Wall clock time and date at job start Mon Mar 30 2020 19:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38915 * 120.74426 * 2 1 4 4 C 1.38023 * 119.34223 * 180.27295 * 3 2 1 5 5 N 1.31957 * 120.86133 * 359.70747 * 4 3 2 6 6 C 1.32461 * 121.61875 * 0.02562 * 5 4 3 7 7 S 1.76195 * 119.71595 * 180.02562 * 6 5 4 8 8 C 1.81394 * 103.00090 * 359.97438 * 7 6 5 9 9 C 1.50703 * 109.47468 * 179.97438 * 8 7 6 10 10 O 1.21286 * 119.99857 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00047 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99912 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47373 * 180.02562 * 12 11 9 14 14 H 1.08005 * 119.99841 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00027 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00128 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99603 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47055 * 90.00556 * 17 15 13 19 19 H 1.48497 * 109.47291 * 210.00283 * 17 15 13 20 20 H 1.48496 * 109.47578 * 330.00711 * 17 15 13 21 21 C 1.38266 * 120.74613 * 179.73092 * 2 1 3 22 22 H 1.09002 * 109.46786 * 270.26438 * 1 2 3 23 23 H 1.08998 * 109.47348 * 30.26755 * 1 2 3 24 24 H 1.09001 * 109.46656 * 150.26666 * 1 2 3 25 25 H 1.08005 * 120.32999 * 0.02562 * 3 2 1 26 26 H 1.08003 * 119.57289 * 179.72149 * 4 3 2 27 27 H 1.09004 * 109.47456 * 300.00075 * 8 7 6 28 28 H 1.09003 * 109.46941 * 59.99853 * 8 7 6 29 29 H 0.97002 * 120.00483 * 0.02562 * 11 9 8 30 30 H 1.09004 * 109.46947 * 300.00677 * 12 11 9 31 31 H 1.09003 * 109.47191 * 60.00297 * 12 11 9 32 32 H 0.96994 * 120.00120 * 179.97438 * 16 15 13 33 33 H 1.08002 * 120.45555 * 0.02843 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2171 1.1939 0.0000 4 6 3.5970 1.1601 -0.0057 5 7 4.2459 0.0112 -0.0054 6 6 3.6054 -1.1482 -0.0001 7 16 4.5224 -2.6527 0.0007 8 6 6.2439 -2.0813 -0.0075 9 6 7.1684 -3.2715 -0.0069 10 8 6.7108 -4.3947 -0.0020 11 7 8.5035 -3.0877 -0.0130 12 6 9.4021 -4.2448 -0.0130 13 6 10.8324 -3.7701 -0.0197 14 1 11.0502 -2.7122 -0.0232 15 6 11.8628 -4.6862 -0.0204 16 7 11.5976 -5.9742 -0.0157 17 14 13.6356 -4.0976 -0.0295 18 1 14.1109 -3.9367 1.3682 19 1 14.4847 -5.0949 -0.7292 20 1 13.7207 -2.7934 -0.7344 21 6 2.2139 -1.1883 0.0056 22 1 -0.3633 0.0047 1.0277 23 1 -0.3634 0.8875 -0.5180 24 1 -0.3633 -0.8924 -0.5097 25 1 1.6948 2.1392 0.0004 26 1 4.1528 2.0862 -0.0103 27 1 6.4236 -1.4817 -0.8999 28 1 6.4303 -1.4766 0.8801 29 1 8.8695 -2.1894 -0.0173 30 1 9.2227 -4.8442 0.8796 31 1 9.2156 -4.8497 -0.9004 32 1 12.3225 -6.6187 -0.0166 33 1 1.6936 -2.1347 0.0096 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000918755717.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:21:04 Heat of formation + Delta-G solvation = -16.249592 kcal Electronic energy + Delta-G solvation = -16417.852578 eV Core-core repulsion = 13569.249607 eV Total energy + Delta-G solvation = -2848.602971 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.19100 -38.79001 -34.26702 -34.21859 -32.40850 -31.43043 -29.99849 -28.10264 -26.80402 -23.91471 -22.58154 -22.49558 -19.90450 -17.86309 -16.88862 -16.64363 -16.23484 -15.79083 -15.25856 -15.21066 -14.78136 -14.55824 -14.14235 -13.58558 -13.36176 -13.03824 -12.87747 -12.79076 -12.64878 -11.99282 -11.77714 -11.63168 -10.99276 -10.89686 -10.42199 -10.31579 -10.00060 -9.74646 -9.71532 -9.42567 -9.26224 -8.77046 -7.97737 -7.52357 -6.18375 -4.25629 0.82602 1.02338 1.38391 2.27194 3.21062 3.23854 3.29909 3.32385 3.49354 4.01097 4.30480 4.35436 4.43278 4.76875 4.85509 4.95891 5.17707 5.18243 5.22404 5.25725 5.34788 5.46037 5.55269 5.60042 5.71074 6.04816 6.40726 7.24489 7.33326 7.47742 7.61130 7.61813 7.93610 8.51843 8.71569 8.97976 9.40678 10.91845 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.052435 B = 0.003107 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.866210 B = 9009.120788 C = 9517.233801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.027 4.027 3 C -0.190 4.190 4 C 0.118 3.882 5 N -0.498 5.498 6 C 0.111 3.889 7 S 0.008 5.992 8 C -0.135 4.135 9 C 0.513 3.487 10 O -0.542 6.542 11 N -0.704 5.704 12 C 0.250 3.750 13 C -0.545 4.545 14 H 0.064 0.936 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.905 3.095 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 C -0.156 4.156 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.133 0.867 26 H 0.157 0.843 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.393 0.607 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.266 0.734 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.601 15.058 0.046 24.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.036 4.036 3 C -0.214 4.214 4 C -0.042 4.042 5 N -0.212 5.212 6 C -0.137 4.137 7 S 0.250 5.750 8 C -0.286 4.286 9 C 0.296 3.704 10 O -0.421 6.421 11 N -0.352 5.352 12 C 0.129 3.871 13 C -0.583 4.583 14 H 0.082 0.918 15 C -0.140 4.140 16 N -0.522 5.522 17 Si 0.732 3.268 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.182 4.182 22 H 0.096 0.904 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.151 0.849 26 H 0.174 0.826 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.226 0.774 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.148 12.809 0.044 23.037 hybrid contribution 0.805 2.166 0.007 2.311 sum -18.343 14.975 0.051 23.679 Atomic orbital electron populations 1.20835 0.90023 1.03421 1.02988 1.20221 0.96661 0.92637 0.94128 1.21919 0.95502 0.98528 1.05435 1.22716 0.91941 0.95890 0.93638 1.68172 1.39934 0.97656 1.15414 1.23695 0.94495 0.97722 0.97823 1.86265 0.98469 1.00326 1.89960 1.23697 0.94699 1.01981 1.08255 1.19596 0.83632 0.88957 0.78239 1.90707 1.76014 1.24573 1.50804 1.46379 1.04794 1.12184 1.71856 1.19179 0.86812 0.83097 0.97988 1.21212 0.90211 0.93442 1.53421 0.91810 1.24952 0.99701 0.94711 0.94639 1.69969 1.32867 1.00639 1.48744 0.86395 0.83623 0.78536 0.78244 1.20431 1.20973 1.19728 1.21500 0.92866 0.99220 1.04659 0.90381 0.90943 0.90851 0.84882 0.82584 0.86657 0.86666 0.77379 0.95287 0.95271 0.92383 0.84370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 10.06 36.01 0.36 -0.30 16 2 C -0.03 -0.24 5.91 -104.36 -0.62 -0.86 16 3 C -0.19 -1.62 9.81 -39.41 -0.39 -2.01 16 4 C 0.12 1.19 11.17 -17.58 -0.20 1.00 16 5 N -0.50 -6.52 9.43 -12.11 -0.11 -6.64 16 6 C 0.11 1.49 7.00 -16.92 -0.12 1.37 16 7 S 0.01 0.12 21.05 -107.50 -2.26 -2.14 16 8 C -0.13 -2.10 5.68 36.01 0.20 -1.89 16 9 C 0.51 10.44 7.85 -10.99 -0.09 10.36 16 10 O -0.54 -13.16 15.87 5.55 0.09 -13.07 16 11 N -0.70 -14.90 5.55 -61.47 -0.34 -15.24 16 12 C 0.25 6.63 5.43 -5.19 -0.03 6.60 16 13 C -0.54 -14.77 9.28 -34.44 -0.32 -15.09 16 14 H 0.06 1.61 7.60 -52.48 -0.40 1.22 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.88 -26.09 13.29 55.43 0.74 -25.35 16 17 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 C -0.16 -1.73 9.54 -39.21 -0.37 -2.10 16 22 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 24 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 25 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 26 H 0.16 1.13 8.06 -52.48 -0.42 0.71 16 27 H 0.12 1.63 8.14 -51.92 -0.42 1.21 16 28 H 0.12 1.63 8.14 -51.92 -0.42 1.20 16 29 H 0.39 7.10 8.32 -40.82 -0.34 6.76 16 30 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 308.54 15.07 4.65 4.65 Total: -1.00 -32.91 308.54 -8.02 -40.93 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -4.10 Total: 2.27 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -1.66 Total: -1.25 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.28 Total: -47.23 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -2.26 Total: -2.14 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.91 -8.02 -40.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918755717.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.680 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds