Wall clock time and date at job start Mon Mar 30 2020 19:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47373 * 2 1 4 4 N 1.46499 * 109.47329 * 180.02562 * 3 2 1 5 5 C 1.36686 * 119.99492 * 267.63295 * 4 3 2 6 6 H 1.07995 * 119.99991 * 324.83522 * 5 4 3 7 7 C 1.39177 * 119.99953 * 144.84526 * 5 4 3 8 8 N 1.31274 * 120.00026 * 336.29967 * 7 5 4 9 9 Si 1.86803 * 120.00223 * 156.30502 * 7 5 4 10 10 H 1.48504 * 109.46961 * 94.98324 * 9 7 5 11 11 H 1.48499 * 109.47239 * 214.98179 * 9 7 5 12 12 H 1.48491 * 109.46874 * 334.98752 * 9 7 5 13 13 C 1.34771 * 120.00576 * 87.62691 * 4 3 2 14 14 O 1.21540 * 120.00397 * 174.45707 * 13 4 3 15 15 C 1.48247 * 119.99902 * 354.73306 * 13 4 3 16 16 C 1.39666 * 120.56057 * 173.67336 * 15 13 4 17 17 C 1.38671 * 118.25818 * 179.97438 * 16 15 13 18 18 C 1.50699 * 120.42133 * 179.97438 * 17 16 15 19 19 N 1.32259 * 119.16276 * 359.97438 * 17 16 15 20 20 C 1.31895 * 121.05502 * 0.02562 * 19 17 16 21 21 C 1.50699 * 119.03377 * 180.02562 * 20 19 17 22 22 N 1.31568 * 121.92695 * 359.72987 * 20 19 17 23 23 H 1.09001 * 109.46927 * 60.00135 * 1 2 3 24 24 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47097 * 300.00941 * 1 2 3 26 26 H 1.08995 * 109.47573 * 239.99033 * 2 1 3 27 27 H 1.09006 * 109.46844 * 119.99146 * 2 1 3 28 28 H 1.08999 * 109.47778 * 59.99476 * 3 2 1 29 29 H 1.09006 * 109.46438 * 299.99394 * 3 2 1 30 30 H 0.97006 * 120.00459 * 185.05549 * 8 7 5 31 31 H 1.08004 * 120.87102 * 359.97438 * 16 15 13 32 32 H 1.08999 * 109.47325 * 89.99795 * 18 17 16 33 33 H 1.09000 * 109.46839 * 210.00081 * 18 17 16 34 34 H 1.08999 * 109.47244 * 329.99546 * 18 17 16 35 35 H 1.08995 * 109.47365 * 95.56929 * 21 20 19 36 36 H 1.09005 * 109.46841 * 215.56713 * 21 20 19 37 37 H 1.08998 * 109.47347 * 335.56419 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1888 1.4912 1.1819 6 1 3.7970 2.0643 2.0090 7 6 5.3903 0.8023 1.3199 8 7 5.6465 -0.2308 0.5515 9 14 6.6382 1.3476 2.5985 10 1 6.4508 0.5571 3.8416 11 1 8.0107 1.1294 2.0752 12 1 6.4449 2.7897 2.8952 13 6 4.1785 1.3943 -1.1670 14 8 5.3896 1.4958 -1.1741 15 6 3.4415 1.2237 -2.4419 16 6 4.1108 1.3037 -3.6652 17 6 3.3747 1.1362 -4.8284 18 6 4.0472 1.2134 -6.1748 19 7 2.0749 0.9078 -4.7414 20 6 1.4733 0.8381 -3.5697 21 6 -0.0099 0.5752 -3.5235 22 7 2.1312 0.9859 -2.4399 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 1.8934 -0.5139 -0.8898 27 1 1.8933 -0.5137 0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9562 -0.8901 30 1 6.4495 -0.7555 0.6960 31 1 5.1737 1.4911 -3.7042 32 1 4.3893 0.2208 -6.4676 33 1 3.3384 1.5863 -6.9141 34 1 4.9005 1.8892 -6.1165 35 1 -0.1856 -0.4909 -3.3804 36 1 -0.4517 1.1305 -2.6961 37 1 -0.4651 0.8960 -4.4605 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330836708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:09:10 Heat of formation + Delta-G solvation = 31.627644 kcal Electronic energy + Delta-G solvation = -20621.956059 eV Core-core repulsion = 17593.539565 eV Total energy + Delta-G solvation = -3028.416494 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.67508 -38.12296 -35.08090 -33.97541 -33.04561 -32.38198 -31.07551 -28.94166 -27.66610 -25.96413 -25.09463 -22.98176 -21.78153 -20.87083 -19.45732 -17.71107 -16.37621 -15.87798 -15.13317 -15.06049 -14.75954 -14.20942 -14.06329 -13.60570 -13.43114 -13.23822 -12.79773 -12.67979 -12.28453 -12.25151 -12.09936 -12.03314 -11.49767 -11.20845 -11.12233 -10.93716 -10.71444 -10.46313 -10.27007 -10.20991 -10.05927 -9.43772 -9.00369 -8.81545 -8.75793 -8.06733 -7.20732 -6.29066 -3.85296 1.27694 1.43493 3.24399 3.35239 3.37802 3.86809 4.16712 4.27084 4.47250 4.67739 4.79388 5.20806 5.28119 5.35615 5.61395 5.64294 5.65206 5.69082 5.75203 5.81058 5.87843 5.93271 6.00565 6.11794 6.23094 6.30996 6.37932 6.61795 6.62687 6.69542 6.91271 7.10525 7.33665 7.44581 7.50903 8.07157 8.56316 8.86901 9.09495 9.51739 10.21822 10.77999 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.020848 B = 0.007773 C = 0.005952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.706151 B = 3601.442160 C = 4703.033499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.109 3.891 4 N -0.412 5.412 5 C -0.334 4.334 6 H 0.090 0.910 7 C 0.066 3.934 8 N -0.800 5.800 9 Si 0.917 3.083 10 H -0.282 1.282 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.484 3.516 14 O -0.538 6.538 15 C 0.169 3.831 16 C -0.196 4.196 17 C 0.163 3.837 18 C -0.099 4.099 19 N -0.535 5.535 20 C 0.301 3.699 21 C -0.080 4.080 22 N -0.495 5.495 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.084 0.916 30 H 0.269 0.731 31 H 0.148 0.852 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.336 1.112 -7.334 11.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C -0.014 4.014 4 N -0.129 5.129 5 C -0.462 4.462 6 H 0.107 0.893 7 C -0.147 4.147 8 N -0.433 5.433 9 Si 0.743 3.257 10 H -0.208 1.208 11 H -0.207 1.207 12 H -0.193 1.193 13 C 0.272 3.728 14 O -0.418 6.418 15 C 0.022 3.978 16 C -0.219 4.219 17 C 0.017 3.983 18 C -0.157 4.157 19 N -0.253 5.253 20 C 0.033 3.967 21 C -0.138 4.138 22 N -0.214 5.214 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.166 0.834 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.501 0.902 -7.365 11.283 hybrid contribution 1.534 0.078 0.577 1.641 sum -6.967 0.980 -6.788 9.776 Atomic orbital electron populations 1.21722 0.97065 1.00336 1.00926 1.21645 0.93853 0.98205 1.01781 1.21825 0.82261 0.96666 1.00698 1.43313 1.04183 1.60704 1.04713 1.19290 1.05136 1.30753 0.91029 0.89283 1.25228 0.98687 0.93850 0.96983 1.69817 1.25170 1.12642 1.35716 0.86115 0.80566 0.79477 0.79537 1.20794 1.20700 1.19328 1.17140 0.86718 0.87545 0.81421 1.90595 1.12795 1.53626 1.84736 1.22508 0.89186 0.89903 0.96177 1.22617 1.02950 1.03750 0.92631 1.21552 0.89501 0.91394 0.95828 1.20690 1.00032 1.03122 0.91844 1.67920 1.10841 1.16916 1.29589 1.23217 0.97728 0.91869 0.83886 1.20540 0.86962 1.02945 1.03386 1.68970 1.08601 1.14382 1.29446 0.92811 0.93881 0.93683 0.91771 0.92775 0.93156 0.89829 0.92069 0.83398 0.90170 0.90430 0.90381 0.90105 0.89764 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.12 -2.28 5.61 -26.73 -0.15 -2.43 16 3 C 0.11 2.30 4.91 -4.04 -0.02 2.28 16 4 N -0.41 -10.65 2.56 -115.76 -0.30 -10.95 16 5 C -0.33 -9.14 9.28 -15.04 -0.14 -9.28 16 6 H 0.09 2.30 7.94 -52.49 -0.42 1.88 16 7 C 0.07 1.83 4.21 -17.44 -0.07 1.76 16 8 N -0.80 -23.46 11.47 55.51 0.64 -22.82 16 9 Si 0.92 21.49 29.62 -169.99 -5.03 16.46 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 C 0.48 12.95 6.86 -12.15 -0.08 12.87 16 14 O -0.54 -16.14 13.85 5.33 0.07 -16.07 16 15 C 0.17 3.81 6.57 -82.64 -0.54 3.27 16 16 C -0.20 -3.92 9.40 -38.89 -0.37 -4.28 16 17 C 0.16 2.77 6.83 -82.25 -0.56 2.20 16 18 C -0.10 -1.21 10.22 36.00 0.37 -0.84 16 19 N -0.53 -9.30 10.25 -7.01 -0.07 -9.38 16 20 C 0.30 5.22 7.64 -157.30 -1.20 4.02 16 21 C -0.08 -1.01 9.99 36.00 0.36 -0.65 16 22 N -0.49 -9.82 4.24 -7.33 -0.03 -9.85 16 23 H 0.05 0.72 6.08 -51.93 -0.32 0.41 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 1.38 6.49 -51.93 -0.34 1.05 16 27 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.05 1.00 8.02 -51.93 -0.42 0.58 16 29 H 0.08 1.69 5.54 -51.93 -0.29 1.40 16 30 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 31 H 0.15 2.92 7.75 -52.48 -0.41 2.51 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.98 6.48 -51.93 -0.34 0.64 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 306.42 15.07 4.62 4.62 Total: -1.00 -32.70 306.42 -7.18 -39.88 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -5.03 Total: 0.95 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -2.04 Total: 7.17 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.24 Total: -53.00 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.07 Total: -16.07 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.70 -7.18 -39.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330836708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.504 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds