Wall clock time and date at job start Mon Mar 30 2020 19:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46945 * 2 1 4 4 C 1.53006 * 109.47234 * 119.99498 * 2 1 3 5 5 N 1.46898 * 109.47006 * 295.00220 * 4 2 1 6 6 C 1.46903 * 110.99673 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.46899 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47202 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47357 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99687 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00137 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00007 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99960 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.46806 * 90.00439 * 13 11 9 15 15 H 1.48499 * 109.47352 * 209.99896 * 13 11 9 16 16 H 1.48493 * 109.47395 * 329.99983 * 13 11 9 17 17 C 1.50703 * 109.47333 * 239.99727 * 2 1 3 18 18 C 1.38247 * 119.97225 * 299.72118 * 17 2 1 19 19 C 1.38196 * 120.02425 * 179.76721 * 18 17 2 20 20 C 1.38469 * 119.96928 * 0.50841 * 19 18 17 21 21 F 1.35101 * 120.01806 * 179.76710 * 20 19 18 22 22 C 1.38454 * 119.95219 * 359.74856 * 20 19 18 23 23 C 1.38195 * 119.97311 * 359.97438 * 22 20 19 24 24 H 1.09003 * 109.47743 * 299.99957 * 1 2 3 25 25 H 1.09002 * 109.47112 * 60.00472 * 1 2 3 26 26 H 1.09006 * 109.47389 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47002 * 55.00002 * 4 2 1 28 28 H 1.08993 * 109.46955 * 175.00440 * 4 2 1 29 29 H 1.00906 * 111.00348 * 56.04933 * 5 4 2 30 30 H 1.08993 * 109.47323 * 299.99830 * 6 5 4 31 31 H 1.08995 * 109.46831 * 60.00909 * 6 5 4 32 32 H 1.08997 * 109.47273 * 300.00783 * 7 6 5 33 33 H 1.09002 * 109.47027 * 60.00056 * 7 6 5 34 34 H 1.09006 * 109.47316 * 300.00462 * 8 7 6 35 35 H 1.09002 * 109.47225 * 60.00005 * 8 7 6 36 36 H 0.97002 * 120.00059 * 180.02562 * 12 11 9 37 37 H 1.07999 * 119.98450 * 0.02732 * 18 17 2 38 38 H 1.07996 * 120.01640 * 180.25920 * 19 18 17 39 39 H 1.07997 * 120.01157 * 179.97438 * 22 20 19 40 40 H 1.08002 * 119.98649 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6513 0.0376 2.4456 6 6 2.1247 -0.6269 3.6673 7 6 1.7024 0.1913 4.8892 8 6 2.1960 -0.5004 6.1615 9 6 1.7795 0.3051 7.3652 10 1 1.2184 1.2188 7.2356 11 6 2.1146 -0.1243 8.6317 12 7 2.7983 -1.2367 8.7895 13 14 1.5989 0.8745 10.1236 14 1 0.2659 0.4152 10.5901 15 1 2.5940 0.6908 11.2105 16 1 1.5268 2.3115 9.7564 17 6 2.0323 -0.7105 -1.2304 18 6 1.7028 -2.0357 -1.4457 19 6 2.1589 -2.6869 -2.5760 20 6 2.9550 -2.0144 -3.4879 21 9 3.4054 -2.6514 -4.5909 22 6 3.2888 -0.6887 -3.2685 23 6 2.8267 -0.0380 -2.1403 24 1 -0.3635 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6054 -1.7197 1.2953 28 1 3.1262 -0.7993 1.2057 29 1 0.6527 0.1794 2.4754 30 1 1.6904 -1.6246 3.7298 31 1 3.2116 -0.7047 3.6406 32 1 2.1370 1.1889 4.8264 33 1 0.6155 0.2696 4.9161 34 1 1.7617 -1.4982 6.2245 35 1 3.2829 -0.5784 6.1345 36 1 3.0338 -1.5391 9.6806 37 1 1.0852 -2.5611 -0.7323 38 1 1.8980 -3.7210 -2.7462 39 1 3.9099 -0.1634 -3.9789 40 1 3.0866 0.9962 -1.9692 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272055152.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:18:34 Heat of formation + Delta-G solvation = -50.566391 kcal Electronic energy + Delta-G solvation = -18743.683083 eV Core-core repulsion = 15664.470948 eV Total energy + Delta-G solvation = -3079.212135 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.13954 -39.77203 -37.00797 -34.61452 -32.96097 -31.44487 -30.90894 -29.11208 -26.85882 -25.08941 -23.55491 -22.94741 -22.00242 -20.48560 -19.82932 -17.96672 -16.74592 -16.39644 -15.88098 -15.84554 -15.70427 -14.73804 -14.50337 -14.23338 -14.12894 -13.80328 -13.70241 -13.37437 -13.01453 -12.80455 -12.45583 -12.20404 -11.83973 -11.57129 -11.39996 -11.15494 -11.08173 -10.93835 -10.76334 -10.56087 -10.45833 -9.68588 -9.40331 -9.33843 -9.05509 -8.78740 -8.33359 -8.18657 -5.98461 -4.00539 0.85328 0.93959 3.28446 3.32920 3.39055 3.42881 3.98665 4.21630 4.40770 4.47650 4.58341 4.68694 4.86961 4.95365 4.98532 5.12649 5.23653 5.37329 5.54151 5.55346 5.61496 5.76471 5.79007 5.82134 5.83765 5.90076 5.93896 5.98562 6.09105 6.32329 6.34907 6.60807 6.72227 6.76730 7.14657 7.32583 7.61849 7.69949 7.84905 8.02078 8.45290 9.06774 9.63399 11.13034 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.047847 B = 0.002500 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.060459 B =11195.223760 C =11428.884315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.052 4.052 3 H 0.090 0.910 4 C 0.066 3.934 5 N -0.692 5.692 6 C 0.059 3.941 7 C -0.107 4.107 8 C 0.022 3.978 9 C -0.518 4.518 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.892 3.108 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.080 4.080 18 C -0.086 4.086 19 C -0.152 4.152 20 C 0.088 3.912 21 F -0.143 7.143 22 C -0.152 4.152 23 C -0.086 4.086 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.028 0.972 28 H 0.071 0.929 29 H 0.337 0.663 30 H 0.024 0.976 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.013 0.987 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.356 -0.365 -24.743 24.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.071 4.071 3 H 0.109 0.891 4 C -0.064 4.064 5 N -0.323 5.323 6 C -0.070 4.070 7 C -0.145 4.145 8 C -0.016 4.016 9 C -0.557 4.557 10 H 0.073 0.927 11 C -0.146 4.146 12 N -0.536 5.536 13 Si 0.720 3.280 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.081 4.081 18 C -0.104 4.104 19 C -0.171 4.171 20 C 0.069 3.931 21 F -0.122 7.122 22 C -0.171 4.171 23 C -0.104 4.104 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.155 0.845 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.032 0.968 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.714 -0.079 -24.676 24.736 hybrid contribution -0.696 -0.519 0.703 1.117 sum -2.410 -0.599 -23.973 24.101 Atomic orbital electron populations 1.21886 0.94227 1.02007 1.02334 1.20195 0.96016 1.00000 0.90855 0.89137 1.21983 1.00755 0.94378 0.89252 1.60591 1.19497 1.50415 1.01800 1.22128 1.00181 0.95524 0.89138 1.21622 0.99667 0.99211 0.93976 1.19069 0.96484 0.95598 0.90455 1.21261 1.34835 1.08432 0.91152 0.92662 1.25037 0.95247 0.95160 0.99136 1.69969 1.39176 1.22019 1.22483 0.86591 0.78262 0.80590 0.82547 1.20708 1.21240 1.19848 1.19987 0.97482 0.94154 0.96467 1.20922 0.98936 0.94150 0.96350 1.21150 0.99817 1.01066 0.95026 1.17740 0.98739 0.91545 0.85044 1.91493 1.87588 1.82011 1.51109 1.21143 1.02867 0.93327 0.99776 1.20990 0.96310 1.00246 0.92865 0.91555 0.92417 0.92682 0.95357 0.91010 0.84461 0.95781 0.91484 0.92536 0.93693 0.96841 0.96567 0.93040 0.85036 0.84841 0.84824 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.78 37.15 0.33 -0.92 16 2 C -0.05 -0.48 2.77 -91.77 -0.25 -0.74 16 3 H 0.09 0.87 7.88 -51.93 -0.41 0.46 16 4 C 0.07 0.76 4.88 -3.82 -0.02 0.74 16 5 N -0.69 -9.68 6.50 -113.78 -0.74 -10.42 16 6 C 0.06 1.01 5.69 -3.82 -0.02 0.99 16 7 C -0.11 -2.21 5.41 -26.73 -0.14 -2.35 16 8 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 9 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 10 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 11 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 13 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 17 C -0.08 -0.73 4.78 -104.61 -0.50 -1.23 16 18 C -0.09 -0.75 8.76 -39.59 -0.35 -1.10 16 19 C -0.15 -1.35 10.03 -39.51 -0.40 -1.75 16 20 C 0.09 0.86 7.30 -39.42 -0.29 0.57 16 21 F -0.14 -1.50 17.27 2.25 0.04 -1.47 16 22 C -0.15 -1.32 10.03 -39.52 -0.40 -1.71 16 23 C -0.09 -0.73 9.67 -39.59 -0.38 -1.11 16 24 H 0.07 0.58 6.68 -51.93 -0.35 0.23 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.44 7.40 -51.93 -0.38 0.06 16 27 H 0.03 0.32 7.55 -51.93 -0.39 -0.07 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.34 4.36 6.98 -39.29 -0.27 4.08 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.13 1.02 7.16 -52.49 -0.38 0.64 16 38 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 40 H 0.13 0.91 7.94 -52.49 -0.42 0.49 16 LS Contribution 334.44 15.07 5.04 5.04 Total: -1.00 -30.53 334.44 -9.29 -39.82 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -6.37 Total: -1.42 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: -2.97 Total: -21.86 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.00 Total: -36.91 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.53 -9.29 -39.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272055152.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.749 kcal (2) G-P(sol) polarization free energy of solvation -30.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds