Wall clock time and date at job start Mon Mar 30 2020 19:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38224 * 119.62022 * 2 1 4 4 C 1.38630 * 119.16347 * 179.97438 * 3 2 1 5 5 C 1.38675 * 118.41860 * 0.25530 * 4 3 2 6 6 C 1.50699 * 120.41772 * 179.74920 * 5 4 3 7 7 C 1.50705 * 109.47057 * 89.99771 * 6 5 4 8 8 O 1.21282 * 119.99671 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99710 * 179.97438 * 7 6 5 10 10 C 1.46507 * 119.99647 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.46844 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.46974 * 179.97438 * 11 10 9 13 13 C 1.36936 * 120.00258 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99652 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00183 * 180.02562 * 13 12 11 16 16 N 1.31620 * 119.99948 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99905 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47101 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47144 * 119.99869 * 17 15 13 20 20 H 1.48500 * 109.46752 * 239.99371 * 17 15 13 21 21 C 1.38181 * 119.15910 * 359.47628 * 5 4 3 22 22 N 1.31857 * 119.61823 * 179.97438 * 2 1 3 23 23 H 1.09007 * 109.46662 * 89.99795 * 1 2 3 24 24 H 1.08999 * 109.47158 * 209.99996 * 1 2 3 25 25 H 1.08991 * 109.47069 * 330.00334 * 1 2 3 26 26 H 1.07997 * 120.41892 * 0.02562 * 3 2 1 27 27 H 1.08002 * 120.78834 * 179.97438 * 4 3 2 28 28 H 1.09002 * 109.46977 * 209.99446 * 6 5 4 29 29 H 1.08994 * 109.47024 * 329.99906 * 6 5 4 30 30 H 0.96996 * 120.00599 * 0.02562 * 9 7 6 31 31 H 1.08997 * 109.47055 * 300.00526 * 10 9 7 32 32 H 1.08993 * 109.46932 * 60.00058 * 10 9 7 33 33 H 1.08997 * 109.47563 * 300.00018 * 11 10 9 34 34 H 1.09003 * 109.47077 * 60.00575 * 11 10 9 35 35 H 0.97000 * 120.00233 * 0.02562 * 12 11 10 36 36 H 0.97005 * 119.99822 * 180.02562 * 16 15 13 37 37 H 1.08008 * 119.61503 * 180.25015 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 0.0005 5 6 4.2267 -0.0343 -0.0044 6 6 5.7323 -0.0989 -0.0097 7 6 6.2390 -0.1234 1.4094 8 8 5.4547 -0.0921 2.3339 9 7 7.5637 -0.1812 1.6509 10 6 8.0563 -0.2045 3.0305 11 6 9.5849 -0.2702 3.0250 12 7 10.0776 -0.2929 4.4045 13 6 11.4235 -0.3505 4.6500 14 1 12.1218 -0.3796 3.8266 15 6 11.8903 -0.3725 5.9571 16 7 11.0392 -0.3376 6.9605 17 14 13.7264 -0.4518 6.2920 18 1 14.4637 -0.4820 5.0033 19 1 14.1394 0.7429 7.0712 20 1 14.0354 -1.6798 7.0676 21 6 3.4766 -1.1948 0.0014 22 7 2.1587 -1.1463 0.0005 23 1 -0.3633 0.0000 -1.0278 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5137 26 1 1.6508 2.1373 0.0004 27 1 4.1366 2.1139 0.0001 28 1 6.0553 -1.0025 -0.5265 29 1 6.1316 0.7758 -0.5230 30 1 8.1909 -0.2067 0.9115 31 1 7.7336 0.6995 3.5468 32 1 7.6566 -1.0787 3.5443 33 1 9.9080 -1.1740 2.5086 34 1 9.9843 0.6043 2.5114 35 1 9.4504 -0.2671 5.1440 36 1 11.3655 -0.3526 7.8739 37 1 3.9754 -2.1528 0.0018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151160708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:11:37 Heat of formation + Delta-G solvation = -0.598543 kcal Electronic energy + Delta-G solvation = -18348.001207 eV Core-core repulsion = 15318.187281 eV Total energy + Delta-G solvation = -3029.813926 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.63246 -39.33497 -35.76905 -34.21352 -33.85564 -32.45851 -31.35604 -30.18001 -27.84798 -26.02108 -23.80872 -23.49453 -21.92692 -21.45234 -20.28023 -17.41754 -16.97182 -16.90556 -16.46366 -15.76782 -15.37068 -15.00596 -14.59434 -14.53378 -14.00921 -13.66808 -13.44804 -13.24114 -13.12743 -12.88983 -12.55506 -12.50795 -12.32221 -11.76320 -11.41424 -11.13641 -10.84484 -10.83501 -10.12025 -10.04797 -9.87825 -9.73467 -9.60691 -9.01703 -8.92905 -8.85785 -7.01739 -5.81733 -3.12662 0.90002 1.14015 2.67551 3.19639 3.40625 3.45789 3.48460 3.68084 4.10179 4.44698 4.50746 4.56121 4.70511 4.78691 4.89079 5.06090 5.17890 5.31453 5.33085 5.38993 5.47999 5.51613 5.57962 5.75301 5.77756 5.93521 5.93817 6.06827 6.12647 6.45368 6.53982 6.67595 6.71481 7.57553 7.64194 7.83654 8.28614 8.35934 9.47106 10.01848 10.36352 11.40900 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.058937 B = 0.002667 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.967498 B =10494.646364 C =10660.384112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.121 3.879 3 C -0.172 4.172 4 C -0.058 4.058 5 C -0.121 4.121 6 C -0.098 4.098 7 C 0.509 3.491 8 O -0.534 6.534 9 N -0.723 5.723 10 C 0.111 3.889 11 C 0.145 3.855 12 N -0.730 5.730 13 C -0.244 4.244 14 H 0.072 0.928 15 C -0.013 4.013 16 N -0.930 5.930 17 Si 0.910 3.090 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.290 1.290 21 C 0.119 3.881 22 N -0.485 5.485 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.400 0.600 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.386 0.614 36 H 0.256 0.744 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.509 2.445 -19.107 25.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.016 4.016 3 C -0.191 4.191 4 C -0.084 4.084 5 C -0.124 4.124 6 C -0.138 4.138 7 C 0.295 3.705 8 O -0.411 6.411 9 N -0.375 5.375 10 C -0.013 4.013 11 C 0.017 3.983 12 N -0.375 5.375 13 C -0.375 4.375 14 H 0.090 0.910 15 C -0.209 4.209 16 N -0.578 5.578 17 Si 0.741 3.259 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C -0.038 4.038 22 N -0.194 5.194 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.234 0.766 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.220 0.780 36 H 0.066 0.934 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -17.377 1.682 -18.433 25.389 hybrid contribution 1.775 0.786 0.238 1.956 sum -15.603 2.468 -18.195 24.095 Atomic orbital electron populations 1.20701 0.88950 1.03504 1.02882 1.21297 0.97018 0.88473 0.94808 1.21899 0.94729 0.99252 1.03255 1.21434 0.94440 0.97741 0.94776 1.20276 0.95263 0.94613 1.02217 1.20595 0.92231 1.05628 0.95386 1.20439 0.82394 0.76742 0.90974 1.90750 1.55463 1.48873 1.45979 1.45938 1.06807 1.75058 1.09723 1.21580 0.95698 1.02539 0.81484 1.20753 0.89489 0.98382 0.89694 1.42206 1.05216 1.89536 1.00568 1.19236 0.83091 1.43244 0.91918 0.90960 1.24796 0.97928 1.02659 0.95531 1.69681 1.32758 1.57189 0.98217 0.86072 0.84753 0.77268 0.77788 1.20499 1.21758 1.21752 1.22563 0.89223 0.97845 0.94182 1.67514 1.09746 1.29378 1.12790 0.90540 0.90478 0.90764 0.84867 0.84927 0.87536 0.87714 0.76614 0.91353 0.91294 0.95782 0.95819 0.78007 0.93382 0.82933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.17 36.01 0.37 -0.41 16 2 C 0.12 1.32 6.78 -82.59 -0.56 0.76 16 3 C -0.17 -1.67 9.74 -39.44 -0.38 -2.05 16 4 C -0.06 -0.59 9.86 -39.27 -0.39 -0.98 16 5 C -0.12 -1.30 4.39 -104.48 -0.46 -1.76 16 6 C -0.10 -0.85 5.85 -29.03 -0.17 -1.02 16 7 C 0.51 6.77 7.82 -10.98 -0.09 6.68 16 8 O -0.53 -9.70 16.03 5.56 0.09 -9.61 16 9 N -0.72 -9.24 5.56 -60.29 -0.33 -9.57 16 10 C 0.11 1.87 5.79 -4.04 -0.02 1.85 16 11 C 0.15 2.79 6.37 -4.04 -0.03 2.77 16 12 N -0.73 -18.53 5.60 -59.91 -0.34 -18.86 16 13 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 14 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 15 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 16 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 17 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 C 0.12 1.39 10.86 -17.55 -0.19 1.20 16 22 N -0.49 -6.15 10.27 -9.47 -0.10 -6.25 16 23 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 26 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 27 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.11 0.65 8.10 -51.93 -0.42 0.23 16 29 H 0.10 0.64 8.09 -51.93 -0.42 0.22 16 30 H 0.40 3.78 8.47 -40.82 -0.35 3.44 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.39 10.41 7.67 -40.82 -0.31 10.10 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.15 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 324.11 15.07 4.88 4.88 Total: -1.00 -35.36 324.11 -7.53 -42.89 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.27 Total: 7.26 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -2.17 Total: -0.37 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: -0.04 Total: -62.28 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.36 -7.53 -42.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151160708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.292 kcal (2) G-P(sol) polarization free energy of solvation -35.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds