Wall clock time and date at job start Mon Mar 30 2020 19:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.43737 * 61.08917 * 9 7 2 11 11 C 1.54265 * 110.48502 * 298.54711 * 9 7 2 12 12 C 1.53880 * 106.59999 * 217.71116 * 11 9 7 13 13 C 1.54266 * 106.59514 * 359.97438 * 12 11 9 14 14 H 1.08999 * 110.49028 * 264.80074 * 13 12 11 15 15 N 1.46902 * 110.48272 * 142.28404 * 13 12 11 16 16 C 1.46908 * 110.99574 * 86.45606 * 15 13 12 17 17 H 1.08998 * 110.01636 * 326.39117 * 16 15 13 18 18 C 1.54268 * 110.03029 * 87.83123 * 16 15 13 19 19 C 1.54893 * 104.19326 * 142.89701 * 18 16 15 20 20 C 1.54890 * 102.74669 * 322.05397 * 19 18 16 21 21 C 1.53875 * 110.03268 * 204.99628 * 16 15 13 22 22 H 1.09002 * 110.02755 * 121.38360 * 21 16 15 23 23 C 1.52998 * 110.03189 * 0.02562 * 21 16 15 24 24 C 1.53004 * 117.50106 * 128.74218 * 23 21 16 25 25 C 1.52998 * 117.50042 * 60.08407 * 23 21 16 26 26 C 1.54889 * 110.48563 * 183.77210 * 9 7 2 27 27 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 28 28 H 1.09004 * 110.03642 * 336.99877 * 11 9 7 29 29 H 1.09004 * 110.03404 * 98.38099 * 11 9 7 30 30 H 1.08996 * 110.03108 * 119.28625 * 12 11 9 31 31 H 1.09002 * 110.02989 * 240.66851 * 12 11 9 32 32 H 1.00898 * 111.00115 * 210.40418 * 15 13 12 33 33 H 1.09002 * 110.48660 * 261.57045 * 18 16 15 34 34 H 1.08997 * 110.49020 * 24.21602 * 18 16 15 35 35 H 1.09000 * 110.75261 * 203.74415 * 19 18 16 36 36 H 1.08998 * 110.76005 * 80.37206 * 19 18 16 37 37 H 1.08999 * 110.48715 * 279.26696 * 20 19 18 38 38 H 1.09000 * 110.48323 * 156.62035 * 20 19 18 39 39 H 1.08999 * 115.55076 * 274.41820 * 23 21 16 40 40 H 1.09004 * 117.49656 * 0.02562 * 24 23 21 41 41 H 1.08996 * 117.49850 * 145.01518 * 24 23 21 42 42 H 1.09003 * 117.50668 * 214.98171 * 25 23 21 43 43 H 1.09007 * 117.50075 * 359.97438 * 25 23 21 44 44 H 1.08999 * 110.75690 * 274.92994 * 26 9 7 45 45 H 1.09000 * 110.75647 * 38.30774 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6328 -2.5817 -0.8944 11 6 0.3836 -2.6217 1.2692 12 6 0.4452 -4.0968 1.7030 13 6 1.3475 -4.8192 0.6813 14 1 0.7447 -5.2806 -0.1009 15 7 2.1776 -5.8288 1.3521 16 6 1.4624 -7.1069 1.4661 17 1 0.3964 -6.9269 1.6049 18 6 1.6953 -7.9574 0.2002 19 6 1.7958 -9.4090 0.7312 20 6 2.5699 -9.2336 2.0612 21 6 2.0186 -7.9184 2.6493 22 1 1.2224 -8.1322 3.3624 23 6 3.1418 -7.1397 3.3369 24 6 3.0519 -6.9615 4.8539 25 6 2.7945 -5.7712 3.9264 26 6 2.2340 -3.6925 0.0943 27 1 -0.4850 -0.8401 0.0004 28 1 0.7832 -1.9837 2.0575 29 1 -0.6456 -2.3399 1.0469 30 1 0.8747 -4.1746 2.7018 31 1 -0.5544 -4.5313 1.6918 32 1 3.0581 -5.9485 0.8741 33 1 0.8536 -7.8595 -0.4854 34 1 2.6239 -7.6654 -0.2901 35 1 2.3563 -10.0360 0.0378 36 1 0.8042 -9.8234 0.9131 37 1 3.6398 -9.1477 1.8714 38 1 2.3665 -10.0670 2.7337 39 1 4.1338 -7.2634 2.9026 40 1 2.1927 -7.3994 5.3620 41 1 3.9848 -6.9677 5.4175 42 1 3.5581 -4.9947 3.8804 43 1 1.7658 -5.4254 3.8240 44 1 2.6041 -3.9675 -0.8934 45 1 3.0598 -3.4602 0.7667 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449444607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:09:37 Heat of formation + Delta-G solvation = -2.197393 kcal Electronic energy + Delta-G solvation = -20879.789622 eV Core-core repulsion = 18089.279803 eV Total energy + Delta-G solvation = -2790.509820 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 263.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.55967 -37.34278 -35.77729 -33.63792 -31.62164 -28.68627 -28.10180 -27.51374 -25.00146 -23.54129 -22.08451 -21.80563 -20.79316 -19.67055 -19.13929 -18.62908 -16.77721 -16.07421 -15.64158 -15.23406 -14.55867 -14.07068 -13.89603 -13.72086 -13.50621 -13.01786 -12.73906 -12.31387 -12.10059 -12.00675 -11.51304 -11.18268 -11.15644 -11.12354 -10.83549 -10.78759 -10.58399 -10.52349 -10.36022 -10.21266 -10.04943 -10.00259 -9.80774 -9.66486 -9.47574 -9.21078 -8.37022 -8.26087 -7.87202 -6.25064 -3.96903 3.47422 3.50953 3.64361 4.12774 4.39095 4.54091 4.58964 4.67199 4.90367 5.07220 5.26974 5.31549 5.39889 5.45692 5.46443 5.50329 5.58595 5.63871 5.66929 5.71814 5.79166 5.83525 5.87680 5.89085 5.97079 6.07972 6.18723 6.24831 6.30507 6.37347 6.43682 6.49771 6.52513 6.66610 6.78118 6.79649 6.89547 7.07365 7.19946 7.44477 7.59632 7.76550 7.81786 8.35199 8.53395 8.98455 9.75125 11.12890 Molecular weight = 263.19amu Principal moments of inertia in cm(-1) A = 0.029358 B = 0.004609 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.519112 B = 6073.262945 C = 6501.202104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.018 3.982 3 Si 1.070 2.930 4 H -0.290 1.290 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.591 4.591 8 H 0.048 0.952 9 C 0.035 3.965 10 H 0.015 0.985 11 C -0.111 4.111 12 C -0.112 4.112 13 C 0.079 3.921 14 H 0.035 0.965 15 N -0.662 5.662 16 C 0.089 3.911 17 H 0.075 0.925 18 C -0.153 4.153 19 C -0.123 4.123 20 C -0.117 4.117 21 C -0.053 4.053 22 H 0.068 0.932 23 C -0.122 4.122 24 C -0.209 4.209 25 C -0.124 4.124 26 C -0.105 4.105 27 H 0.273 0.727 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.336 0.664 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.041 0.959 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.118 -17.750 4.798 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.186 4.186 3 Si 0.899 3.101 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.629 4.629 8 H 0.066 0.934 9 C 0.016 3.984 10 H 0.033 0.967 11 C -0.150 4.150 12 C -0.150 4.150 13 C -0.030 4.030 14 H 0.053 0.947 15 N -0.291 5.291 16 C -0.022 4.022 17 H 0.093 0.907 18 C -0.192 4.192 19 C -0.161 4.161 20 C -0.155 4.155 21 C -0.072 4.072 22 H 0.086 0.914 23 C -0.140 4.140 24 C -0.246 4.246 25 C -0.161 4.161 26 C -0.143 4.143 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.155 0.845 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.115 0.885 44 H 0.060 0.940 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.748 -15.869 5.433 17.187 hybrid contribution 0.143 -2.017 -0.976 2.245 sum 3.891 -17.886 4.457 18.839 Atomic orbital electron populations 1.70725 1.06870 1.31121 1.46744 1.25735 0.96582 1.02421 0.93830 0.83531 0.74518 0.75165 0.76843 1.21634 1.21458 1.21524 1.22041 0.94002 0.91485 1.55393 0.93375 1.19535 0.92787 0.93314 0.92783 0.96674 1.22326 0.99507 0.92883 1.00237 1.22247 0.96851 0.96852 0.99041 1.22486 0.94662 0.91776 0.94057 0.94734 1.60844 1.06003 1.06457 1.55788 1.22208 0.97992 0.89139 0.92843 0.90710 1.23139 1.01559 0.95994 0.98529 1.22425 1.00187 0.96519 0.96960 1.22432 0.99809 0.97039 0.96206 1.21389 0.96367 0.93356 0.96133 0.91379 1.21850 0.98334 1.00642 0.93190 1.23160 1.02175 1.06162 0.93095 1.22669 1.02942 0.90544 0.99989 1.22581 0.98617 0.95004 0.98122 0.91524 0.92437 0.93872 0.91595 0.94413 0.84538 0.92023 0.91564 0.91952 0.91734 0.91583 0.92043 0.89012 0.89873 0.89947 0.89614 0.88542 0.94027 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.74 13.42 55.43 0.74 -26.99 16 2 C 0.02 0.52 5.33 -17.82 -0.09 0.43 16 3 Si 1.07 25.54 29.90 -169.99 -5.08 20.46 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.59 -16.62 8.40 -34.44 -0.29 -16.91 16 8 H 0.05 1.36 7.77 -52.49 -0.41 0.95 16 9 C 0.03 0.87 2.44 -90.11 -0.22 0.65 16 10 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 11 C -0.11 -2.58 5.28 -25.61 -0.14 -2.71 16 12 C -0.11 -2.10 6.37 -25.61 -0.16 -2.26 16 13 C 0.08 1.37 2.99 -66.04 -0.20 1.17 16 14 H 0.03 0.61 7.86 -51.93 -0.41 0.20 16 15 N -0.66 -9.26 2.86 -96.82 -0.28 -9.54 16 16 C 0.09 1.09 2.97 -66.59 -0.20 0.89 16 17 H 0.07 1.01 7.77 -51.93 -0.40 0.60 16 18 C -0.15 -1.69 6.39 -25.07 -0.16 -1.85 16 19 C -0.12 -1.15 6.91 -24.74 -0.17 -1.32 16 20 C -0.12 -1.11 6.36 -25.07 -0.16 -1.27 16 21 C -0.05 -0.59 3.10 -89.51 -0.28 -0.86 16 22 H 0.07 0.77 7.93 -51.93 -0.41 0.35 16 23 C -0.12 -1.41 4.41 -90.62 -0.40 -1.81 16 24 C -0.21 -2.38 10.19 -26.69 -0.27 -2.65 16 25 C -0.12 -1.64 8.37 -26.70 -0.22 -1.86 16 26 C -0.11 -2.15 5.69 -24.72 -0.14 -2.29 16 27 H 0.27 8.15 5.45 -40.82 -0.22 7.93 16 28 H 0.06 1.45 7.83 -51.93 -0.41 1.05 16 29 H 0.04 1.04 6.82 -51.93 -0.35 0.69 16 30 H 0.07 1.21 6.16 -51.93 -0.32 0.89 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.34 4.61 7.81 -39.29 -0.31 4.31 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.75 7.56 -51.93 -0.39 0.35 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.62 7.63 -51.93 -0.40 0.23 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 1.06 7.80 -51.93 -0.41 0.66 16 40 H 0.08 0.91 8.06 -51.93 -0.42 0.49 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.10 1.42 6.07 -51.93 -0.32 1.11 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.07 1.42 8.05 -51.93 -0.42 1.00 16 LS Contribution 336.47 15.07 5.07 5.07 Total: -1.00 -28.45 336.47 -10.83 -39.28 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -8.18 Total: 4.38 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: -3.10 Total: -32.66 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.47 Total: -36.53 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.08 Total: 20.46 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.45 -10.83 -39.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449444607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.081 kcal (2) G-P(sol) polarization free energy of solvation -28.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds