Wall clock time and date at job start Mon Mar 30 2020 19:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 O 1.21281 * 119.99736 * 119.99813 * 4 2 1 6 6 N 1.34770 * 120.00019 * 300.00531 * 4 2 1 7 7 C 1.46512 * 119.99646 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.46797 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.47060 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47473 * 179.97438 * 9 8 7 11 11 C 1.36935 * 120.00352 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99766 * 359.97438 * 11 10 9 13 13 C 1.38804 * 120.00002 * 180.02562 * 11 10 9 14 14 N 1.31619 * 120.00365 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99917 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47023 * 59.99441 * 15 13 11 17 17 H 1.48502 * 109.46862 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46638 * 299.99206 * 15 13 11 19 19 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 20 20 C 1.36344 * 125.63165 * 299.69202 * 19 2 1 21 21 C 1.34857 * 108.21810 * 179.83279 * 20 19 2 22 22 C 1.40896 * 107.41160 * 0.42434 * 21 20 19 23 23 C 1.34845 * 107.41907 * 359.73348 * 22 21 20 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 27 27 H 0.96992 * 120.00518 * 359.97438 * 6 4 2 28 28 H 1.09001 * 109.47027 * 299.99897 * 7 6 4 29 29 H 1.08992 * 109.46968 * 60.00347 * 7 6 4 30 30 H 1.09001 * 109.47194 * 299.99728 * 8 7 6 31 31 H 1.09002 * 109.47398 * 59.99909 * 8 7 6 32 32 H 1.08998 * 109.47076 * 300.00326 * 9 8 7 33 33 H 1.09002 * 109.47153 * 59.99681 * 9 8 7 34 34 H 0.97004 * 119.99396 * 359.97438 * 10 9 8 35 35 H 0.96998 * 120.00532 * 180.02562 * 14 13 11 36 36 H 1.08000 * 125.89402 * 359.96313 * 20 19 2 37 37 H 1.07990 * 126.29452 * 180.16071 * 21 20 19 38 38 H 1.08003 * 126.28473 * 179.73871 * 22 21 20 39 39 H 1.08001 * 125.89015 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4545 7 6 2.1947 -0.9411 3.6507 8 6 1.6842 -0.2202 4.9000 9 6 2.1943 -0.9414 6.1492 10 7 1.7060 -0.2509 7.3454 11 6 2.0373 -0.7184 8.5891 12 1 2.6582 -1.5965 8.6881 13 6 1.5742 -0.0644 9.7224 14 7 0.8170 1.0054 9.6018 15 14 2.0256 -0.7026 11.4191 16 1 3.5022 -0.6903 11.5758 17 1 1.4110 0.1666 12.4545 18 1 1.5226 -2.0911 11.5755 19 7 2.0184 -0.6905 -1.1962 20 6 1.7657 -1.9901 -1.5221 21 6 2.3800 -2.2585 -2.6922 22 6 3.0442 -1.0843 -3.0987 23 6 2.8055 -0.1415 -2.1647 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.1494 0.5388 2.5436 28 1 1.8310 -1.9686 3.6505 29 1 3.2846 -0.9413 3.6509 30 1 2.0475 0.8075 4.9004 31 1 0.5942 -0.2202 4.8996 32 1 1.8314 -1.9692 6.1489 33 1 3.2843 -0.9410 6.1493 34 1 1.1486 0.5380 7.2564 35 1 0.4937 1.4627 10.3938 36 1 1.1737 -2.6842 -0.9440 37 1 2.3689 -3.2014 -3.2184 38 1 3.6357 -0.9619 -3.9941 39 1 3.1746 0.8734 -2.1807 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156657504.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:19:26 Heat of formation + Delta-G solvation = 22.837048 kcal Electronic energy + Delta-G solvation = -19126.931985 eV Core-core repulsion = 16070.822823 eV Total energy + Delta-G solvation = -3056.109161 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.53884 -39.61774 -36.16920 -34.68379 -34.32124 -32.01801 -29.97332 -29.24145 -28.77587 -25.82373 -24.42066 -22.66701 -21.36408 -20.99083 -20.55439 -19.69716 -17.98583 -17.24555 -16.90702 -16.00018 -15.76454 -14.95354 -14.75979 -14.36404 -14.06831 -13.79325 -13.63458 -13.31613 -13.09033 -12.84672 -12.69974 -12.44331 -12.38794 -12.18560 -11.93679 -11.73220 -11.03747 -10.96741 -10.84392 -10.68116 -10.21140 -10.06071 -9.74889 -9.24461 -8.91925 -8.72365 -8.19533 -6.98568 -5.81361 -3.10657 2.08277 2.28479 2.57779 3.01694 3.06846 3.41989 3.46120 3.47301 4.17845 4.35731 4.40363 4.55085 4.79114 5.00782 5.08547 5.10101 5.17268 5.20646 5.46335 5.52046 5.52926 5.55407 5.56413 5.85919 5.96291 6.10482 6.20968 6.22903 6.24697 6.26811 6.71609 6.75796 6.91848 7.12904 7.14062 7.30743 7.65746 7.91651 8.37548 9.48683 10.04960 10.39634 11.41544 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.059800 B = 0.002622 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.112100 B =10675.101279 C =10904.050309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.115 3.885 3 H 0.123 0.877 4 C 0.498 3.502 5 O -0.519 6.519 6 N -0.721 5.721 7 C 0.123 3.877 8 C -0.137 4.137 9 C 0.156 3.844 10 N -0.734 5.734 11 C -0.242 4.242 12 H 0.071 0.929 13 C -0.014 4.014 14 N -0.935 5.935 15 Si 0.909 3.091 16 H -0.285 1.285 17 H -0.291 1.291 18 H -0.285 1.285 19 N -0.433 5.433 20 C 0.018 3.982 21 C -0.211 4.211 22 C -0.198 4.198 23 C -0.021 4.021 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.402 0.598 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.155 0.845 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.054 0.376 -23.746 23.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 H 0.141 0.859 4 C 0.281 3.719 5 O -0.394 6.394 6 N -0.373 5.373 7 C -0.001 4.001 8 C -0.176 4.176 9 C 0.028 3.972 10 N -0.378 5.378 11 C -0.373 4.373 12 H 0.089 0.911 13 C -0.210 4.210 14 N -0.584 5.584 15 Si 0.740 3.260 16 H -0.212 1.212 17 H -0.216 1.216 18 H -0.212 1.212 19 N -0.110 5.110 20 C -0.112 4.112 21 C -0.235 4.235 22 C -0.222 4.222 23 C -0.149 4.149 24 H 0.090 0.910 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.236 0.764 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.217 0.783 35 H 0.066 0.934 36 H 0.172 0.828 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.591 -0.274 -23.369 23.378 hybrid contribution -0.154 0.375 1.092 1.164 sum -0.746 0.101 -22.277 22.290 Atomic orbital electron populations 1.22139 0.91100 1.04288 1.04164 1.21283 0.96888 0.97521 0.83520 0.85929 1.20591 0.81156 0.85384 0.84751 1.90791 1.36750 1.25574 1.86317 1.46029 1.53557 1.32195 1.05561 1.21413 0.99574 0.96463 0.82625 1.21949 1.01536 1.00312 0.93762 1.20513 0.96506 0.94751 0.85411 1.42323 1.61566 1.33443 1.00464 1.19196 1.25816 1.08796 0.83476 0.91135 1.24755 1.00382 0.97909 0.97951 1.69644 1.39254 1.20869 1.28588 0.86235 0.77911 0.77895 0.83960 1.21194 1.21636 1.21188 1.43713 1.40038 1.10439 1.16784 1.21654 1.05730 0.85498 0.98300 1.20843 1.05178 0.99287 0.98169 1.20845 1.06343 0.93902 1.01151 1.21762 1.01582 0.99895 0.91701 0.91003 0.89882 0.90395 0.76389 0.91166 0.91194 0.91228 0.91204 0.96033 0.96048 0.78302 0.93415 0.82802 0.84929 0.84895 0.82414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.14 37.16 0.34 -0.62 16 2 C 0.11 0.95 3.36 -69.08 -0.23 0.72 16 3 H 0.12 0.71 8.06 -51.93 -0.42 0.29 16 4 C 0.50 5.71 7.11 -10.99 -0.08 5.63 16 5 O -0.52 -8.33 15.44 5.56 0.09 -8.24 16 6 N -0.72 -7.27 5.45 -60.29 -0.33 -7.59 16 7 C 0.12 1.56 5.67 -4.04 -0.02 1.53 16 8 C -0.14 -1.97 5.44 -26.73 -0.15 -2.12 16 9 C 0.16 3.04 6.26 -4.04 -0.03 3.01 16 10 N -0.73 -18.37 5.60 -59.91 -0.34 -18.71 16 11 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 12 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 13 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 14 N -0.94 -28.04 13.06 55.49 0.72 -27.32 16 15 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 19 N -0.43 -4.60 2.40 -111.25 -0.27 -4.86 16 20 C 0.02 0.21 9.56 -16.75 -0.16 0.05 16 21 C -0.21 -2.42 10.86 -39.78 -0.43 -2.85 16 22 C -0.20 -2.14 10.86 -39.78 -0.43 -2.57 16 23 C -0.02 -0.21 11.39 -16.75 -0.19 -0.40 16 24 H 0.07 0.50 7.92 -51.93 -0.41 0.09 16 25 H 0.08 0.36 7.56 -51.93 -0.39 -0.04 16 26 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.40 2.89 7.89 -40.82 -0.32 2.56 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.38 9.95 7.67 -40.82 -0.31 9.64 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 38 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 39 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 332.44 15.07 5.01 5.01 Total: -1.00 -34.43 332.44 -7.82 -42.25 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.05 Total: 7.21 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -1.63 Total: -5.04 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.21 Total: -58.48 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.09 Total: -8.24 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.43 -7.82 -42.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156657504.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.087 kcal (2) G-P(sol) polarization free energy of solvation -34.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds