 26 H 0.96999 * 120.00541 * 4.80062 * 11 10 9 27 27 H 1.09003 * 109.47069 * 299.99723 * 14 12 11 28 28 H 1.09000 * 109.47431 * 60.00514 * 14 12 11 29 29 H 1.09001 * 109.47343 * 299.99642 * 15 14 12 30 30 H 1.08995 * 109.47684 * 60.00162 * 15 14 12 31 31 H 1.08007 * 126.12989 * 359.97438 * 17 16 15 32 32 H 1.08002 * 126.04068 * 179.97438 * 18 17 16 33 33 H 1.08000 * 125.89238 * 179.97438 * 19 18 17 34 34 H 1.09003 * 117.49648 * 359.97438 * 21 9 7 35 35 H 1.08991 * 117.50066 * 145.01997 * 21 9 7 36 36 H 1.08996 * 117.49909 * 214.98045 * 22 9 7 37 37 H 1.09006 * 117.50020 * 359.97109 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1958 -0.0798 9 6 1.2546 -2.4971 0.1031 10 6 0.9189 -2.9539 1.5242 11 7 2.1581 -3.2482 2.2481 12 6 2.1055 -3.7618 3.4931 13 8 1.0323 -3.9808 4.0139 14 6 3.3803 -4.0639 4.2380 15 6 3.0422 -4.6345 5.6167 16 7 4.2814 -4.9277 6.3412 17 6 4.6153 -4.4637 7.5635 18 6 5.8332 -4.9637 7.8760 19 6 6.2580 -5.7611 6.8082 20 7 5.3260 -5.7449 5.8901 21 6 1.5730 -3.5796 -0.9302 22 6 0.2452 -2.8210 -1.0000 23 1 -0.4850 0.8369 -0.0732 24 1 0.3751 -2.1632 2.0411 25 1 0.3015 -3.8512 1.4812 26 1 3.0164 -3.0733 1.8316 27 1 3.9649 -4.7929 3.6769 28 1 3.9584 -3.1474 4.3556 29 1 2.4574 -3.9059 6.1781 30 1 2.4643 -5.5511 5.4990 31 1 4.0175 -3.8102 8.1817 32 1 6.3806 -4.7795 8.7887 33 1 7.1922 -6.3002 6.7531 34 1 2.3246 -3.3491 -1.6853 35 1 1.5428 -4.6172 -0.5978 36 1 -0.6578 -3.3599 -0.7135 37 1 0.1232 -2.0914 -1.8007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404076797.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:09:23 Heat of formation + Delta-G solvation = 57.923274 kcal Electronic energy + Delta-G solvation = -19028.381400 eV Core-core repulsion = 16001.105170 eV Total energy + Delta-G solvation = -3027.276230 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.19203 -39.24360 -36.78392 -34.24962 -33.39733 -32.00952 -30.57746 -29.63455 -26.59984 -25.40556 -23.87999 -21.23606 -21.16896 -20.67887 -19.79396 -19.25573 -17.52624 -16.61065 -15.92525 -15.76218 -15.24193 -14.80289 -14.54567 -14.30209 -13.88508 -13.78305 -13.13704 -12.93259 -12.82263 -12.57363 -12.26306 -11.88126 -11.62305 -11.34680 -11.04056 -10.98749 -10.69853 -10.57537 -10.27875 -9.71709 -9.55145 -9.39481 -9.09927 -8.69155 -8.54676 -8.34205 -8.16172 -6.12254 -4.22443 1.82357 2.40460 2.76380 3.04513 3.21897 3.30208 3.31496 3.76622 4.30800 4.48831 4.74246 4.79333 4.95598 5.14168 5.17199 5.29880 5.37638 5.48384 5.61438 5.73254 5.80468 5.91211 5.98358 6.29161 6.42030 6.50460 6.55945 6.66837 6.80245 6.91765 7.07863 7.17442 7.33825 7.48726 7.62680 7.76294 8.16061 8.28773 8.71508 8.79540 9.45043 10.94774 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.023499 B = 0.004059 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.253752 B = 6896.949000 C = 7444.904640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.023 3.977 10 C 0.162 3.838 11 N -0.699 5.699 12 C 0.509 3.491 13 O -0.562 6.562 14 C -0.153 4.153 15 C 0.150 3.850 16 N -0.369 5.369 17 C 0.055 3.945 18 C -0.281 4.281 19 C 0.040 3.960 20 N -0.296 5.296 21 C -0.211 4.211 22 C -0.142 4.142 23 H 0.262 0.738 24 H 0.068 0.932 25 H 0.041 0.959 26 H 0.403 0.597 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.173 0.827 32 H 0.145 0.855 33 H 0.181 0.819 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.718 -7.398 11.246 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.022 3.978 10 C 0.039 3.961 11 N -0.347 5.347 12 C 0.293 3.707 13 O -0.442 6.442 14 C -0.193 4.193 15 C 0.029 3.971 16 N -0.151 5.151 17 C -0.091 4.091 18 C -0.311 4.311 19 C -0.146 4.146 20 N -0.118 5.118 21 C -0.248 4.248 22 C -0.180 4.180 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.059 0.941 26 H 0.237 0.763 27 H 0.122 0.878 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.190 0.810 32 H 0.163 0.837 33 H 0.198 0.802 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.265 -7.793 10.427 14.908 hybrid contribution 1.062 1.446 0.531 1.871 sum 8.328 -6.348 10.958 15.156 Atomic orbital electron populations 1.69989 1.05888 1.26921 1.48225 1.24990 0.94824 0.98986 0.94270 0.86622 0.79908 0.83502 0.78172 1.20634 1.21155 1.19810 1.20352 0.92638 0.88573 1.52328 0.92196 1.19042 0.99483 0.93366 0.85892 1.21032 0.83991 0.97988 0.93049 1.45992 1.11562 1.62173 1.14995 1.20200 0.90143 0.77993 0.82325 1.90676 1.30984 1.54517 1.68044 1.21860 0.97759 1.03799 0.95917 1.21471 0.80879 1.02623 0.92124 1.48875 1.15996 1.36516 1.13737 1.22627 0.97726 1.00372 0.88404 1.21499 0.98100 1.08495 1.02964 1.23880 0.98860 0.99637 0.92211 1.77352 0.97146 1.13741 1.23531 1.23022 1.00733 0.95569 1.05481 1.22468 0.90787 1.01303 1.03429 0.92835 0.91355 0.94059 0.76293 0.87775 0.88551 0.87708 0.88818 0.80977 0.83720 0.80222 0.90356 0.91707 0.91812 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.88 12.65 55.43 0.70 -23.18 16 2 C 0.07 1.92 5.43 -17.82 -0.10 1.82 16 3 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.50 -12.67 8.59 -34.44 -0.30 -12.97 16 8 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 9 C 0.02 0.53 1.47 -155.66 -0.23 0.30 16 10 C 0.16 3.57 5.50 -4.04 -0.02 3.55 16 11 N -0.70 -12.98 5.48 -60.29 -0.33 -13.31 16 12 C 0.51 8.77 7.83 -10.98 -0.09 8.69 16 13 O -0.56 -11.43 15.98 5.55 0.09 -11.34 16 14 C -0.15 -2.00 5.89 -27.88 -0.16 -2.16 16 15 C 0.15 1.83 5.80 -4.04 -0.02 1.80 16 16 N -0.37 -4.53 3.68 -61.36 -0.23 -4.75 16 17 C 0.06 0.56 11.45 -17.23 -0.20 0.37 16 18 C -0.28 -2.74 10.80 -40.01 -0.43 -3.17 16 19 C 0.04 0.43 12.03 -17.36 -0.21 0.22 16 20 N -0.30 -3.96 12.42 30.63 0.38 -3.58 16 21 C -0.21 -4.35 9.96 -26.69 -0.27 -4.61 16 22 C -0.14 -3.21 9.14 -26.70 -0.24 -3.46 16 23 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 24 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 25 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 26 H 0.40 6.91 8.33 -40.82 -0.34 6.57 16 27 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 28 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.10 1.16 8.03 -51.93 -0.42 0.74 16 30 H 0.09 1.19 8.10 -51.93 -0.42 0.77 16 31 H 0.17 1.20 8.06 -52.48 -0.42 0.77 16 32 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.09 2.12 8.14 -51.93 -0.42 1.69 16 LS Contribution 324.82 15.07 4.89 4.89 Total: -1.00 -30.24 324.82 -7.15 -37.39 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -5.37 Total: 8.26 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -2.27 Total: -9.62 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.53 Total: -44.81 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.24 -7.15 -37.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404076797.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.309 kcal (2) G-P(sol) polarization free energy of solvation -30.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds