Wall clock time and date at job start Mon Mar 30 2020 19:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48504 * 109.47025 * 270.00008 * 3 2 1 5 5 H 1.48493 * 109.47332 * 30.00302 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00428 * 175.13615 * 7 2 1 9 9 C 1.50704 * 119.99726 * 355.41881 * 7 2 1 10 10 C 1.53000 * 115.54588 * 274.92551 * 9 7 2 11 11 N 1.46498 * 109.47299 * 294.81766 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79547 * 11 10 9 13 13 O 1.21285 * 120.00147 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99855 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.46909 * 180.02562 * 14 12 11 16 16 N 1.46506 * 109.47090 * 180.02562 * 15 14 12 17 17 C 1.34938 * 126.04040 * 124.99913 * 16 15 14 18 18 C 1.35320 * 107.74854 * 179.97438 * 17 16 15 19 19 C 1.39874 * 107.91688 * 359.97438 * 18 17 16 20 20 N 1.30841 * 108.20150 * 359.74445 * 19 18 17 21 21 C 1.53001 * 117.50018 * 129.26227 * 9 7 2 22 22 C 1.52994 * 117.50192 * 60.59946 * 9 7 2 23 23 H 0.97004 * 120.00173 * 4.99858 * 1 2 3 24 24 H 1.09001 * 109.47069 * 54.82062 * 10 9 7 25 25 H 1.09005 * 109.47200 * 174.81939 * 10 9 7 26 26 H 0.96999 * 120.00541 * 4.80062 * 11 10 9 27 27 H 1.09003 * 109.47069 * 299.99723 * 14 12 11 28 28 H 1.09000 * 109.47431 * 60.00514 * 14 12 11 29 29 H 1.09001 * 109.47343 * 299.99642 * 15 14 12 30 30 H 1.08995 * 109.47684 * 60.00162 * 15 14 12 31 31 H 1.08007 * 126.12989 * 359.97438 * 17 16 15 32 32 H 1.08002 * 126.04068 * 179.97438 * 18 17 16 33 33 H 1.08000 * 125.89238 * 179.97438 * 19 18 17 34 34 H 1.09003 * 117.49648 * 359.97438 * 21 9 7 35 35 H 1.08991 * 117.50066 * 145.01997 * 21 9 7 36 36 H 1.08996 * 117.49909 * 214.98045 * 22 9 7 37 37 H 1.09006 * 117.50020 * 359.97109 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1958 -0.0798 9 6 1.2546 -2.4971 0.1031 10 6 0.9189 -2.9539 1.5242 11 7 2.1581 -3.2482 2.2481 12 6 2.1055 -3.7618 3.4931 13 8 1.0323 -3.9808 4.0139 14 6 3.3803 -4.0639 4.2380 15 6 3.0422 -4.6345 5.6167 16 7 4.2814 -4.9277 6.3412 17 6 4.6153 -4.4637 7.5635 18 6 5.8332 -4.9637 7.8760 19 6 6.2580 -5.7611 6.8082 20 7 5.3260 -5.7449 5.8901 21 6 1.5730 -3.5796 -0.9302 22 6 0.2452 -2.8210 -1.0000 23 1 -0.4850 0.8369 -0.0732 24 1 0.3751 -2.1632 2.0411 25 1 0.3015 -3.8512 1.4812 26 1 3.0164 -3.0733 1.8316 27 1 3.9649 -4.7929 3.6769 28 1 3.9584 -3.1474 4.3556 29 1 2.4574 -3.9059 6.1781 30 1 2.4643 -5.5511 5.4990 31 1 4.0175 -3.8102 8.1817 32 1 6.3806 -4.7795 8.7887 33 1 7.1922 -6.3002 6.7531 34 1 2.3246 -3.3491 -1.6853 35 1 1.5428 -4.6172 -0.5978 36 1 -0.6578 -3.3599 -0.7135 37 1 0.1232 -2.0914 -1.8007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404076797.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:09:22 Heat of formation + Delta-G solvation = 39.084778 kcal Electronic energy + Delta-G solvation = -19029.198298 eV Core-core repulsion = 16001.105170 eV Total energy + Delta-G solvation = -3028.093128 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.00552 -40.70766 -38.52595 -35.24800 -34.99042 -33.96560 -31.50209 -30.54761 -28.21984 -27.20970 -25.04789 -22.95606 -21.97126 -21.64080 -21.36426 -20.84506 -18.61818 -18.18318 -17.30516 -16.96529 -16.69390 -16.60575 -15.93879 -15.37210 -15.17618 -15.05268 -14.49101 -14.26436 -13.96649 -13.65449 -13.51735 -13.46159 -13.17707 -12.94865 -12.82633 -12.39419 -12.36552 -12.03930 -11.53143 -11.43142 -11.02277 -10.96084 -10.45322 -10.38196 -10.06943 -9.87104 -9.48299 -8.10328 -6.24831 1.02387 1.41619 1.44705 1.52362 1.53633 1.64338 2.01561 2.37586 2.43634 3.17578 3.47947 3.57431 3.74073 3.93166 4.12487 4.20486 4.24881 4.37059 4.52014 4.56266 4.64119 4.71906 4.73644 4.87726 4.94822 4.98289 5.02292 5.20648 5.27612 5.53976 5.56584 5.68419 5.77242 5.80900 6.14269 6.35538 6.69081 6.82337 6.83253 7.29220 7.45268 8.96477 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.023499 B = 0.004059 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.253752 B = 6896.949000 C = 7444.904640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 0.949 3.051 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.003 3.997 10 C 0.178 3.822 11 N -0.699 5.699 12 C 0.511 3.489 13 O -0.593 6.593 14 C -0.134 4.134 15 C 0.155 3.845 16 N -0.382 5.382 17 C 0.050 3.950 18 C -0.284 4.284 19 C 0.037 3.963 20 N -0.339 5.339 21 C -0.179 4.179 22 C -0.154 4.154 23 H 0.259 0.741 24 H 0.029 0.971 25 H 0.039 0.961 26 H 0.411 0.589 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.083 0.917 31 H 0.201 0.799 32 H 0.170 0.830 33 H 0.206 0.794 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.755 -7.701 12.296 18.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.175 4.175 3 Si 0.775 3.225 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.188 1.188 7 C -0.543 4.543 8 H 0.081 0.919 9 C 0.002 3.998 10 C 0.054 3.946 11 N -0.347 5.347 12 C 0.298 3.702 13 O -0.475 6.475 14 C -0.175 4.175 15 C 0.033 3.967 16 N -0.165 5.165 17 C -0.096 4.096 18 C -0.313 4.313 19 C -0.149 4.149 20 N -0.161 5.161 21 C -0.216 4.216 22 C -0.192 4.192 23 H 0.068 0.932 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.247 0.753 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.101 0.899 31 H 0.218 0.782 32 H 0.187 0.813 33 H 0.223 0.777 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.346 -8.107 11.482 16.879 hybrid contribution 0.459 1.490 0.251 1.579 sum 9.806 -6.618 11.733 16.662 Atomic orbital electron populations 1.70111 1.07224 1.27327 1.49784 1.25690 0.95469 1.02027 0.94357 0.85694 0.78909 0.79801 0.78085 1.20358 1.21731 1.18835 1.20666 0.92944 0.89548 1.51184 0.91867 1.19086 1.00134 0.93916 0.86653 1.20585 0.85101 0.96454 0.92445 1.45896 1.10731 1.62580 1.15532 1.20854 0.91155 0.76569 0.81654 1.90662 1.32732 1.55571 1.68571 1.21726 0.95205 1.04579 0.95982 1.21349 0.81223 1.02315 0.91790 1.48861 1.15869 1.37232 1.14527 1.23237 0.98260 1.00255 0.87840 1.21883 0.98087 1.07815 1.03549 1.24452 0.99194 0.99284 0.91921 1.77306 0.98248 1.15306 1.25228 1.23002 0.98944 0.95946 1.03728 1.22387 0.92096 1.01774 1.02935 0.93188 0.95212 0.94224 0.75312 0.87067 0.87221 0.86734 0.89878 0.78178 0.81255 0.77723 0.89764 0.89435 0.91237 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.46 12.65 21.45 0.27 -50.19 16 2 C 0.03 1.32 5.43 84.65 0.46 1.78 16 3 Si 0.95 41.50 29.54 68.60 2.03 43.53 16 4 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 7 C -0.51 -25.36 8.59 25.60 0.22 -25.14 16 8 H 0.06 3.06 7.82 -2.91 -0.02 3.04 16 9 C 0.00 0.13 1.47 -52.93 -0.08 0.05 16 10 C 0.18 7.91 5.50 86.38 0.48 8.38 16 11 N -0.70 -25.45 5.48 -463.05 -2.54 -27.99 16 12 C 0.51 17.25 7.83 87.66 0.69 17.93 16 13 O -0.59 -24.11 15.98 -3.04 -0.05 -24.16 16 14 C -0.13 -3.32 5.89 29.85 0.18 -3.15 16 15 C 0.15 3.58 5.80 86.38 0.50 4.08 16 16 N -0.38 -8.73 3.68 -348.06 -1.28 -10.01 16 17 C 0.05 0.89 11.45 83.54 0.96 1.85 16 18 C -0.28 -4.77 10.80 21.99 0.24 -4.53 16 19 C 0.04 0.72 12.03 85.24 1.03 1.74 16 20 N -0.34 -8.55 12.42 -57.02 -0.71 -9.26 16 21 C -0.18 -7.09 9.96 30.62 0.30 -6.79 16 22 C -0.15 -6.98 9.14 30.62 0.28 -6.70 16 23 H 0.26 13.92 8.32 -92.71 -0.77 13.15 16 24 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.04 1.74 8.09 -2.38 -0.02 1.72 16 26 H 0.41 13.56 8.33 -92.71 -0.77 12.79 16 27 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.11 2.38 8.03 -2.39 -0.02 2.36 16 30 H 0.08 2.07 8.10 -2.39 -0.02 2.06 16 31 H 0.20 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 33 H 0.21 2.58 8.06 -2.91 -0.02 2.56 16 34 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 35 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 37 H 0.06 3.19 8.14 -2.38 -0.02 3.17 16 Total: -1.00 -64.88 324.82 3.26 -61.62 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: 0.29 Total: 26.96 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: 5.24 Total: -10.49 kcal Atomic # 7 Polarization: -93.20 SS G_CDS: -4.25 Total: -97.46 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.05 Total: -24.16 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -64.88 3.26 -61.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404076797.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.704 kcal (2) G-P(sol) polarization free energy of solvation -64.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds