Wall clock time and date at job start Mon Mar 30 2020 19:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47090 * 2 1 4 4 C 1.38835 * 120.34140 * 89.99983 * 3 2 1 5 5 C 1.38356 * 118.49182 * 180.02562 * 4 3 2 6 6 C 1.39036 * 119.10609 * 0.02562 * 5 4 3 7 7 N 1.39404 * 119.70106 * 179.97438 * 6 5 4 8 8 C 1.34773 * 119.99896 * 174.91530 * 7 6 5 9 9 O 1.21275 * 120.00206 * 5.08935 * 8 7 6 10 10 C 1.50710 * 119.99727 * 185.08971 * 8 7 6 11 11 S 1.81002 * 109.46830 * 179.97438 * 10 8 7 12 12 C 1.76199 * 99.99751 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00263 * 0.02562 * 12 11 10 14 14 C 1.38798 * 119.99893 * 179.97438 * 12 11 10 15 15 N 1.31632 * 120.00183 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 120.00057 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46605 * 90.00470 * 16 14 12 18 18 H 1.48491 * 109.47193 * 210.00425 * 16 14 12 19 19 H 1.48501 * 109.46983 * 330.00662 * 16 14 12 20 20 N 1.32353 * 120.60434 * 359.97395 * 6 5 4 21 21 C 1.31934 * 121.63435 * 0.04520 * 20 6 5 22 22 H 1.08994 * 109.46941 * 299.99949 * 1 2 3 23 23 H 1.09002 * 109.46614 * 59.99949 * 1 2 3 24 24 H 1.08997 * 109.47134 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47380 * 239.99884 * 2 1 3 26 26 H 1.09002 * 109.46614 * 120.00051 * 2 1 3 27 27 H 1.08003 * 120.75803 * 0.02562 * 4 3 2 28 28 H 1.08005 * 120.45204 * 179.72427 * 5 4 3 29 29 H 0.97003 * 119.99845 * 354.91940 * 7 6 5 30 30 H 1.08999 * 109.47006 * 299.99770 * 10 8 7 31 31 H 1.08996 * 109.47037 * 60.00532 * 10 8 7 32 32 H 0.97000 * 120.00104 * 179.97438 * 15 14 12 33 33 H 1.08004 * 119.57655 * 179.97438 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2661 2.0820 1.1982 5 6 2.7266 3.3860 1.1535 6 6 2.9378 3.9867 -0.0824 7 7 3.4010 5.3001 -0.1419 8 6 3.7055 5.8541 -1.3322 9 8 3.4899 5.2439 -2.3579 10 6 4.3139 7.2317 -1.3886 11 16 4.6056 7.6922 -3.1146 12 6 5.2983 9.2967 -2.8903 13 1 5.4227 9.6969 -1.8949 14 6 5.6850 10.0460 -3.9928 15 7 5.5337 9.5581 -5.2060 16 14 6.4187 11.7474 -3.7551 17 1 7.8938 11.6363 -3.6248 18 1 6.0878 12.5973 -4.9269 19 1 5.8578 12.3608 -2.5245 20 7 2.7031 3.3228 -1.2032 21 6 2.2635 2.0789 -1.1915 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.0925 1.5898 2.1437 28 1 2.9147 3.9316 2.0664 29 1 3.5043 5.8154 0.6735 30 1 3.6324 7.9489 -0.9311 31 1 5.2601 7.2335 -0.8477 32 1 5.8036 10.0819 -5.9765 33 1 2.0827 1.5687 -2.1261 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893960115.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:20:56 Heat of formation + Delta-G solvation = -23.230579 kcal Electronic energy + Delta-G solvation = -16714.967173 eV Core-core repulsion = 13866.061484 eV Total energy + Delta-G solvation = -2848.905689 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.78355 -40.09874 -36.45150 -34.74029 -34.59084 -32.90684 -31.34579 -29.30518 -27.67584 -25.04129 -24.92848 -22.36728 -21.68824 -19.96308 -19.04085 -18.10836 -16.89059 -16.81936 -16.65360 -16.41391 -16.15363 -15.33130 -15.14741 -14.81922 -14.61973 -14.50947 -14.06413 -13.82119 -13.54100 -13.17660 -13.05824 -12.89081 -12.62394 -12.13498 -11.82977 -11.75101 -11.62070 -11.23345 -11.14808 -10.73317 -10.29864 -9.98762 -9.13600 -8.68675 -8.35291 -6.14195 0.11241 0.42686 1.21791 1.42744 1.44078 1.55771 1.63272 2.04156 2.26252 2.93098 2.99025 3.21566 3.50563 3.84758 3.93890 4.04992 4.11040 4.20719 4.26630 4.45788 4.48250 4.56977 4.77305 4.79224 5.00464 5.10811 5.16880 5.31421 5.41275 5.44055 5.47034 5.86848 6.17815 6.19662 6.99199 7.05746 7.37382 8.74053 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.063216 B = 0.003293 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.821879 B = 8499.751698 C = 8849.392661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.071 4.071 3 C -0.162 4.162 4 C -0.046 4.046 5 C -0.192 4.192 6 C 0.326 3.674 7 N -0.647 5.647 8 C 0.521 3.479 9 O -0.502 6.502 10 C -0.126 4.126 11 S -0.152 6.152 12 C -0.545 4.545 13 H 0.086 0.914 14 C 0.011 3.989 15 N -0.912 5.912 16 Si 1.001 2.999 17 H -0.268 1.268 18 H -0.279 1.279 19 H -0.256 1.256 20 N -0.528 5.528 21 C 0.107 3.893 22 H 0.057 0.943 23 H 0.042 0.958 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.176 0.824 28 H 0.172 0.828 29 H 0.436 0.564 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.271 0.729 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.427 -15.719 19.091 25.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.165 4.165 4 C -0.071 4.071 5 C -0.214 4.214 6 C 0.095 3.905 7 N -0.297 5.297 8 C 0.306 3.694 9 O -0.372 6.372 10 C -0.277 4.277 11 S 0.075 5.925 12 C -0.693 4.693 13 H 0.104 0.896 14 C -0.193 4.193 15 N -0.549 5.549 16 Si 0.823 3.177 17 H -0.193 1.193 18 H -0.204 1.204 19 H -0.180 1.180 20 N -0.243 5.243 21 C -0.050 4.050 22 H 0.076 0.924 23 H 0.061 0.939 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.111 0.889 27 H 0.193 0.807 28 H 0.189 0.811 29 H 0.276 0.724 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.080 0.920 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.573 -16.191 16.371 24.239 hybrid contribution 0.614 1.636 1.593 2.365 sum -6.959 -14.555 17.964 24.146 Atomic orbital electron populations 1.21759 0.94366 1.02512 1.01716 1.20456 0.96231 0.90073 1.04176 1.21125 1.02554 0.99339 0.93482 1.21700 0.93364 0.92771 0.99304 1.21820 1.05654 0.97456 0.96505 1.18909 0.94839 0.85967 0.90747 1.43424 1.64346 1.11549 1.10390 1.20444 0.77870 0.87510 0.83553 1.90796 1.49249 1.62733 1.34455 1.23371 1.04954 0.95828 1.03557 1.85683 1.81899 1.21212 1.03725 1.23205 1.47784 1.01873 0.96423 0.89630 1.26171 0.95604 1.03635 0.93910 1.70193 1.46043 1.39668 0.98986 0.84916 0.78468 0.75953 0.78399 1.19289 1.20377 1.18031 1.67545 1.15221 1.10561 1.30945 1.22771 0.94236 0.88861 0.99164 0.92377 0.93918 0.90834 0.90589 0.88868 0.80699 0.81072 0.72391 0.86585 0.86651 0.91992 0.82787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.90 71.98 0.71 -0.95 16 2 C -0.07 -0.86 6.09 29.85 0.18 -0.68 16 3 C -0.16 -3.01 5.15 -19.76 -0.10 -3.12 16 4 C -0.05 -0.70 9.85 22.44 0.22 -0.48 16 5 C -0.19 -3.52 9.94 22.49 0.22 -3.29 16 6 C 0.33 9.43 7.42 132.92 0.99 10.42 16 7 N -0.65 -18.35 5.39 -308.45 -1.66 -20.01 16 8 C 0.52 20.61 7.81 87.66 0.68 21.29 16 9 O -0.50 -25.16 14.13 -3.02 -0.04 -25.20 16 10 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 11 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 12 C -0.55 -31.27 9.50 67.95 0.65 -30.62 16 13 H 0.09 4.51 7.80 -2.91 -0.02 4.49 16 14 C 0.01 0.65 5.49 84.86 0.47 1.12 16 15 N -0.91 -56.73 13.22 21.65 0.29 -56.45 16 16 Si 1.00 43.77 29.55 68.60 2.03 45.80 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 18 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 20 N -0.53 -18.73 7.89 -193.04 -1.52 -20.25 16 21 C 0.11 2.91 10.85 84.64 0.92 3.82 16 22 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 23 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 25 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 26 H 0.09 0.74 8.09 -2.39 -0.02 0.72 16 27 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 28 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 29 H 0.44 7.89 8.70 -92.71 -0.81 7.08 16 30 H 0.12 4.08 8.14 -2.40 -0.02 4.06 16 31 H 0.12 4.08 8.14 -2.40 -0.02 4.06 16 32 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 33 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -83.34 306.11 3.61 -79.73 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.31 Total: 13.23 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 5.38 Total: -7.07 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -2.90 Total: -96.71 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.04 Total: -25.20 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -83.34 3.61 -79.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893960115.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.495 kcal (2) G-P(sol) polarization free energy of solvation -83.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds