Wall clock time and date at job start Mon Mar 30 2020 19:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86798 * 120.00113 * 2 1 4 4 H 1.48503 * 109.46829 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47197 * 300.00051 * 3 2 1 6 6 H 1.48500 * 109.47066 * 60.00057 * 3 2 1 7 7 C 1.40053 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00093 * 180.02562 * 7 2 1 9 9 C 1.46379 * 119.99853 * 359.97438 * 7 2 1 10 10 O 1.21690 * 119.99904 * 0.02562 * 9 7 2 11 11 N 1.34771 * 119.99977 * 179.97438 * 9 7 2 12 12 C 1.46507 * 120.00196 * 180.02562 * 11 9 7 13 13 C 1.50700 * 109.47081 * 179.97438 * 12 11 9 14 14 O 1.21286 * 120.00017 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00051 * 179.97438 * 13 12 11 16 16 C 1.40027 * 120.00369 * 185.27480 * 15 13 12 17 17 C 1.38847 * 120.04684 * 213.58635 * 16 15 13 18 18 C 1.38109 * 119.95334 * 180.21249 * 17 16 15 19 19 C 1.38478 * 120.04911 * 359.51280 * 18 17 16 20 20 F 1.35094 * 119.96019 * 180.25413 * 19 18 17 21 21 C 1.38479 * 120.08592 * 0.23483 * 19 18 17 22 22 C 1.38115 * 120.04275 * 359.97438 * 21 19 18 23 23 H 0.96994 * 119.99788 * 0.02562 * 1 2 3 24 24 H 0.97003 * 120.00072 * 359.97438 * 11 9 7 25 25 H 1.09000 * 109.46381 * 60.00482 * 12 11 9 26 26 H 1.08990 * 109.47119 * 300.00304 * 12 11 9 27 27 H 0.97000 * 119.99433 * 5.27960 * 15 13 12 28 28 H 1.08000 * 120.02173 * 359.97438 * 17 16 15 29 29 H 1.08001 * 119.98016 * 179.78907 * 18 17 16 30 30 H 1.07997 * 119.97696 * 180.02562 * 21 19 18 31 31 H 1.08003 * 120.02057 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3462 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3964 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0001 9 6 1.2750 -2.4806 -0.0005 10 8 0.0581 -2.4805 -0.0005 11 7 1.9489 -3.6477 -0.0016 12 6 1.2163 -4.9165 -0.0022 13 6 2.1956 -6.0619 -0.0039 14 8 3.3881 -5.8403 -0.0042 15 7 1.7464 -7.3326 -0.0042 16 6 2.6515 -8.3954 0.1056 17 6 2.3987 -9.5942 -0.5476 18 6 3.2906 -10.6426 -0.4343 19 6 4.4414 -10.4954 0.3217 20 9 5.3152 -11.5204 0.4271 21 6 4.6980 -9.2988 0.9697 22 6 3.8064 -8.2494 0.8625 23 1 -0.4849 0.8400 -0.0004 24 1 2.9189 -3.6478 -0.0027 25 1 0.5894 -4.9736 -0.8920 26 1 0.5900 -4.9748 0.8879 27 1 0.7960 -7.5109 -0.0806 28 1 1.5033 -9.7081 -1.1406 29 1 3.0927 -11.5765 -0.9395 30 1 5.5962 -9.1858 1.5586 31 1 4.0071 -7.3161 1.3677 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355995378.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:23:00 Heat of formation + Delta-G solvation = -91.132153 kcal Electronic energy + Delta-G solvation = -18659.071716 eV Core-core repulsion = 15241.008418 eV Total energy + Delta-G solvation = -3418.063298 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.085 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.02594 -40.62783 -38.56945 -37.06713 -34.78311 -33.20171 -32.25650 -31.37070 -29.72852 -27.54100 -25.49995 -23.53661 -22.60623 -20.64512 -19.68788 -18.31419 -17.83117 -17.49629 -16.64583 -16.04518 -15.70660 -15.36057 -15.22886 -14.92617 -14.39054 -13.93375 -13.79546 -13.56696 -13.27632 -13.08954 -12.96350 -12.59439 -12.19046 -11.53823 -11.37934 -11.17632 -10.98084 -10.50214 -10.43418 -10.23565 -9.86790 -9.32633 -8.89737 -8.23578 -7.73017 -7.66366 -6.24114 -4.68359 0.86056 1.00672 2.52251 2.84364 3.12262 3.20908 3.26190 3.43324 4.08795 4.09831 4.47811 4.52746 4.61331 4.75070 4.86807 4.98565 5.13433 5.34467 5.61979 5.66094 5.86558 5.87804 6.00327 6.02604 6.03419 6.23361 6.73193 7.16822 7.41044 7.87733 7.93644 8.04683 8.29191 8.98709 9.44331 10.52674 10.70656 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.051611 B = 0.003204 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.385199 B = 8737.200390 C = 9186.060674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.540 4.540 8 H 0.071 0.929 9 C 0.556 3.444 10 O -0.583 6.583 11 N -0.758 5.758 12 C 0.117 3.883 13 C 0.511 3.489 14 O -0.514 6.514 15 N -0.677 5.677 16 C 0.146 3.854 17 C -0.121 4.121 18 C -0.134 4.134 19 C 0.074 3.926 20 F -0.143 7.143 21 C -0.132 4.132 22 C -0.094 4.094 23 H 0.268 0.732 24 H 0.393 0.607 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.415 0.585 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.576 -18.592 0.411 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.577 4.577 8 H 0.089 0.911 9 C 0.360 3.640 10 O -0.466 6.466 11 N -0.417 5.417 12 C -0.011 4.011 13 C 0.300 3.700 14 O -0.388 6.388 15 N -0.323 5.323 16 C 0.052 3.948 17 C -0.141 4.141 18 C -0.153 4.153 19 C 0.055 3.945 20 F -0.122 7.122 21 C -0.151 4.151 22 C -0.114 4.114 23 H 0.079 0.921 24 H 0.228 0.772 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.252 0.748 28 H 0.154 0.846 29 H 0.155 0.845 30 H 0.156 0.844 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.359 -18.267 0.426 18.784 hybrid contribution 0.533 0.398 -0.076 0.670 sum 4.892 -17.869 0.349 18.530 Atomic orbital electron populations 1.70026 1.07077 1.27287 1.35254 1.25722 0.94661 1.00383 0.92532 0.86274 0.80573 0.81482 0.78215 1.18668 1.20129 1.20123 1.20900 0.93812 0.89031 1.53997 0.91125 1.18261 0.87173 0.82131 0.76396 1.90599 1.14008 1.86729 1.55249 1.46053 1.09662 1.03064 1.82947 1.20659 0.93238 0.83811 1.03429 1.21411 0.90556 0.83725 0.74283 1.90683 1.16975 1.84133 1.47036 1.43629 1.10357 1.04665 1.73659 1.17823 0.92335 0.88133 0.96551 1.20763 1.01013 0.92348 1.00016 1.20897 0.93602 1.00274 1.00531 1.17682 0.89655 0.85537 1.01676 1.91484 1.68094 1.57698 1.94906 1.21060 1.01148 0.91700 1.01182 1.21106 0.93348 0.99475 0.97517 0.92094 0.77200 0.89851 0.89678 0.74831 0.84555 0.84462 0.84406 0.83575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.68 11.83 55.55 0.66 -22.03 16 2 C 0.09 2.40 5.50 -17.36 -0.10 2.31 16 3 Si 0.91 20.05 29.56 -169.99 -5.02 15.03 16 4 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.54 -15.27 9.54 -35.63 -0.34 -15.61 16 8 H 0.07 1.86 7.85 -52.49 -0.41 1.45 16 9 C 0.56 15.61 7.75 -12.99 -0.10 15.51 16 10 O -0.58 -18.25 15.02 5.20 0.08 -18.18 16 11 N -0.76 -17.05 5.52 -62.90 -0.35 -17.39 16 12 C 0.12 2.05 6.16 -5.19 -0.03 2.02 16 13 C 0.51 7.67 7.64 -10.99 -0.08 7.59 16 14 O -0.51 -9.18 13.35 5.55 0.07 -9.10 16 15 N -0.68 -7.47 5.34 -9.85 -0.05 -7.52 16 16 C 0.15 1.65 6.28 -83.66 -0.53 1.13 16 17 C -0.12 -1.09 9.96 -39.40 -0.39 -1.48 16 18 C -0.13 -1.22 10.02 -39.54 -0.40 -1.61 16 19 C 0.07 0.79 7.30 -39.40 -0.29 0.50 16 20 F -0.14 -1.59 17.26 2.25 0.04 -1.55 16 21 C -0.13 -1.43 10.02 -39.54 -0.40 -1.83 16 22 C -0.09 -1.15 8.65 -39.40 -0.34 -1.49 16 23 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 24 H 0.39 8.50 7.42 -40.82 -0.30 8.20 16 25 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 26 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 27 H 0.42 3.19 8.82 -40.82 -0.36 2.83 16 28 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 29 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 30 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.15 1.98 6.41 -52.48 -0.34 1.64 16 LS Contribution 287.27 15.07 4.33 4.33 Total: -1.00 -35.04 287.27 -5.90 -40.94 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -2.66 Total: 8.45 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -2.99 Total: 7.03 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.26 Total: -46.94 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: 0.15 Total: -27.28 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -35.04 -5.90 -40.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355995378.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.194 kcal (2) G-P(sol) polarization free energy of solvation -35.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds