Wall clock time and date at job start Mon Mar 30 2020 19:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99601 * 2 1 4 4 H 1.48506 * 109.46989 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46903 * 299.99643 * 3 2 1 6 6 H 1.48498 * 109.47416 * 60.00058 * 3 2 1 7 7 C 1.37871 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 H 1.09004 * 115.54903 * 330.58062 * 15 14 13 17 17 C 1.53000 * 117.50190 * 116.25221 * 15 14 13 18 18 C 1.53005 * 117.50034 * 184.91144 * 15 14 13 19 19 H 1.08995 * 117.49434 * 0.02562 * 18 15 14 20 20 C 1.53002 * 117.49720 * 145.01672 * 18 15 14 21 21 C 1.54268 * 110.03443 * 297.16811 * 20 18 15 22 22 C 1.54888 * 104.19356 * 217.10687 * 21 20 18 23 23 C 1.54888 * 102.75059 * 37.94267 * 22 21 20 24 24 C 1.53875 * 110.02866 * 179.97438 * 20 18 15 25 25 H 0.96991 * 119.99897 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 27 27 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 28 28 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 29 29 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 30 30 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 31 31 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 32 32 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 33 33 H 1.09000 * 117.49604 * 214.97994 * 17 15 14 34 34 H 1.08998 * 117.49975 * 359.97217 * 17 15 14 35 35 H 1.08999 * 110.01847 * 58.61257 * 20 18 15 36 36 H 1.08999 * 110.48610 * 335.78467 * 21 20 18 37 37 H 1.08992 * 110.48257 * 98.43111 * 21 20 18 38 38 H 1.08997 * 110.75822 * 279.62790 * 22 21 20 39 39 H 1.08995 * 110.75798 * 156.25801 * 22 21 20 40 40 H 1.09006 * 110.48923 * 203.37810 * 23 22 21 41 41 H 1.08998 * 110.49143 * 80.73475 * 23 22 21 42 42 H 1.09004 * 110.03069 * 238.57134 * 24 20 18 43 43 H 1.09003 * 110.03284 * 359.95478 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1659 -6.1344 -0.0008 14 6 1.4334 -7.4031 -0.0075 15 6 2.4277 -8.5659 -0.0125 16 1 3.3846 -8.3642 -0.4939 17 6 2.4296 -9.4990 1.2001 18 6 1.8591 -9.9810 -0.1360 19 1 0.7768 -10.0834 -0.2142 20 6 2.6776 -11.0047 -0.9254 21 6 2.8067 -10.5573 -2.3961 22 6 2.7244 -11.8768 -3.2031 23 6 1.6645 -12.6909 -2.4202 24 6 1.9517 -12.3614 -0.9401 25 1 -0.4849 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8898 28 1 2.8721 -3.6043 0.8894 29 1 2.8721 -3.6043 -0.8905 30 1 3.1359 -6.1343 -0.0004 31 1 0.8061 -7.4652 0.8818 32 1 0.8074 -7.4565 -0.8982 33 1 3.3878 -9.9113 1.5162 34 1 1.7229 -9.2841 2.0016 35 1 3.6662 -11.1155 -0.4799 36 1 1.9857 -9.8931 -2.6663 37 1 3.7659 -10.0673 -2.5629 38 1 3.6853 -12.3913 -3.2013 39 1 2.3893 -11.6859 -4.2225 40 1 1.7902 -13.7578 -2.6046 41 1 0.6591 -12.3713 -2.6942 42 1 2.5885 -13.1304 -0.5028 43 1 1.0167 -12.2907 -0.3843 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355152241.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:18:07 Heat of formation + Delta-G solvation = -52.772941 kcal Electronic energy + Delta-G solvation = -19295.590871 eV Core-core repulsion = 16339.743358 eV Total energy + Delta-G solvation = -2955.847513 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.63371 -38.83782 -36.69429 -33.83803 -33.40757 -30.98813 -29.23349 -28.92916 -27.06341 -25.06750 -22.29019 -21.63612 -21.24353 -20.62187 -19.89234 -19.33307 -16.86107 -16.25292 -16.07961 -15.54166 -15.19418 -15.11380 -14.39969 -14.27501 -14.02030 -13.62690 -13.47973 -12.95574 -12.62823 -12.16671 -12.05307 -11.77410 -11.56354 -11.49669 -11.37262 -11.31064 -11.12506 -10.93495 -10.92516 -10.75816 -10.56430 -10.15183 -10.04899 -9.92821 -9.63436 -9.12951 -8.95302 -8.69216 -8.29967 -5.94043 -3.98274 3.29950 3.33929 3.36592 3.41070 3.44436 3.71590 4.24513 4.30796 4.37105 4.49444 4.67546 4.72258 4.81110 5.09075 5.13739 5.18847 5.24072 5.33507 5.40493 5.40846 5.44773 5.49359 5.59481 5.62409 5.64259 5.75127 5.79576 5.83422 5.94775 5.98374 6.03378 6.09017 6.18326 6.27060 6.28672 6.79798 6.93568 7.77307 7.89569 7.95388 8.10040 8.41486 8.83851 9.10849 9.65157 11.17015 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.044141 B = 0.002612 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.177527 B =10716.836320 C =10841.445507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.508 3.492 12 O -0.537 6.537 13 N -0.742 5.742 14 C 0.151 3.849 15 C -0.159 4.159 16 H 0.109 0.891 17 C -0.173 4.173 18 C -0.134 4.134 19 H 0.106 0.894 20 C -0.061 4.061 21 C -0.118 4.118 22 C -0.127 4.127 23 C -0.126 4.126 24 C -0.118 4.118 25 H 0.260 0.740 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.397 0.603 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.880 -26.150 -2.350 27.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.297 3.703 12 O -0.412 6.412 13 N -0.396 5.396 14 C 0.027 3.973 15 C -0.178 4.178 16 H 0.127 0.873 17 C -0.210 4.210 18 C -0.153 4.153 19 H 0.124 0.876 20 C -0.080 4.080 21 C -0.156 4.156 22 C -0.164 4.164 23 C -0.164 4.164 24 C -0.156 4.156 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.231 0.769 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.816 -26.021 -2.340 27.000 hybrid contribution 0.934 0.896 0.060 1.295 sum 7.750 -25.125 -2.280 26.392 Atomic orbital electron populations 1.70014 1.06049 1.26438 1.50378 1.25037 0.94835 0.99250 0.95367 0.86533 0.79992 0.83845 0.77565 1.19761 1.21030 1.21029 1.21269 0.92964 0.91026 1.51126 0.92557 1.18904 0.93211 0.89415 0.98616 1.21855 1.00687 0.91986 1.02436 1.21563 0.88650 0.85681 0.74440 1.90667 1.14519 1.87701 1.48338 1.46185 1.10022 1.05479 1.77933 1.20765 0.93168 0.81506 1.01896 1.22539 1.01048 0.90989 1.03213 0.87328 1.23242 1.02769 1.03401 0.91553 1.22540 0.99524 0.94120 0.99110 0.87550 1.21374 0.98000 0.93410 0.95176 1.22409 1.02023 0.97292 0.93876 1.22504 0.98983 0.96166 0.98791 1.22383 0.99274 0.99629 0.95065 1.22205 1.00461 0.96227 0.96701 0.93025 0.95821 0.95843 0.90281 0.90295 0.76935 0.91844 0.91628 0.88795 0.88597 0.91102 0.91060 0.91792 0.91716 0.91643 0.91947 0.91614 0.91990 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.77 13.29 55.43 0.74 -27.04 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.53 -15.11 9.11 -34.44 -0.31 -15.43 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.99 4.26 -27.89 -0.12 0.87 16 10 C -0.13 -2.69 5.64 -27.89 -0.16 -2.84 16 11 C 0.51 10.06 7.83 -10.98 -0.09 9.98 16 12 O -0.54 -13.06 15.98 5.55 0.09 -12.97 16 13 N -0.74 -10.71 5.56 -60.30 -0.33 -11.04 16 14 C 0.15 1.93 5.96 -4.04 -0.02 1.91 16 15 C -0.16 -1.48 5.30 -90.62 -0.48 -1.96 16 16 H 0.11 0.94 8.04 -51.93 -0.42 0.52 16 17 C -0.17 -1.44 9.83 -26.69 -0.26 -1.70 16 18 C -0.13 -1.11 4.56 -90.58 -0.41 -1.52 16 19 H 0.11 0.92 7.93 -51.93 -0.41 0.51 16 20 C -0.06 -0.45 3.08 -89.50 -0.28 -0.72 16 21 C -0.12 -0.89 6.12 -25.07 -0.15 -1.05 16 22 C -0.13 -0.86 6.91 -24.74 -0.17 -1.03 16 23 C -0.13 -0.83 6.83 -25.04 -0.17 -1.00 16 24 C -0.12 -0.80 6.46 -25.58 -0.17 -0.97 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.02 0.71 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.70 8.10 -51.92 -0.42 0.28 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 30 H 0.40 4.50 8.40 -40.82 -0.34 4.16 16 31 H 0.06 0.88 7.88 -51.93 -0.41 0.47 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.70 8.07 -51.93 -0.42 0.28 16 34 H 0.10 0.83 8.03 -51.93 -0.42 0.42 16 35 H 0.07 0.51 7.94 -51.93 -0.41 0.10 16 36 H 0.07 0.61 7.85 -51.93 -0.41 0.20 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.46 7.54 -51.93 -0.39 0.07 16 LS Contribution 350.23 15.07 5.28 5.28 Total: -1.00 -33.64 350.23 -9.96 -43.60 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -7.82 Total: -0.79 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -2.89 Total: -13.90 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.40 Total: -38.08 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.97 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.64 -9.96 -43.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355152241.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.170 kcal (2) G-P(sol) polarization free energy of solvation -33.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds