Wall clock time and date at job start Mon Mar 30 2020 19:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 O 1.21281 * 119.99736 * 119.99813 * 4 2 1 6 6 N 1.34770 * 120.00019 * 300.00531 * 4 2 1 7 7 C 1.46512 * 119.99646 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.46797 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.47060 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47473 * 179.97438 * 9 8 7 11 11 C 1.36935 * 120.00352 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99766 * 359.97438 * 11 10 9 13 13 C 1.38804 * 120.00002 * 180.02562 * 11 10 9 14 14 N 1.31619 * 120.00365 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99917 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47023 * 59.99441 * 15 13 11 17 17 H 1.48502 * 109.46862 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46638 * 299.99206 * 15 13 11 19 19 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 20 20 C 1.36344 * 125.63165 * 299.69202 * 19 2 1 21 21 C 1.34857 * 108.21810 * 179.83279 * 20 19 2 22 22 C 1.40896 * 107.41160 * 0.42434 * 21 20 19 23 23 C 1.34845 * 107.41907 * 359.73348 * 22 21 20 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 27 27 H 0.96992 * 120.00518 * 359.97438 * 6 4 2 28 28 H 1.09001 * 109.47027 * 299.99897 * 7 6 4 29 29 H 1.08992 * 109.46968 * 60.00347 * 7 6 4 30 30 H 1.09001 * 109.47194 * 299.99728 * 8 7 6 31 31 H 1.09002 * 109.47398 * 59.99909 * 8 7 6 32 32 H 1.08998 * 109.47076 * 300.00326 * 9 8 7 33 33 H 1.09002 * 109.47153 * 59.99681 * 9 8 7 34 34 H 0.97004 * 119.99396 * 359.97438 * 10 9 8 35 35 H 0.96998 * 120.00532 * 180.02562 * 14 13 11 36 36 H 1.08000 * 125.89402 * 359.96313 * 20 19 2 37 37 H 1.07990 * 126.29452 * 180.16071 * 21 20 19 38 38 H 1.08003 * 126.28473 * 179.73871 * 22 21 20 39 39 H 1.08001 * 125.89015 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4545 7 6 2.1947 -0.9411 3.6507 8 6 1.6842 -0.2202 4.9000 9 6 2.1943 -0.9414 6.1492 10 7 1.7060 -0.2509 7.3454 11 6 2.0373 -0.7184 8.5891 12 1 2.6582 -1.5965 8.6881 13 6 1.5742 -0.0644 9.7224 14 7 0.8170 1.0054 9.6018 15 14 2.0256 -0.7026 11.4191 16 1 3.5022 -0.6903 11.5758 17 1 1.4110 0.1666 12.4545 18 1 1.5226 -2.0911 11.5755 19 7 2.0184 -0.6905 -1.1962 20 6 1.7657 -1.9901 -1.5221 21 6 2.3800 -2.2585 -2.6922 22 6 3.0442 -1.0843 -3.0987 23 6 2.8055 -0.1415 -2.1647 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.1494 0.5388 2.5436 28 1 1.8310 -1.9686 3.6505 29 1 3.2846 -0.9413 3.6509 30 1 2.0475 0.8075 4.9004 31 1 0.5942 -0.2202 4.8996 32 1 1.8314 -1.9692 6.1489 33 1 3.2843 -0.9410 6.1493 34 1 1.1486 0.5380 7.2564 35 1 0.4937 1.4627 10.3938 36 1 1.1737 -2.6842 -0.9440 37 1 2.3689 -3.2014 -3.2184 38 1 3.6357 -0.9619 -3.9941 39 1 3.1746 0.8734 -2.1807 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156657504.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:19:26 Heat of formation + Delta-G solvation = -0.432566 kcal Electronic energy + Delta-G solvation = -19127.941031 eV Core-core repulsion = 16070.822823 eV Total energy + Delta-G solvation = -3057.118208 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.32190 -40.54457 -37.55885 -35.99147 -35.28398 -33.70993 -31.41249 -30.15519 -29.56489 -27.20420 -25.54627 -24.20767 -22.62837 -22.00242 -21.33522 -20.55738 -19.25219 -18.65756 -17.93085 -17.05947 -16.87276 -16.41694 -15.92365 -15.50386 -15.30233 -14.99861 -14.84340 -14.46454 -14.35328 -13.94605 -13.41361 -13.33330 -13.23513 -13.05016 -12.95687 -12.80467 -12.64963 -12.58828 -12.45070 -12.11398 -12.07006 -11.81313 -11.07127 -10.95178 -10.21861 -9.52358 -9.03458 -9.00259 -7.98000 -5.27173 1.27025 1.40969 1.47208 1.49892 1.56098 1.83607 2.19083 2.24507 2.55262 3.35805 3.46298 3.73255 3.78430 3.81425 4.05945 4.12949 4.25804 4.39492 4.42771 4.56949 4.63539 4.69629 4.70306 4.76244 4.81261 4.85448 5.09150 5.23070 5.29426 5.33450 5.41562 5.44452 5.47274 6.11846 6.24751 6.30654 6.35851 6.54951 7.07712 7.31514 8.05946 8.29889 9.25169 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.059800 B = 0.002622 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.112100 B =10675.101279 C =10904.050309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.118 3.882 3 H 0.157 0.843 4 C 0.497 3.503 5 O -0.570 6.570 6 N -0.707 5.707 7 C 0.134 3.866 8 C -0.117 4.117 9 C 0.151 3.849 10 N -0.746 5.746 11 C -0.252 4.252 12 H 0.073 0.927 13 C -0.074 4.074 14 N -0.968 5.968 15 Si 0.974 3.026 16 H -0.278 1.278 17 H -0.293 1.293 18 H -0.278 1.278 19 N -0.437 5.437 20 C -0.003 4.003 21 C -0.228 4.228 22 C -0.219 4.219 23 C -0.021 4.021 24 H 0.057 0.943 25 H 0.105 0.895 26 H 0.089 0.911 27 H 0.419 0.581 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.021 0.979 33 H 0.020 0.980 34 H 0.376 0.624 35 H 0.253 0.747 36 H 0.152 0.848 37 H 0.139 0.861 38 H 0.147 0.853 39 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.155 1.325 -24.277 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.012 3.988 3 H 0.174 0.826 4 C 0.283 3.717 5 O -0.449 6.449 6 N -0.360 5.360 7 C 0.010 3.990 8 C -0.155 4.155 9 C 0.024 3.976 10 N -0.390 5.390 11 C -0.383 4.383 12 H 0.091 0.909 13 C -0.266 4.266 14 N -0.618 5.618 15 Si 0.802 3.198 16 H -0.204 1.204 17 H -0.219 1.219 18 H -0.204 1.204 19 N -0.114 5.114 20 C -0.133 4.133 21 C -0.253 4.253 22 C -0.243 4.243 23 C -0.150 4.150 24 H 0.076 0.924 25 H 0.124 0.876 26 H 0.108 0.892 27 H 0.257 0.743 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.039 0.961 33 H 0.038 0.962 34 H 0.209 0.791 35 H 0.062 0.938 36 H 0.169 0.831 37 H 0.156 0.844 38 H 0.165 0.835 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -0.702 0.682 -23.922 23.942 hybrid contribution -0.094 0.047 1.202 1.207 sum -0.796 0.729 -22.720 22.745 Atomic orbital electron populations 1.22156 0.89196 1.03953 1.05853 1.21518 0.98220 0.98115 0.80964 0.82598 1.21188 0.80119 0.84716 0.85713 1.90776 1.39146 1.27917 1.87041 1.45821 1.53258 1.32396 1.04507 1.21092 0.98909 0.96068 0.82957 1.21695 1.01826 1.00047 0.91977 1.20678 0.96330 0.94844 0.85737 1.42521 1.61571 1.33545 1.01314 1.19594 1.25155 1.08632 0.84947 0.90857 1.25572 1.00944 0.98474 1.01621 1.69786 1.40645 1.22153 1.29213 0.85211 0.77786 0.77384 0.79377 1.20426 1.21894 1.20405 1.43921 1.39939 1.10154 1.17386 1.21754 1.06466 0.86452 0.98653 1.21130 1.05525 1.00108 0.98516 1.21161 1.06984 0.93928 1.02260 1.22309 1.00562 1.01036 0.91072 0.92380 0.87649 0.89206 0.74315 0.92034 0.92181 0.90480 0.90378 0.96146 0.96218 0.79136 0.93835 0.83096 0.84357 0.83504 0.79411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.14 71.98 0.66 -0.78 16 2 C 0.12 1.65 3.36 44.25 0.15 1.80 16 3 H 0.16 1.16 8.06 -2.39 -0.02 1.14 16 4 C 0.50 10.63 7.11 87.66 0.62 11.26 16 5 O -0.57 -18.16 15.44 -3.03 -0.05 -18.21 16 6 N -0.71 -12.70 5.45 -463.05 -2.52 -15.23 16 7 C 0.13 3.23 5.67 86.38 0.49 3.72 16 8 C -0.12 -3.18 5.44 30.59 0.17 -3.01 16 9 C 0.15 5.76 6.26 86.38 0.54 6.30 16 10 N -0.75 -37.16 5.60 -343.46 -1.92 -39.08 16 11 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 12 H 0.07 3.95 7.83 -2.91 -0.02 3.92 16 13 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 14 N -0.97 -58.18 13.06 21.65 0.28 -57.90 16 15 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 17 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 N -0.44 -8.64 2.40 -505.90 -1.22 -9.85 16 20 C 0.00 -0.08 9.56 83.21 0.80 0.72 16 21 C -0.23 -5.27 10.86 22.14 0.24 -5.03 16 22 C -0.22 -4.53 10.86 22.14 0.24 -4.29 16 23 C -0.02 -0.39 11.39 83.21 0.95 0.56 16 24 H 0.06 0.73 7.92 -2.39 -0.02 0.71 16 25 H 0.10 0.51 7.56 -2.39 -0.02 0.49 16 26 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.42 4.65 7.89 -92.71 -0.73 3.92 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.38 19.49 7.67 -92.71 -0.71 18.78 16 35 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 36 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 37 H 0.14 2.80 8.06 -2.92 -0.02 2.78 16 38 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 39 H 0.19 2.12 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -74.41 332.44 2.36 -72.05 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: -0.40 Total: 26.16 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 6.16 Total: -5.66 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -5.38 Total: -122.05 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.05 Total: -18.21 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -74.41 2.36 -72.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156657504.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.621 kcal (2) G-P(sol) polarization free energy of solvation -74.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds