Wall clock time and date at job start Mon Mar 30 2020 19:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35344 * 117.00450 * 2 1 4 4 C 1.36150 * 125.57433 * 179.97438 * 3 2 1 5 5 C 1.39827 * 107.19236 * 179.79598 * 4 3 2 6 6 C 1.37951 * 106.67409 * 0.37950 * 5 4 3 7 7 C 1.41618 * 126.04322 * 179.87952 * 6 5 4 8 8 O 1.21708 * 119.99763 * 359.71631 * 7 6 5 9 9 O 1.34971 * 120.00320 * 179.71629 * 7 6 5 10 10 C 1.42902 * 117.00398 * 183.04750 * 9 7 6 11 11 C 1.50705 * 112.84337 * 294.86696 * 10 9 7 12 12 H 1.08003 * 119.99927 * 118.53811 * 11 10 9 13 13 C 1.37876 * 120.00162 * 298.53005 * 11 10 9 14 14 N 1.31514 * 119.99876 * 1.84456 * 13 11 10 15 15 Si 1.86803 * 120.00033 * 181.83779 * 13 11 10 16 16 H 1.48497 * 109.47407 * 270.00364 * 15 13 11 17 17 H 1.48503 * 109.46581 * 30.00674 * 15 13 11 18 18 H 1.48504 * 109.46744 * 150.00105 * 15 13 11 19 19 C 1.53774 * 113.61501 * 66.05978 * 10 9 7 20 20 C 1.53954 * 87.02269 * 89.23270 * 19 10 9 21 21 C 1.53772 * 113.61750 * 163.67154 * 10 9 7 22 22 O 1.33994 * 125.57021 * 0.02562 * 3 2 1 23 23 H 1.08997 * 109.47672 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47281 * 300.00447 * 1 2 3 25 25 H 1.09010 * 109.47046 * 60.00021 * 1 2 3 26 26 H 1.08010 * 126.40209 * 0.07314 * 4 3 2 27 27 H 1.08004 * 126.66395 * 180.26033 * 5 4 3 28 28 H 0.96996 * 120.00261 * 354.96423 * 14 13 11 29 29 H 1.09003 * 113.61558 * 203.75158 * 19 10 9 30 30 H 1.08998 * 113.61937 * 334.65503 * 19 10 9 31 31 H 1.09001 * 113.54116 * 270.81721 * 20 19 10 32 32 H 1.09002 * 113.74437 * 139.93543 * 20 19 10 33 33 H 1.09000 * 113.61748 * 25.34680 * 21 10 9 34 34 H 1.08999 * 113.61735 * 156.16499 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 6 3.3898 1.4088 0.0005 5 6 3.5994 2.7912 -0.0045 6 6 2.3522 3.3807 0.0009 7 6 2.0881 4.7721 0.0010 8 8 3.0102 5.5664 0.0012 9 8 0.8140 5.2172 0.0009 10 6 0.6208 6.6315 -0.0667 11 6 1.1421 7.3520 1.1499 12 1 1.9308 8.0828 1.0481 13 6 0.6122 7.0784 2.3930 14 7 -0.3229 6.1627 2.5222 15 14 1.2226 8.0083 3.8938 16 1 2.3677 7.2793 4.4960 17 1 1.6594 9.3687 3.4893 18 1 0.1258 8.1160 4.8892 19 6 1.0815 7.2534 -1.3955 20 6 -0.3395 6.9826 -1.9223 21 6 -0.8089 7.0399 -0.4590 22 8 1.4263 2.3952 0.0005 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8901 26 1 4.1531 0.6446 -0.0002 27 1 4.5526 3.2989 -0.0094 28 1 -0.6916 5.7317 1.7354 29 1 1.3247 8.3132 -1.3204 30 1 1.8538 6.6758 -1.9034 31 1 -0.4545 5.9998 -2.3795 32 1 -0.7389 7.7865 -2.5407 33 1 -1.5606 6.2902 -0.2118 34 1 -1.0840 8.0407 -0.1261 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847705150.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:20:09 Heat of formation + Delta-G solvation = -101.746657 kcal Electronic energy + Delta-G solvation = -20746.810376 eV Core-core repulsion = 17419.454352 eV Total energy + Delta-G solvation = -3327.356024 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.95759 -41.55880 -39.70958 -38.94791 -36.29458 -34.53778 -34.36887 -31.09594 -28.56433 -27.92762 -26.60058 -25.29041 -23.99556 -23.14210 -21.83504 -20.41936 -19.98542 -19.51665 -18.48112 -18.26889 -17.28672 -16.83459 -16.45768 -16.02236 -15.72121 -15.55601 -15.36260 -14.56986 -14.44724 -14.35090 -14.04332 -13.92039 -13.25315 -13.09100 -12.78610 -12.62037 -12.46136 -12.34035 -12.08190 -11.94177 -11.92123 -11.58800 -11.20704 -10.95484 -10.60767 -10.15731 -9.30900 -8.62032 -6.41197 -0.26249 1.07051 1.21132 1.47899 1.54700 1.74518 1.91441 2.04961 2.27417 2.51849 3.16347 3.65259 3.76044 3.78922 3.97581 4.12858 4.15116 4.18541 4.22541 4.39229 4.49065 4.60687 4.70535 4.77128 4.86996 4.96069 5.03148 5.14527 5.29746 5.33982 5.54343 5.66360 5.96070 6.05255 6.16414 6.57415 7.02181 7.42296 8.75104 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.018823 B = 0.006771 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.162731 B = 4134.070946 C = 4511.530706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.258 6.258 3 C 0.219 3.781 4 C -0.233 4.233 5 C -0.056 4.056 6 C -0.124 4.124 7 C 0.543 3.457 8 O -0.513 6.513 9 O -0.352 6.352 10 C 0.181 3.819 11 C -0.607 4.607 12 H 0.042 0.958 13 C -0.015 4.015 14 N -0.917 5.917 15 Si 1.108 2.892 16 H -0.284 1.284 17 H -0.269 1.269 18 H -0.275 1.275 19 C -0.144 4.144 20 C -0.121 4.121 21 C -0.109 4.109 22 O -0.193 6.193 23 H 0.151 0.849 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.205 0.795 27 H 0.187 0.813 28 H 0.268 0.732 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.907 -11.025 -6.769 13.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.171 6.171 3 C 0.121 3.879 4 C -0.252 4.252 5 C -0.075 4.075 6 C -0.172 4.172 7 C 0.390 3.610 8 O -0.405 6.405 9 O -0.269 6.269 10 C 0.146 3.854 11 C -0.645 4.645 12 H 0.060 0.940 13 C -0.217 4.217 14 N -0.553 5.553 15 Si 0.930 3.070 16 H -0.211 1.211 17 H -0.193 1.193 18 H -0.200 1.200 19 C -0.182 4.182 20 C -0.159 4.159 21 C -0.147 4.147 22 O -0.093 6.093 23 H 0.169 0.831 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.222 0.778 27 H 0.204 0.796 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.068 0.932 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.728 -10.782 -5.156 12.076 hybrid contribution -0.108 0.094 -1.456 1.463 sum 1.620 -10.688 -6.613 12.673 Atomic orbital electron populations 1.23509 0.74814 1.07263 1.02734 1.86392 1.24929 1.17314 1.88492 1.21418 0.90457 0.78432 0.97573 1.21166 0.92244 0.96310 1.15502 1.22396 0.96898 0.93561 0.94695 1.19983 0.88307 0.85360 1.23575 1.18115 0.82452 0.86511 0.73901 1.90833 1.46033 1.55708 1.47970 1.86110 1.28334 1.30130 1.82335 1.20780 0.95632 0.74657 0.94343 1.22300 1.22648 1.25230 0.94300 0.93965 1.27123 0.94566 0.96045 1.03979 1.70766 1.26893 1.23792 1.33869 0.83069 0.75871 0.75447 0.72599 1.21068 1.19327 1.20027 1.23347 0.96911 1.01124 0.96774 1.22852 0.95224 1.02165 0.95610 1.22917 0.95031 1.00687 0.96023 1.84060 1.37917 1.14710 1.72637 0.83139 0.92521 0.91671 0.77795 0.79613 0.92096 0.89734 0.93390 0.90409 0.88855 0.93189 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 10.74 113.37 1.22 1.41 16 2 O -0.26 -6.17 10.55 -64.12 -0.68 -6.85 16 3 C 0.22 6.53 7.86 67.33 0.53 7.06 16 4 C -0.23 -6.10 10.89 22.17 0.24 -5.86 16 5 C -0.06 -1.81 10.58 22.59 0.24 -1.57 16 6 C -0.12 -5.20 7.00 23.04 0.16 -5.04 16 7 C 0.54 27.49 7.07 68.65 0.49 27.97 16 8 O -0.51 -27.61 14.89 19.16 0.29 -27.32 16 9 O -0.35 -18.93 8.94 -56.25 -0.50 -19.43 16 10 C 0.18 9.47 0.10 -11.02 0.00 9.46 16 11 C -0.61 -35.53 7.30 25.60 0.19 -35.35 16 12 H 0.04 2.55 7.81 -2.91 -0.02 2.52 16 13 C -0.02 -0.89 5.40 84.65 0.46 -0.43 16 14 N -0.92 -56.27 13.51 21.45 0.29 -55.98 16 15 Si 1.11 52.26 29.90 68.60 2.05 54.31 16 16 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 C -0.14 -6.46 6.87 31.18 0.21 -6.24 16 20 C -0.12 -4.58 8.02 31.18 0.25 -4.33 16 21 C -0.11 -4.98 6.66 31.12 0.21 -4.77 16 22 O -0.19 -7.40 10.14 16.38 0.17 -7.24 16 23 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.21 3.56 8.06 -2.91 -0.02 3.54 16 27 H 0.19 5.20 8.06 -2.91 -0.02 5.18 16 28 H 0.27 16.62 5.76 -92.71 -0.53 16.08 16 29 H 0.08 3.70 8.09 -2.39 -0.02 3.68 16 30 H 0.05 2.17 7.29 -2.39 -0.02 2.15 16 31 H 0.08 2.80 8.14 -2.39 -0.02 2.79 16 32 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 33 H 0.05 2.32 7.77 -2.39 -0.02 2.30 16 34 H 0.09 3.93 8.09 -2.39 -0.02 3.91 16 Total: -1.00 -73.79 299.39 7.15 -66.64 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 1.35 Total: 13.55 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: 4.19 Total: -17.69 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.29 Total: -55.98 kcal Atomic # 8 Polarization: -60.11 SS G_CDS: -0.73 Total: -60.84 kcal Atomic # 14 Polarization: 52.26 SS G_CDS: 2.05 Total: 54.31 kcal Total: -73.79 7.15 -66.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847705150.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.102 kcal (2) G-P(sol) polarization free energy of solvation -73.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds