Wall clock time and date at job start Mon Mar 30 2020 19:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 120.00119 * 2 1 4 4 H 1.48492 * 109.47583 * 270.00517 * 3 2 1 5 5 H 1.48502 * 109.47155 * 30.00738 * 3 2 1 6 6 H 1.48504 * 109.47089 * 150.00277 * 3 2 1 7 7 C 1.37881 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00401 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99636 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46913 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46913 * 179.97438 * 10 9 7 12 12 O 1.21288 * 120.00258 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99883 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99892 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46921 * 180.02562 * 14 13 11 16 16 H 1.09002 * 115.56020 * 330.69849 * 15 14 13 17 17 C 1.53000 * 117.49776 * 116.39266 * 15 14 13 18 18 C 1.52997 * 117.49537 * 185.01720 * 15 14 13 19 19 H 1.09001 * 117.51673 * 145.03083 * 18 15 14 20 20 C 1.52993 * 117.50138 * 359.97438 * 18 15 14 21 21 C 1.54270 * 110.03180 * 177.89774 * 20 18 15 22 22 C 1.54976 * 104.15773 * 217.13798 * 21 20 18 23 23 C 1.54889 * 102.77505 * 37.88949 * 22 21 20 24 24 C 1.53877 * 110.03140 * 60.68095 * 20 18 15 25 25 H 0.97000 * 120.00142 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47233 * 59.99433 * 9 7 2 27 27 H 1.08999 * 109.46910 * 299.99445 * 9 7 2 28 28 H 1.08997 * 109.46862 * 59.99554 * 10 9 7 29 29 H 1.08999 * 109.46972 * 299.99520 * 10 9 7 30 30 H 0.96996 * 120.00045 * 0.02562 * 13 11 10 31 31 H 1.09002 * 109.46925 * 59.99984 * 14 13 11 32 32 H 1.08999 * 109.47209 * 300.00000 * 14 13 11 33 33 H 1.08990 * 117.49990 * 359.97438 * 17 15 14 34 34 H 1.09004 * 117.49237 * 214.97568 * 17 15 14 35 35 H 1.08999 * 110.02097 * 299.28858 * 20 18 15 36 36 H 1.09000 * 110.48599 * 335.78152 * 21 20 18 37 37 H 1.08997 * 110.48936 * 98.43361 * 21 20 18 38 38 H 1.09000 * 110.71627 * 279.57121 * 22 21 20 39 39 H 1.08998 * 110.75965 * 156.22279 * 22 21 20 40 40 H 1.09003 * 110.48387 * 203.40472 * 23 22 21 41 41 H 1.08995 * 110.49106 * 80.76141 * 23 22 21 42 42 H 1.09002 * 110.03082 * 238.56813 * 24 20 18 43 43 H 1.08996 * 110.02992 * 359.95004 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5284 -2.6367 -0.0022 12 8 6.1349 -1.5863 -0.0036 13 7 6.2023 -3.8039 -0.0018 14 6 7.6673 -3.8039 -0.0036 15 6 8.1773 -5.2465 -0.0033 16 1 7.5261 -5.9754 0.4792 17 6 8.9801 -5.7122 -1.2197 18 6 9.6875 -5.4618 0.1137 19 1 10.0302 -6.3324 0.6728 20 6 10.5722 -4.2182 0.2209 21 6 12.0493 -4.6328 0.3830 22 6 12.6307 -3.5870 1.3678 23 6 11.4636 -3.3670 2.3621 24 6 10.1999 -3.4133 1.4785 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6804 0.8888 27 1 3.8744 -0.6802 -0.8912 28 1 3.6577 -3.1507 -0.8907 29 1 3.6585 -3.1503 0.8893 30 1 5.7173 -4.6439 -0.0011 31 1 8.0317 -3.2891 0.8855 32 1 8.0296 -3.2910 -0.8945 33 1 9.1445 -4.9911 -2.0202 34 1 8.8570 -6.7476 -1.5374 35 1 10.4538 -3.5983 -0.6678 36 1 12.1200 -5.6351 0.8055 37 1 12.5665 -4.5843 -0.5753 38 1 12.8746 -2.6610 0.8472 39 1 13.5059 -3.9848 1.8814 40 1 11.5542 -2.3952 2.8476 41 1 11.4394 -4.1646 3.1046 42 1 9.9017 -2.4025 1.2001 43 1 9.3884 -3.9083 2.0118 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355152242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:18:09 Heat of formation + Delta-G solvation = -46.027651 kcal Electronic energy + Delta-G solvation = -19782.818849 eV Core-core repulsion = 16827.263834 eV Total energy + Delta-G solvation = -2955.555015 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.89846 -38.88026 -36.58437 -33.92628 -33.44022 -31.27220 -29.17230 -28.86955 -27.50655 -25.32055 -22.26661 -21.39185 -21.20732 -20.76437 -19.85329 -19.08245 -17.13159 -16.48656 -16.06325 -15.79284 -15.35987 -14.87956 -14.71514 -14.11139 -13.90677 -13.64014 -13.44800 -13.03708 -12.55471 -12.49069 -12.27850 -11.99101 -11.63329 -11.38857 -11.38362 -11.31837 -11.14691 -10.93973 -10.92549 -10.60541 -10.18465 -10.13185 -10.08459 -10.01358 -9.75610 -9.19481 -9.12253 -8.75427 -8.48526 -6.01100 -3.99600 3.17310 3.31474 3.39669 3.46034 3.57443 3.65812 4.22749 4.33947 4.37818 4.52979 4.67486 4.70612 4.79149 5.06299 5.16931 5.23112 5.26003 5.34474 5.36061 5.39879 5.47076 5.48411 5.55803 5.61930 5.68056 5.71638 5.78371 5.85804 5.94403 6.03091 6.04865 6.12046 6.12807 6.13900 6.19557 6.69263 6.74234 7.39669 7.46744 7.79783 7.85409 8.52704 8.71014 9.02231 9.62125 11.11793 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.031238 B = 0.003330 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.136070 B = 8407.294955 C = 9029.413637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.001 3.999 10 C -0.122 4.122 11 C 0.509 3.491 12 O -0.543 6.543 13 N -0.740 5.740 14 C 0.143 3.857 15 C -0.163 4.163 16 H 0.109 0.891 17 C -0.173 4.173 18 C -0.132 4.132 19 H 0.106 0.894 20 C -0.065 4.065 21 C -0.116 4.116 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.124 4.124 25 H 0.263 0.737 26 H 0.023 0.977 27 H 0.019 0.981 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.398 0.602 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.237 -13.685 1.350 27.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.162 4.162 11 C 0.297 3.703 12 O -0.419 6.419 13 N -0.394 5.394 14 C 0.020 3.980 15 C -0.181 4.181 16 H 0.127 0.873 17 C -0.210 4.210 18 C -0.150 4.150 19 H 0.124 0.876 20 C -0.083 4.083 21 C -0.153 4.153 22 C -0.164 4.164 23 C -0.163 4.163 24 C -0.161 4.161 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.232 0.768 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 24.519 -12.778 1.349 27.682 hybrid contribution 0.045 0.328 -0.083 0.341 sum 24.564 -12.450 1.265 27.568 Atomic orbital electron populations 1.69915 1.06295 1.26946 1.51174 1.24978 0.94715 0.99248 0.94358 0.86788 0.80621 0.83364 0.78740 1.20252 1.21455 1.18523 1.21128 0.89325 0.94550 1.51222 0.90950 1.19366 0.96352 0.90287 0.97637 1.21662 0.88066 1.03211 1.03282 1.21526 0.91569 0.82798 0.74398 1.90648 1.70871 1.31508 1.48874 1.46177 1.06488 1.09214 1.77539 1.21036 0.80737 0.93826 1.02443 1.22546 0.94496 0.97698 1.03402 0.87281 1.23218 1.03914 1.02320 0.91564 1.22512 0.92326 0.99565 1.00613 0.87622 1.21394 0.93902 0.94336 0.98663 1.22425 0.94693 0.98952 0.99259 1.22526 0.97684 0.99119 0.97108 1.22373 0.94699 1.01505 0.97718 1.22356 0.97847 1.00334 0.95579 0.92742 0.95841 0.96301 0.89681 0.89642 0.76806 0.90531 0.91957 0.88584 0.88761 0.90819 0.91525 0.91801 0.91556 0.91796 0.91778 0.91795 0.91391 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.29 13.96 55.43 0.77 -27.52 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.86 27.47 -169.99 -4.67 18.19 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.26 -6.77 6.54 56.52 0.37 -6.40 16 7 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 10 C -0.12 -2.41 5.64 -27.88 -0.16 -2.57 16 11 C 0.51 9.48 7.83 -10.99 -0.09 9.39 16 12 O -0.54 -12.30 15.98 5.55 0.09 -12.21 16 13 N -0.74 -10.14 5.56 -60.29 -0.33 -10.47 16 14 C 0.14 1.74 4.87 -4.04 -0.02 1.72 16 15 C -0.16 -1.45 5.54 -90.62 -0.50 -1.96 16 16 H 0.11 0.88 8.04 -51.93 -0.42 0.46 16 17 C -0.17 -1.39 9.83 -26.73 -0.26 -1.65 16 18 C -0.13 -1.04 4.99 -90.62 -0.45 -1.49 16 19 H 0.11 0.75 7.81 -51.93 -0.41 0.35 16 20 C -0.06 -0.54 2.54 -89.50 -0.23 -0.76 16 21 C -0.12 -0.83 6.37 -25.02 -0.16 -0.99 16 22 C -0.13 -0.91 6.91 -24.69 -0.17 -1.09 16 23 C -0.13 -1.01 6.83 -25.07 -0.17 -1.18 16 24 C -0.12 -1.14 4.54 -25.61 -0.12 -1.26 16 25 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 26 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 27 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 28 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 29 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.40 4.28 8.40 -40.82 -0.34 3.94 16 31 H 0.08 1.00 5.10 -51.93 -0.26 0.73 16 32 H 0.06 0.84 7.87 -51.93 -0.41 0.43 16 33 H 0.10 0.82 7.95 -51.93 -0.41 0.41 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.68 7.93 -51.93 -0.41 0.26 16 36 H 0.07 0.44 7.64 -51.93 -0.40 0.05 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.72 7.86 -51.93 -0.41 0.31 16 43 H 0.07 0.69 6.45 -51.93 -0.33 0.35 16 LS Contribution 339.23 15.07 5.11 5.11 Total: -1.00 -33.53 339.23 -9.41 -42.94 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.53 Total: -0.57 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -2.85 Total: -15.47 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.44 Total: -37.99 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.09 Total: -12.21 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.67 Total: 18.19 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.53 -9.41 -42.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355152242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.088 kcal (2) G-P(sol) polarization free energy of solvation -33.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds