Wall clock time and date at job start Mon Mar 30 2020 19:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.47482 * 2 1 4 4 O 1.21283 * 119.99906 * 247.29856 * 3 2 1 5 5 N 1.34771 * 119.99808 * 67.01627 * 3 2 1 6 6 C 1.46508 * 119.99759 * 175.46169 * 5 3 2 7 7 C 1.52999 * 109.46891 * 185.04369 * 6 5 3 8 8 C 1.50699 * 115.55057 * 275.62082 * 7 6 5 9 9 H 1.08004 * 119.99816 * 114.69830 * 8 7 6 10 10 C 1.37878 * 120.00208 * 294.70744 * 8 7 6 11 11 N 1.31515 * 119.99819 * 352.27655 * 10 8 7 12 12 Si 1.86803 * 119.99909 * 172.27826 * 10 8 7 13 13 H 1.48496 * 109.47058 * 59.99704 * 12 10 8 14 14 H 1.48500 * 109.46862 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46958 * 299.99542 * 12 10 8 16 16 C 1.53002 * 117.49666 * 129.92031 * 7 6 5 17 17 C 1.52999 * 117.49997 * 61.29634 * 7 6 5 18 18 C 1.53004 * 109.47475 * 120.00005 * 2 1 3 19 19 C 1.52995 * 109.47475 * 180.02562 * 18 2 1 20 20 C 1.53006 * 109.46821 * 299.99731 * 19 18 2 21 21 C 1.52998 * 109.46947 * 60.00405 * 20 19 18 22 22 C 1.52996 * 109.47065 * 240.00007 * 2 1 3 23 23 H 1.09000 * 109.47154 * 64.83968 * 1 2 3 24 24 H 1.08998 * 109.47201 * 184.84526 * 1 2 3 25 25 H 1.09001 * 109.46738 * 304.84411 * 1 2 3 26 26 H 0.96998 * 120.00595 * 355.46245 * 5 3 2 27 27 H 1.08998 * 109.46962 * 305.04654 * 6 5 3 28 28 H 1.09004 * 109.46532 * 65.04360 * 6 5 3 29 29 H 0.97001 * 119.99719 * 185.00903 * 11 10 8 30 30 H 1.08997 * 117.49974 * 359.97438 * 16 7 6 31 31 H 1.08999 * 117.50071 * 145.01882 * 16 7 6 32 32 H 1.08994 * 117.49682 * 214.97586 * 17 7 6 33 33 H 1.09001 * 117.49496 * 359.97334 * 17 7 6 34 34 H 1.09003 * 109.46943 * 300.00209 * 18 2 1 35 35 H 1.09000 * 109.47002 * 59.99525 * 18 2 1 36 36 H 1.08994 * 109.47208 * 179.97438 * 19 18 2 37 37 H 1.09000 * 109.47393 * 59.99764 * 19 18 2 38 38 H 1.08990 * 109.47306 * 300.00063 * 20 19 18 39 39 H 1.08997 * 109.46853 * 179.97438 * 20 19 18 40 40 H 1.09004 * 109.46847 * 180.02562 * 21 20 19 41 41 H 1.09000 * 109.47378 * 59.99899 * 21 20 19 42 42 H 1.09004 * 109.47310 * 299.99579 * 22 2 1 43 43 H 1.08997 * 109.47777 * 59.99849 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.6167 1.8574 -0.9690 5 7 1.8274 2.2080 1.0745 6 6 2.4011 3.5555 1.1155 7 6 2.1285 4.1844 2.4834 8 6 0.7855 4.8506 2.6365 9 1 0.0606 4.4513 3.3305 10 6 0.4819 5.9697 1.8905 11 7 1.4121 6.5453 1.1604 12 14 -1.2504 6.6681 1.9169 13 1 -1.6070 7.0550 3.3055 14 1 -1.3155 7.8635 1.0382 15 1 -2.2056 5.6414 1.4283 16 6 3.3143 4.8057 3.2242 17 6 2.7145 3.4853 3.7118 18 6 2.0401 -0.7213 1.2492 19 6 3.5700 -0.7207 1.2496 20 6 4.0805 -1.4417 0.0003 21 6 3.5705 -0.7204 -1.2489 22 6 2.0399 -0.7212 -1.2492 23 1 -0.3633 0.4369 -0.9302 24 1 -0.3633 -1.0240 0.0868 25 1 -0.3633 0.5872 0.8434 26 1 1.3000 1.8826 1.8207 27 1 3.4769 3.4975 0.9501 28 1 1.9462 4.1678 0.3369 29 1 1.2187 7.3732 0.6933 30 1 4.2886 4.7661 2.7372 31 1 3.1232 5.6966 3.8224 32 1 2.1288 3.5076 4.6307 33 1 3.2938 2.5771 3.5453 34 1 1.6767 -0.2074 2.1393 35 1 1.6767 -1.7489 1.2493 36 1 3.9333 -1.2341 2.1397 37 1 3.9330 0.3071 1.2498 38 1 3.7175 -2.4694 0.0001 39 1 5.1704 -1.4409 0.0003 40 1 3.9338 -1.2343 -2.1389 41 1 3.9335 0.3074 -1.2487 42 1 1.6766 -1.7490 -1.2492 43 1 1.6766 -0.2075 -2.1392 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404071315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:20:21 Heat of formation + Delta-G solvation = -62.213329 kcal Electronic energy + Delta-G solvation = -21489.954582 eV Core-core repulsion = 18533.697703 eV Total energy + Delta-G solvation = -2956.256879 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.64441 -38.91484 -37.84776 -35.07235 -34.08059 -33.57035 -31.53915 -28.24180 -27.33563 -27.13987 -23.73746 -23.46429 -22.91595 -21.57941 -21.20076 -20.06782 -18.19859 -17.34043 -16.86017 -16.65802 -16.22393 -15.84229 -15.49606 -15.18270 -14.94355 -14.61060 -14.34056 -14.21952 -13.66467 -13.46704 -13.10802 -13.04449 -12.94613 -12.88760 -12.79807 -12.67807 -12.42264 -12.39165 -12.07176 -11.91079 -11.56069 -11.40765 -11.00585 -10.95821 -10.89158 -10.52931 -10.52360 -10.00031 -9.78291 -8.12572 -6.24150 1.41089 1.43405 1.49719 1.83112 2.39538 2.43193 3.13015 3.50382 3.66981 3.75646 3.85022 4.11313 4.22162 4.30688 4.32193 4.47119 4.54421 4.55543 4.62803 4.66455 4.75526 4.78784 4.83806 4.89024 4.94746 4.97760 5.05036 5.12393 5.15323 5.20963 5.24048 5.33441 5.38243 5.41233 5.45268 5.55790 5.56753 5.64042 5.74430 5.81768 6.35157 6.78216 6.86985 7.43729 7.47604 8.94887 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.024034 B = 0.005869 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.739905 B = 4769.371234 C = 5185.060144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.074 4.074 3 C 0.511 3.489 4 O -0.594 6.594 5 N -0.702 5.702 6 C 0.184 3.816 7 C 0.011 3.989 8 C -0.507 4.507 9 H 0.063 0.937 10 C 0.023 3.977 11 N -0.909 5.909 12 Si 0.949 3.051 13 H -0.267 1.267 14 H -0.291 1.291 15 H -0.271 1.271 16 C -0.178 4.178 17 C -0.169 4.169 18 C -0.101 4.101 19 C -0.125 4.125 20 C -0.112 4.112 21 C -0.133 4.133 22 C -0.088 4.088 23 H 0.046 0.954 24 H 0.099 0.901 25 H 0.060 0.940 26 H 0.406 0.594 27 H 0.023 0.977 28 H 0.032 0.968 29 H 0.259 0.741 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.028 0.972 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.043 0.957 42 H 0.098 0.902 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.174 -17.990 1.082 18.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 C 0.299 3.701 4 O -0.476 6.476 5 N -0.352 5.352 6 C 0.059 3.941 7 C 0.010 3.990 8 C -0.544 4.544 9 H 0.082 0.918 10 C -0.177 4.177 11 N -0.546 5.546 12 Si 0.775 3.225 13 H -0.192 1.192 14 H -0.217 1.217 15 H -0.196 1.196 16 C -0.217 4.217 17 C -0.206 4.206 18 C -0.139 4.139 19 C -0.163 4.163 20 C -0.149 4.149 21 C -0.170 4.170 22 C -0.126 4.126 23 H 0.065 0.935 24 H 0.118 0.882 25 H 0.079 0.921 26 H 0.242 0.758 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.102 0.898 37 H 0.047 0.953 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.116 0.884 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.261 -17.538 0.244 17.541 hybrid contribution -0.691 1.414 -0.045 1.575 sum -0.430 -16.123 0.199 16.130 Atomic orbital electron populations 1.21872 0.91355 1.04404 1.02059 1.20917 0.97689 0.89727 0.99391 1.21318 0.78389 0.88820 0.81539 1.90590 1.44942 1.76639 1.35384 1.45982 1.53594 1.15051 1.20556 1.20436 0.93934 0.81661 0.98025 1.19042 0.93438 0.98522 0.87982 1.20726 0.98881 1.11844 1.22960 0.91844 1.25721 1.00117 0.97334 0.94572 1.70092 1.34626 1.18107 1.31806 0.85746 0.80930 0.77627 0.78172 1.19217 1.21705 1.19609 1.22665 0.97256 0.96065 1.05683 1.22877 1.04019 0.94755 0.98926 1.21644 0.95361 1.01993 0.94882 1.21587 0.95981 0.99601 0.99089 1.21512 1.00071 0.99833 0.93507 1.21694 0.96020 1.00667 0.98641 1.21372 0.95671 1.00481 0.95091 0.93503 0.88187 0.92134 0.75768 0.95863 0.94981 0.93156 0.91479 0.91485 0.89234 0.89132 0.91039 0.87754 0.89842 0.95291 0.89636 0.92370 0.91507 0.93814 0.88397 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.45 71.98 0.61 -2.49 16 2 C -0.07 -1.91 0.64 -52.93 -0.03 -1.95 16 3 C 0.51 19.12 4.84 87.66 0.42 19.55 16 4 O -0.59 -27.55 13.97 -3.04 -0.04 -27.59 16 5 N -0.70 -27.20 5.23 -463.04 -2.42 -29.63 16 6 C 0.18 8.83 5.51 86.38 0.48 9.30 16 7 C 0.01 0.52 1.32 -52.93 -0.07 0.45 16 8 C -0.51 -26.36 8.82 25.60 0.23 -26.13 16 9 H 0.06 3.18 7.83 -2.91 -0.02 3.16 16 10 C 0.02 1.26 5.23 84.65 0.44 1.70 16 11 N -0.91 -52.66 12.60 21.45 0.27 -52.39 16 12 Si 0.95 42.84 29.55 68.60 2.03 44.86 16 13 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 14 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 15 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 16 C -0.18 -8.11 9.88 30.60 0.30 -7.80 16 17 C -0.17 -6.56 9.78 30.60 0.30 -6.26 16 18 C -0.10 -2.02 4.58 30.59 0.14 -1.88 16 19 C -0.13 -2.78 5.70 30.59 0.17 -2.60 16 20 C -0.11 -2.32 5.92 30.60 0.18 -2.13 16 21 C -0.13 -3.47 5.63 30.61 0.17 -3.30 16 22 C -0.09 -2.16 4.36 30.61 0.13 -2.03 16 23 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 24 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.06 1.39 7.82 -2.39 -0.02 1.37 16 26 H 0.41 13.80 7.26 -92.71 -0.67 13.13 16 27 H 0.02 1.15 7.91 -2.39 -0.02 1.13 16 28 H 0.03 1.83 7.26 -2.38 -0.02 1.81 16 29 H 0.26 14.55 8.32 -92.71 -0.77 13.77 16 30 H 0.07 2.96 8.06 -2.39 -0.02 2.95 16 31 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 32 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 33 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 34 H 0.07 1.40 7.29 -2.39 -0.02 1.38 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.03 0.84 7.22 -2.39 -0.02 0.83 16 38 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 41 H 0.04 1.53 5.78 -2.39 -0.01 1.52 16 42 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.05 1.31 8.02 -2.39 -0.02 1.29 16 Total: -1.00 -65.39 335.65 3.61 -61.78 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.30 Total: 28.54 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: 3.48 Total: -25.58 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -2.15 Total: -82.02 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.04 Total: -27.59 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -65.39 3.61 -61.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404071315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.428 kcal (2) G-P(sol) polarization free energy of solvation -65.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds