Wall clock time and date at job start Mon Mar 30 2020 19:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.47482 * 2 1 4 4 O 1.21283 * 119.99906 * 247.29856 * 3 2 1 5 5 N 1.34771 * 119.99808 * 67.01627 * 3 2 1 6 6 C 1.46508 * 119.99759 * 175.46169 * 5 3 2 7 7 C 1.52999 * 109.46891 * 185.04369 * 6 5 3 8 8 C 1.50699 * 115.55057 * 275.62082 * 7 6 5 9 9 H 1.08004 * 119.99816 * 114.69830 * 8 7 6 10 10 C 1.37878 * 120.00208 * 294.70744 * 8 7 6 11 11 N 1.31515 * 119.99819 * 352.27655 * 10 8 7 12 12 Si 1.86803 * 119.99909 * 172.27826 * 10 8 7 13 13 H 1.48496 * 109.47058 * 59.99704 * 12 10 8 14 14 H 1.48500 * 109.46862 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46958 * 299.99542 * 12 10 8 16 16 C 1.53002 * 117.49666 * 129.92031 * 7 6 5 17 17 C 1.52999 * 117.49997 * 61.29634 * 7 6 5 18 18 C 1.53004 * 109.47475 * 120.00005 * 2 1 3 19 19 C 1.52995 * 109.47475 * 180.02562 * 18 2 1 20 20 C 1.53006 * 109.46821 * 299.99731 * 19 18 2 21 21 C 1.52998 * 109.46947 * 60.00405 * 20 19 18 22 22 C 1.52996 * 109.47065 * 240.00007 * 2 1 3 23 23 H 1.09000 * 109.47154 * 64.83968 * 1 2 3 24 24 H 1.08998 * 109.47201 * 184.84526 * 1 2 3 25 25 H 1.09001 * 109.46738 * 304.84411 * 1 2 3 26 26 H 0.96998 * 120.00595 * 355.46245 * 5 3 2 27 27 H 1.08998 * 109.46962 * 305.04654 * 6 5 3 28 28 H 1.09004 * 109.46532 * 65.04360 * 6 5 3 29 29 H 0.97001 * 119.99719 * 185.00903 * 11 10 8 30 30 H 1.08997 * 117.49974 * 359.97438 * 16 7 6 31 31 H 1.08999 * 117.50071 * 145.01882 * 16 7 6 32 32 H 1.08994 * 117.49682 * 214.97586 * 17 7 6 33 33 H 1.09001 * 117.49496 * 359.97334 * 17 7 6 34 34 H 1.09003 * 109.46943 * 300.00209 * 18 2 1 35 35 H 1.09000 * 109.47002 * 59.99525 * 18 2 1 36 36 H 1.08994 * 109.47208 * 179.97438 * 19 18 2 37 37 H 1.09000 * 109.47393 * 59.99764 * 19 18 2 38 38 H 1.08990 * 109.47306 * 300.00063 * 20 19 18 39 39 H 1.08997 * 109.46853 * 179.97438 * 20 19 18 40 40 H 1.09004 * 109.46847 * 180.02562 * 21 20 19 41 41 H 1.09000 * 109.47378 * 59.99899 * 21 20 19 42 42 H 1.09004 * 109.47310 * 299.99579 * 22 2 1 43 43 H 1.08997 * 109.47777 * 59.99849 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.6167 1.8574 -0.9690 5 7 1.8274 2.2080 1.0745 6 6 2.4011 3.5555 1.1155 7 6 2.1285 4.1844 2.4834 8 6 0.7855 4.8506 2.6365 9 1 0.0606 4.4513 3.3305 10 6 0.4819 5.9697 1.8905 11 7 1.4121 6.5453 1.1604 12 14 -1.2504 6.6681 1.9169 13 1 -1.6070 7.0550 3.3055 14 1 -1.3155 7.8635 1.0382 15 1 -2.2056 5.6414 1.4283 16 6 3.3143 4.8057 3.2242 17 6 2.7145 3.4853 3.7118 18 6 2.0401 -0.7213 1.2492 19 6 3.5700 -0.7207 1.2496 20 6 4.0805 -1.4417 0.0003 21 6 3.5705 -0.7204 -1.2489 22 6 2.0399 -0.7212 -1.2492 23 1 -0.3633 0.4369 -0.9302 24 1 -0.3633 -1.0240 0.0868 25 1 -0.3633 0.5872 0.8434 26 1 1.3000 1.8826 1.8207 27 1 3.4769 3.4975 0.9501 28 1 1.9462 4.1678 0.3369 29 1 1.2187 7.3732 0.6933 30 1 4.2886 4.7661 2.7372 31 1 3.1232 5.6966 3.8224 32 1 2.1288 3.5076 4.6307 33 1 3.2938 2.5771 3.5453 34 1 1.6767 -0.2074 2.1393 35 1 1.6767 -1.7489 1.2493 36 1 3.9333 -1.2341 2.1397 37 1 3.9330 0.3071 1.2498 38 1 3.7175 -2.4694 0.0001 39 1 5.1704 -1.4409 0.0003 40 1 3.9338 -1.2343 -2.1389 41 1 3.9335 0.3074 -1.2487 42 1 1.6766 -1.7490 -1.2492 43 1 1.6766 -0.2075 -2.1392 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404071315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:20:22 Heat of formation + Delta-G solvation = -46.214502 kcal Electronic energy + Delta-G solvation = -21489.260821 eV Core-core repulsion = 18533.697703 eV Total energy + Delta-G solvation = -2955.563118 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.33359 -37.33831 -36.32577 -33.51903 -32.46039 -32.04385 -30.50510 -26.43981 -26.36888 -25.21047 -22.59178 -22.24195 -21.21001 -20.49690 -19.36973 -18.57039 -16.50124 -15.87090 -15.42904 -14.85169 -14.75077 -14.50665 -13.95705 -13.89853 -13.67396 -13.33150 -13.11018 -12.64797 -12.22812 -12.07907 -11.82673 -11.70844 -11.65744 -11.44759 -11.40256 -10.98565 -10.96124 -10.89886 -10.54621 -10.44756 -10.31083 -10.02170 -9.91142 -9.59061 -9.05528 -8.97346 -8.59765 -8.19979 -8.05227 -6.08723 -4.15588 3.26838 3.28965 3.33282 3.34375 3.90153 4.35019 4.69999 4.82181 4.85125 5.11330 5.18939 5.28469 5.34852 5.42151 5.49847 5.54762 5.62929 5.69936 5.75173 5.89672 5.92543 5.99366 6.07391 6.10486 6.14889 6.30571 6.32193 6.36862 6.37770 6.45277 6.46762 6.61305 6.64464 6.71227 6.94526 7.05681 7.30933 7.43289 7.52576 7.83586 8.34069 8.35322 8.83004 8.96975 9.49390 10.99010 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.024034 B = 0.005869 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.739905 B = 4769.371234 C = 5185.060144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 C 0.517 3.483 4 O -0.551 6.551 5 N -0.708 5.708 6 C 0.164 3.836 7 C 0.036 3.964 8 C -0.501 4.501 9 H 0.060 0.940 10 C 0.073 3.927 11 N -0.874 5.874 12 Si 0.891 3.109 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.276 1.276 16 C -0.166 4.166 17 C -0.208 4.208 18 C -0.105 4.105 19 C -0.123 4.123 20 C -0.117 4.117 21 C -0.131 4.131 22 C -0.089 4.089 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.396 0.604 27 H 0.037 0.963 28 H 0.079 0.921 29 H 0.263 0.737 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.087 0.913 42 H 0.061 0.939 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.033 -14.846 -0.364 14.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.084 4.084 3 C 0.302 3.698 4 O -0.430 6.430 5 N -0.356 5.356 6 C 0.041 3.959 7 C 0.035 3.965 8 C -0.538 4.538 9 H 0.078 0.922 10 C -0.131 4.131 11 N -0.510 5.510 12 Si 0.718 3.282 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.201 1.201 16 C -0.204 4.204 17 C -0.245 4.245 18 C -0.143 4.143 19 C -0.161 4.161 20 C -0.154 4.154 21 C -0.168 4.168 22 C -0.127 4.127 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.230 0.770 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.079 0.921 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.487 -14.367 -1.233 14.496 hybrid contribution -1.125 0.441 0.438 1.286 sum 0.361 -13.926 -0.795 13.953 Atomic orbital electron populations 1.21838 0.92840 1.02223 1.02924 1.20853 0.96676 0.93312 0.97591 1.20297 0.79630 0.87002 0.82838 1.90603 1.43232 1.75349 1.33860 1.46125 1.53433 1.16455 1.19628 1.20987 0.95206 0.80230 0.99474 1.19058 0.93887 0.96737 0.86769 1.20388 0.97834 1.12090 1.23512 0.92194 1.24982 0.96880 0.96621 0.94643 1.69955 1.32748 1.17741 1.30557 0.86685 0.85015 0.78508 0.77969 1.20267 1.21223 1.20128 1.22707 0.97363 0.95031 1.05328 1.22876 1.05884 0.95324 1.00442 1.21591 0.95970 1.00383 0.96312 1.21564 0.95371 1.01385 0.97763 1.21526 0.99913 0.98861 0.95116 1.21731 0.95521 1.02800 0.96769 1.21329 0.96058 0.98918 0.96388 0.92074 0.91889 0.91778 0.77031 0.94425 0.90256 0.92696 0.91723 0.90034 0.90451 0.91481 0.91399 0.91284 0.92006 0.91659 0.92518 0.92453 0.92660 0.89452 0.92077 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.45 37.16 0.31 -1.43 16 2 C -0.08 -1.12 0.64 -155.66 -0.10 -1.22 16 3 C 0.52 9.51 4.84 -10.99 -0.05 9.46 16 4 O -0.55 -12.12 13.97 5.56 0.08 -12.04 16 5 N -0.71 -13.56 5.23 -60.29 -0.32 -13.88 16 6 C 0.16 3.78 5.51 -4.04 -0.02 3.76 16 7 C 0.04 0.85 1.32 -155.66 -0.20 0.65 16 8 C -0.50 -12.99 8.82 -34.44 -0.30 -13.29 16 9 H 0.06 1.53 7.83 -52.48 -0.41 1.12 16 10 C 0.07 1.95 5.23 -17.82 -0.09 1.85 16 11 N -0.87 -24.46 12.60 55.43 0.70 -23.76 16 12 Si 0.89 20.70 29.55 -169.99 -5.02 15.68 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 C -0.17 -3.74 9.88 -26.73 -0.26 -4.01 16 17 C -0.21 -4.21 9.78 -26.73 -0.26 -4.48 16 18 C -0.10 -1.24 4.58 -26.73 -0.12 -1.37 16 19 C -0.12 -1.53 5.70 -26.73 -0.15 -1.68 16 20 C -0.12 -1.37 5.92 -26.73 -0.16 -1.52 16 21 C -0.13 -1.77 5.63 -26.70 -0.15 -1.92 16 22 C -0.09 -1.18 4.36 -26.70 -0.12 -1.29 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.81 7.82 -51.93 -0.41 0.40 16 26 H 0.40 6.91 7.26 -40.82 -0.30 6.61 16 27 H 0.04 0.88 7.91 -51.93 -0.41 0.47 16 28 H 0.08 2.14 7.26 -51.93 -0.38 1.76 16 29 H 0.26 7.10 8.32 -40.82 -0.34 6.76 16 30 H 0.06 1.40 8.06 -51.93 -0.42 0.98 16 31 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.07 0.79 7.29 -51.93 -0.38 0.41 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.98 7.22 -51.93 -0.37 0.60 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.48 5.78 -51.93 -0.30 1.17 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.97 8.02 -51.93 -0.42 0.56 16 LS Contribution 335.65 15.07 5.06 5.06 Total: -1.00 -28.63 335.65 -8.77 -37.40 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -7.58 Total: 8.05 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -1.69 Total: -16.50 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.38 Total: -37.64 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.08 Total: -12.04 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.63 -8.77 -37.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404071315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.819 kcal (2) G-P(sol) polarization free energy of solvation -28.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds