Wall clock time and date at job start Mon Mar 30 2020 19:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76206 * 102.99984 * 2 1 4 4 C 1.39040 * 120.45795 * 359.97438 * 3 2 1 5 5 N 1.31782 * 120.79918 * 179.97438 * 4 3 2 6 6 C 1.31831 * 121.87362 * 0.02562 * 5 4 3 7 7 C 1.38914 * 120.84146 * 359.97438 * 6 5 4 8 8 N 1.39948 * 120.44453 * 179.97438 * 7 6 5 9 9 C 1.34781 * 119.99684 * 212.72391 * 8 7 6 10 10 O 1.21280 * 120.00294 * 5.26097 * 9 8 7 11 11 C 1.50703 * 119.99642 * 185.26273 * 9 8 7 12 12 C 1.53002 * 109.46838 * 179.97438 * 11 9 8 13 13 C 1.50696 * 109.47058 * 180.02562 * 12 11 9 14 14 H 1.08005 * 120.00125 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00359 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00371 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99527 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47146 * 90.00172 * 17 15 13 19 19 H 1.48500 * 109.46748 * 209.99872 * 17 15 13 20 20 H 1.48497 * 109.46987 * 330.00289 * 17 15 13 21 21 C 1.39118 * 119.10873 * 359.97438 * 7 6 5 22 22 H 1.08996 * 109.47125 * 300.00045 * 1 2 3 23 23 H 1.09009 * 109.46964 * 60.00112 * 1 2 3 24 24 H 1.09002 * 109.47001 * 179.97438 * 1 2 3 25 25 H 1.08002 * 119.60516 * 359.95743 * 4 3 2 26 26 H 1.07996 * 119.57284 * 179.97438 * 6 5 4 27 27 H 0.96995 * 120.00260 * 32.71799 * 8 7 6 28 28 H 1.08990 * 109.47335 * 299.99624 * 11 9 8 29 29 H 1.09005 * 109.47130 * 59.99893 * 11 9 8 30 30 H 1.09004 * 109.46912 * 300.00162 * 12 11 9 31 31 H 1.08997 * 109.47379 * 59.99874 * 12 11 9 32 32 H 0.96998 * 119.99829 * 180.02562 * 16 15 13 33 33 H 1.08001 * 120.85399 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.2011 2.6732 -0.0005 5 7 1.4899 3.9590 0.0000 6 6 2.7348 4.3929 0.0005 7 6 3.7998 3.5010 0.0011 8 7 5.1181 3.9708 0.0011 9 6 6.0826 3.2716 -0.6295 10 8 5.7935 2.2875 -1.2767 11 6 7.5202 3.7128 -0.5302 12 6 8.4042 2.7539 -1.3302 13 6 9.8418 3.1946 -1.2304 14 1 10.0992 4.0712 -0.6544 15 6 10.8286 2.4794 -1.8753 16 7 12.0831 2.8643 -1.7887 17 14 10.3833 0.9636 -2.8722 18 1 10.0993 1.3595 -4.2750 19 1 11.5172 0.0049 -2.8483 20 1 9.1796 0.3215 -2.2857 21 6 3.5383 2.1347 0.0016 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 0.1679 2.3586 -0.0017 26 1 2.9290 5.4553 0.0005 27 1 5.3377 4.7995 0.4548 28 1 7.6196 4.7206 -0.9329 29 1 7.8308 3.7067 0.5146 30 1 8.3047 1.7461 -0.9270 31 1 8.0937 2.7595 -2.3750 32 1 12.7772 2.3613 -2.2427 33 1 4.3448 1.4164 0.0025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891881944.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:20:41 Heat of formation + Delta-G solvation = -6.933868 kcal Electronic energy + Delta-G solvation = -16997.629151 eV Core-core repulsion = 14149.430140 eV Total energy + Delta-G solvation = -2848.199011 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.80646 -39.11587 -35.13031 -33.63022 -32.42382 -31.56051 -30.45445 -29.07041 -26.31760 -24.12162 -23.54317 -21.34158 -19.94624 -18.40506 -17.44202 -17.17972 -16.60019 -16.16497 -15.89454 -15.11254 -14.60653 -14.43192 -14.14863 -13.77212 -13.66670 -13.28873 -13.00846 -12.79613 -12.62837 -12.32118 -11.52467 -11.14714 -11.04329 -10.88373 -10.64029 -10.27677 -10.15730 -9.94823 -9.78125 -9.33292 -9.25548 -8.56912 -8.49796 -7.70961 -6.08311 -4.07999 0.72734 1.06807 1.17936 2.09235 2.78071 3.02924 3.34356 3.41437 3.51057 3.58106 4.28791 4.45983 4.62879 4.69628 4.70812 4.78714 4.84900 5.03956 5.26738 5.26965 5.29603 5.74649 5.86886 5.92794 5.95991 5.99927 6.53456 6.60607 7.25397 7.32292 7.35956 7.68800 7.71151 8.25568 8.45771 8.93770 9.54161 11.04337 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.027990 B = 0.004094 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.104990 B = 6837.673463 C = 7691.194362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 S -0.091 6.091 3 C -0.119 4.119 4 C 0.059 3.941 5 N -0.448 5.448 6 C 0.062 3.938 7 C 0.131 3.869 8 N -0.678 5.678 9 C 0.509 3.491 10 O -0.515 6.515 11 C -0.120 4.120 12 C 0.001 3.999 13 C -0.528 4.528 14 H 0.074 0.926 15 C 0.070 3.930 16 N -0.902 5.902 17 Si 0.877 3.123 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.261 1.261 21 C -0.066 4.066 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.110 0.890 25 H 0.154 0.846 26 H 0.161 0.839 27 H 0.415 0.585 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.025 0.975 31 H 0.020 0.980 32 H 0.264 0.736 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.188 -0.355 6.061 23.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 S 0.150 5.850 3 C -0.234 4.234 4 C -0.105 4.105 5 N -0.156 5.156 6 C -0.101 4.101 7 C 0.032 3.968 8 N -0.325 5.325 9 C 0.300 3.700 10 O -0.388 6.388 11 C -0.160 4.160 12 C -0.037 4.037 13 C -0.565 4.565 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.540 5.540 17 Si 0.704 3.296 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.186 1.186 21 C -0.100 4.100 22 H 0.104 0.896 23 H 0.105 0.895 24 H 0.129 0.871 25 H 0.172 0.828 26 H 0.178 0.822 27 H 0.252 0.748 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -23.155 -1.574 5.526 23.857 hybrid contribution -0.099 0.195 -0.363 0.424 sum -23.254 -1.378 5.163 23.860 Atomic orbital electron populations 1.23726 0.95047 1.07390 1.05820 1.85760 1.05850 1.01435 1.91974 1.22725 0.97027 0.98549 1.05140 1.22665 0.98470 0.88036 1.01291 1.67539 1.21060 1.16475 1.10497 1.22585 0.86680 0.99817 1.01009 1.18747 0.86055 0.93164 0.98880 1.43889 1.05371 1.27844 1.55415 1.21957 0.88563 0.82781 0.76745 1.90690 1.83193 1.26119 1.38814 1.21732 0.87455 1.02879 1.03920 1.19397 0.94408 0.94644 0.95268 1.21064 0.89328 1.13564 1.32585 0.90836 1.24966 0.94807 0.97417 0.95951 1.69903 1.00003 1.40262 1.43840 0.86806 0.78460 0.83354 0.80998 1.20192 1.21345 1.18555 1.21239 0.95493 0.95229 0.97997 0.89560 0.89529 0.87122 0.82845 0.82178 0.74819 0.89013 0.88887 0.95700 0.96134 0.92620 0.82901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.16 101.05 0.93 -0.03 16 2 S -0.09 -1.00 22.58 -107.50 -2.43 -3.43 16 3 C -0.12 -1.52 6.13 -38.92 -0.24 -1.76 16 4 C 0.06 0.69 10.54 -17.28 -0.18 0.50 16 5 N -0.45 -5.59 10.35 -12.89 -0.13 -5.72 16 6 C 0.06 0.72 11.11 -17.30 -0.19 0.53 16 7 C 0.13 1.75 6.31 -83.57 -0.53 1.22 16 8 N -0.68 -8.55 5.35 -9.79 -0.05 -8.60 16 9 C 0.51 8.61 7.59 -10.98 -0.08 8.53 16 10 O -0.51 -10.69 13.67 5.56 0.08 -10.62 16 11 C -0.12 -2.14 5.64 -27.88 -0.16 -2.30 16 12 C 0.00 0.02 3.33 -27.88 -0.09 -0.07 16 13 C -0.53 -14.68 9.66 -34.44 -0.33 -15.01 16 14 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 15 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 16 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 17 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 20 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 21 C -0.07 -0.97 8.53 -38.90 -0.33 -1.30 16 22 H 0.09 0.46 7.76 -51.93 -0.40 0.05 16 23 H 0.09 0.49 7.76 -51.92 -0.40 0.09 16 24 H 0.11 0.53 8.14 -51.92 -0.42 0.10 16 25 H 0.15 1.33 5.90 -52.49 -0.31 1.02 16 26 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 27 H 0.42 3.62 8.82 -40.82 -0.36 3.26 16 28 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 30 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 31 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.15 2.55 6.48 -52.49 -0.34 2.21 16 LS Contribution 297.80 15.07 4.49 4.49 Total: -1.00 -34.07 297.80 -7.11 -41.18 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -3.86 Total: -0.34 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -1.31 Total: -7.75 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.59 Total: -41.10 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -2.43 Total: -3.43 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.07 -7.11 -41.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891881944.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.248 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds