Wall clock time and date at job start Mon Mar 30 2020 19:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00034 * 2 1 4 4 H 1.48498 * 109.47201 * 269.99978 * 3 2 1 5 5 H 1.48500 * 109.47292 * 29.99901 * 3 2 1 6 6 H 1.48500 * 109.47078 * 150.00434 * 3 2 1 7 7 C 1.37877 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00178 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00246 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47159 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46898 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00060 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99765 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00024 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47488 * 179.97438 * 14 13 11 16 16 H 1.09000 * 115.55766 * 29.29320 * 15 14 13 17 17 C 1.53002 * 117.49773 * 243.61004 * 15 14 13 18 18 C 1.53000 * 60.02940 * 252.51785 * 17 15 14 19 19 H 1.09007 * 117.49605 * 107.50099 * 18 17 15 20 20 C 1.52996 * 117.49997 * 252.49592 * 18 17 15 21 21 C 1.54269 * 110.03404 * 246.51746 * 20 18 17 22 22 C 1.54964 * 104.15738 * 217.13890 * 21 20 18 23 23 C 1.54888 * 102.78216 * 37.88923 * 22 21 20 24 24 C 1.53876 * 110.03005 * 129.29945 * 20 18 17 25 25 H 0.96998 * 119.99432 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47181 * 59.99642 * 9 7 2 27 27 H 1.09002 * 109.46734 * 299.99580 * 9 7 2 28 28 H 1.09005 * 109.47190 * 60.00007 * 10 9 7 29 29 H 1.08996 * 109.47315 * 299.99878 * 10 9 7 30 30 H 0.97005 * 120.00104 * 359.97438 * 13 11 10 31 31 H 1.09007 * 109.47402 * 60.00039 * 14 13 11 32 32 H 1.08996 * 109.47082 * 300.00185 * 14 13 11 33 33 H 1.09002 * 117.49918 * 145.01819 * 17 15 14 34 34 H 1.09002 * 117.49754 * 0.02562 * 17 15 14 35 35 H 1.09002 * 110.01728 * 7.91257 * 20 18 17 36 36 H 1.08992 * 110.48329 * 335.78698 * 21 20 18 37 37 H 1.08994 * 110.48558 * 98.43011 * 21 20 18 38 38 H 1.09009 * 110.72067 * 279.56991 * 22 21 20 39 39 H 1.09000 * 110.76419 * 156.22980 * 22 21 20 40 40 H 1.09003 * 110.48611 * 203.40818 * 23 22 21 41 41 H 1.08997 * 110.59750 * 80.81205 * 23 22 21 42 42 H 1.09002 * 110.03474 * 238.56712 * 24 20 18 43 43 H 1.08997 * 110.03230 * 359.95739 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2789 -4.9672 0.0011 13 7 2.1656 -6.1344 0.0008 14 6 1.4331 -7.4031 0.0008 15 6 2.4273 -8.5661 -0.0004 16 1 3.3850 -8.3665 0.4802 17 6 2.4269 -9.4946 -1.2165 18 6 1.8584 -9.9823 0.1177 19 1 0.7760 -10.0852 0.1960 20 6 2.6774 -11.0099 0.9012 21 6 1.9243 -12.3552 0.9559 22 6 2.2268 -12.9015 2.3741 23 6 2.2010 -11.6222 3.2469 24 6 2.8537 -10.5441 2.3571 25 1 -0.4849 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.8719 -3.6044 0.8906 29 1 2.8719 -3.6044 -0.8894 30 1 3.1356 -6.1344 -0.0003 31 1 0.8061 -7.4608 -0.8890 32 1 0.8067 -7.4610 0.8909 33 1 3.3844 -9.9059 -1.5360 34 1 1.7186 -9.2766 -2.0158 35 1 3.6519 -11.1463 0.4323 36 1 0.8534 -12.1983 0.8281 37 1 2.3045 -13.0364 0.1947 38 1 3.2104 -13.3705 2.4051 39 1 1.4539 -13.6014 2.6916 40 1 2.7828 -11.7693 4.1568 41 1 1.1755 -11.3454 3.4913 42 1 3.9137 -10.4553 2.5950 43 1 2.3564 -9.5856 2.5052 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355152244.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:18:12 Heat of formation + Delta-G solvation = -52.663160 kcal Electronic energy + Delta-G solvation = -19305.495993 eV Core-core repulsion = 16349.653241 eV Total energy + Delta-G solvation = -2955.842753 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.64538 -38.83916 -36.68284 -33.83960 -33.40727 -30.98829 -29.22062 -28.93017 -27.06854 -25.06906 -22.25468 -21.65973 -21.31501 -20.67870 -19.85865 -19.19846 -16.84439 -16.30707 -16.07336 -15.57392 -15.21255 -15.10901 -14.42601 -14.31738 -13.97776 -13.62073 -13.46858 -12.93650 -12.49462 -12.18738 -12.08457 -11.87875 -11.56212 -11.43482 -11.37434 -11.31586 -11.13042 -10.98565 -10.91153 -10.68134 -10.58077 -10.16146 -10.05133 -9.92389 -9.63325 -9.13848 -8.95854 -8.69343 -8.29611 -5.93858 -3.98140 3.29633 3.34723 3.36483 3.40880 3.43608 3.71361 4.24300 4.30821 4.38101 4.49513 4.68051 4.71759 4.80382 5.09156 5.16212 5.18206 5.23543 5.32436 5.40140 5.40947 5.45385 5.49552 5.59113 5.61294 5.66868 5.74973 5.80727 5.83059 5.92212 6.01529 6.04149 6.10127 6.16546 6.27040 6.28602 6.79644 6.93510 7.77039 7.89651 7.95255 8.10141 8.41543 8.83748 9.10739 9.65182 11.17155 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.044730 B = 0.002616 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.824136 B =10700.541564 C =10830.988684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.508 3.492 12 O -0.537 6.537 13 N -0.742 5.742 14 C 0.151 3.849 15 C -0.160 4.160 16 H 0.109 0.891 17 C -0.173 4.173 18 C -0.134 4.134 19 H 0.106 0.894 20 C -0.061 4.061 21 C -0.117 4.117 22 C -0.127 4.127 23 C -0.126 4.126 24 C -0.121 4.121 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.397 0.603 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.863 -26.151 2.284 27.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.297 3.703 12 O -0.412 6.412 13 N -0.396 5.396 14 C 0.026 3.974 15 C -0.178 4.178 16 H 0.127 0.873 17 C -0.209 4.209 18 C -0.153 4.153 19 H 0.124 0.876 20 C -0.080 4.080 21 C -0.155 4.155 22 C -0.164 4.164 23 C -0.163 4.163 24 C -0.159 4.159 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.231 0.769 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.798 -26.013 2.288 26.984 hybrid contribution 0.958 0.910 -0.058 1.323 sum 7.756 -25.103 2.230 26.368 Atomic orbital electron populations 1.70005 1.06053 1.26545 1.50267 1.25035 0.94837 0.99237 0.95356 0.86584 0.79758 0.83512 0.78046 1.20687 1.21232 1.19901 1.21233 0.92926 0.91039 1.51277 0.92612 1.18898 0.93202 0.89396 0.98609 1.21858 1.00691 0.91991 1.02434 1.21560 0.88649 0.85678 0.74439 1.90665 1.14522 1.87696 1.48332 1.46188 1.10023 1.05478 1.77940 1.20769 0.93168 0.81503 1.01910 1.22562 1.01038 0.91008 1.03241 0.87293 1.23241 1.02767 1.03378 0.91558 1.22550 0.99572 0.93967 0.99188 0.87552 1.21372 0.97963 0.93501 0.95131 1.22435 1.00488 0.95735 0.96825 1.22524 1.01334 0.97306 0.95251 1.22362 1.00973 0.95003 0.97984 1.22224 1.00662 0.99214 0.93773 0.92971 0.95853 0.95822 0.90292 0.90283 0.76934 0.91840 0.91619 0.88796 0.88609 0.91074 0.91335 0.91794 0.91691 0.91731 0.91912 0.91600 0.92034 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.78 13.29 55.43 0.74 -27.04 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -15.15 9.11 -34.44 -0.31 -15.46 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.69 5.64 -27.88 -0.16 -2.85 16 11 C 0.51 10.06 7.83 -10.98 -0.09 9.98 16 12 O -0.54 -13.05 15.98 5.56 0.09 -12.96 16 13 N -0.74 -10.70 5.56 -60.29 -0.33 -11.04 16 14 C 0.15 1.93 5.96 -4.04 -0.02 1.91 16 15 C -0.16 -1.49 4.96 -90.58 -0.45 -1.94 16 16 H 0.11 0.94 8.04 -51.93 -0.42 0.52 16 17 C -0.17 -1.44 9.83 -26.73 -0.26 -1.70 16 18 C -0.13 -1.11 4.71 -90.59 -0.43 -1.53 16 19 H 0.11 0.92 7.81 -51.93 -0.41 0.52 16 20 C -0.06 -0.45 3.10 -89.50 -0.28 -0.73 16 21 C -0.12 -0.79 6.37 -25.03 -0.16 -0.95 16 22 C -0.13 -0.81 6.91 -24.70 -0.17 -0.98 16 23 C -0.13 -0.89 6.83 -25.07 -0.17 -1.06 16 24 C -0.12 -0.92 6.25 -25.61 -0.16 -1.08 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.71 8.10 -51.93 -0.42 0.28 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.40 4.50 8.40 -40.82 -0.34 4.16 16 31 H 0.06 0.88 7.87 -51.93 -0.41 0.47 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.69 8.06 -51.93 -0.42 0.28 16 34 H 0.10 0.83 8.03 -51.93 -0.42 0.42 16 35 H 0.07 0.51 7.93 -51.93 -0.41 0.10 16 36 H 0.07 0.48 7.63 -51.93 -0.40 0.08 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.61 7.34 -51.93 -0.38 0.23 16 LS Contribution 349.54 15.07 5.27 5.27 Total: -1.00 -33.62 349.54 -9.92 -43.54 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -7.79 Total: -0.70 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -2.87 Total: -13.93 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.40 Total: -38.08 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.09 Total: -12.96 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.62 -9.92 -43.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355152244.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.118 kcal (2) G-P(sol) polarization free energy of solvation -33.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds