Wall clock time and date at job start Mon Mar 30 2020 19:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34150 * 127.02707 * 2 1 4 4 O 1.34218 * 109.14628 * 180.26531 * 3 2 1 5 5 C 1.33623 * 110.92330 * 0.02562 * 4 3 2 6 6 C 1.36498 * 108.38203 * 359.97438 * 5 4 3 7 7 C 1.47232 * 127.19649 * 180.02562 * 6 5 4 8 8 O 1.21534 * 120.00001 * 176.69058 * 7 6 5 9 9 O 1.34774 * 120.00324 * 356.69168 * 7 6 5 10 10 C 1.45199 * 117.00241 * 183.29104 * 9 7 6 11 11 C 1.52997 * 109.47594 * 183.09729 * 10 9 7 12 12 C 1.50703 * 113.00002 * 290.33128 * 11 10 9 13 13 H 1.07998 * 120.00131 * 116.60591 * 12 11 10 14 14 C 1.37874 * 119.99350 * 296.60426 * 12 11 10 15 15 N 1.31516 * 120.00368 * 353.85894 * 14 12 11 16 16 Si 1.86802 * 119.99825 * 173.85544 * 14 12 11 17 17 H 1.48501 * 109.46972 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47226 * 119.99880 * 16 14 12 19 19 H 1.48501 * 109.47143 * 239.99922 * 16 14 12 20 20 C 1.54026 * 113.82218 * 158.33644 * 11 10 9 21 21 O 1.44169 * 85.52263 * 223.20016 * 20 11 10 22 22 C 1.44178 * 93.33934 * 24.19056 * 21 20 11 23 23 H 1.09006 * 109.47008 * 269.68162 * 1 2 3 24 24 H 1.08995 * 109.47367 * 29.68185 * 1 2 3 25 25 H 1.08995 * 109.47312 * 149.68551 * 1 2 3 26 26 H 1.08001 * 125.42513 * 0.24426 * 3 2 1 27 27 H 1.07997 * 125.80692 * 180.02562 * 5 4 3 28 28 H 1.09007 * 109.46993 * 303.10199 * 10 9 7 29 29 H 1.09001 * 109.46788 * 63.09521 * 10 9 7 30 30 H 0.97006 * 119.99809 * 185.02118 * 15 14 12 31 31 H 1.09006 * 113.86179 * 337.35056 * 20 11 10 32 32 H 1.08995 * 113.86566 * 109.04814 * 20 11 10 33 33 H 1.08996 * 113.86725 * 221.65623 * 22 21 20 34 34 H 1.09005 * 113.97730 * 89.97414 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0710 0.0000 4 8 3.5922 0.6589 -0.0059 5 6 3.6631 -0.6754 -0.0104 6 6 2.3925 -1.1740 -0.0069 7 6 1.9923 -2.5909 -0.0093 8 8 0.8162 -2.8903 0.0551 9 8 2.9302 -3.5560 -0.0829 10 6 2.4601 -4.9279 -0.1548 11 6 3.6589 -5.8785 -0.1542 12 6 4.4622 -5.8139 -1.4277 13 1 5.4888 -5.4795 -1.4022 14 6 3.8865 -6.1819 -2.6252 15 7 2.6789 -6.7027 -2.6418 16 14 4.8216 -5.9407 -4.2242 17 1 6.1494 -5.3415 -3.9356 18 1 5.0065 -7.2538 -4.8925 19 1 4.0527 -5.0355 -5.1156 20 6 3.3168 -7.3111 0.2966 21 8 4.5372 -7.2410 1.0609 22 6 4.5137 -5.8009 1.1248 23 1 -0.3633 -0.0057 1.0277 24 1 -0.3634 0.8928 -0.5088 25 1 -0.3634 -0.8871 -0.5187 26 1 1.9893 2.1007 0.0038 27 1 4.5713 -1.2599 -0.0151 28 1 1.8272 -5.1407 0.7069 29 1 1.8860 -5.0677 -1.0707 30 1 2.3027 -7.0285 -3.4744 31 1 2.4167 -7.3778 0.9079 32 1 3.3424 -8.0448 -0.5090 33 1 5.4887 -5.3369 0.9763 34 1 3.9799 -5.4045 1.9887 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123060658.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:21:30 Heat of formation + Delta-G solvation = -85.445626 kcal Electronic energy + Delta-G solvation = -20288.899143 eV Core-core repulsion = 16962.249985 eV Total energy + Delta-G solvation = -3326.649158 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.52844 -39.68545 -38.90516 -35.67824 -33.79607 -32.98217 -30.86808 -29.75136 -27.22613 -25.59060 -25.35332 -24.54075 -23.09980 -20.60298 -19.82916 -19.01877 -17.74536 -16.62429 -16.26251 -16.08643 -15.51989 -15.37529 -14.84870 -14.59359 -14.37977 -14.24858 -13.75581 -13.38418 -13.10044 -12.65844 -12.50115 -12.16388 -11.97520 -11.69695 -11.49407 -11.02988 -10.79169 -10.48524 -10.19069 -9.99176 -9.63300 -9.52516 -9.34750 -9.09612 -8.75207 -8.67445 -8.36114 -6.20449 -4.25504 1.40958 2.00607 2.92075 3.22327 3.31207 3.32761 3.35102 3.51935 4.29997 4.60549 4.74711 4.86922 5.10480 5.13493 5.40182 5.53249 5.70844 5.83492 5.92571 6.04428 6.06384 6.09892 6.15849 6.30402 6.37200 6.44511 6.57359 6.95069 6.97152 7.13077 7.26746 7.30850 7.36343 7.75763 8.15336 8.44352 8.72746 9.38825 10.86609 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.018953 B = 0.006086 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.016007 B = 4599.866649 C = 5086.923631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.131 4.131 3 C -0.054 4.054 4 O -0.175 6.175 5 C 0.053 3.947 6 C -0.221 4.221 7 C 0.526 3.474 8 O -0.516 6.516 9 O -0.338 6.338 10 C 0.083 3.917 11 C 0.033 3.967 12 C -0.490 4.490 13 H 0.067 0.933 14 C 0.065 3.935 15 N -0.889 5.889 16 Si 0.899 3.101 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.051 3.949 21 O -0.389 6.389 22 C 0.032 3.968 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.207 0.793 27 H 0.224 0.776 28 H 0.039 0.961 29 H 0.091 0.909 30 H 0.266 0.734 31 H 0.048 0.952 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.149 12.678 4.605 13.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C -0.120 4.120 4 O -0.070 6.070 5 C -0.017 4.017 6 C -0.224 4.224 7 C 0.371 3.629 8 O -0.408 6.408 9 O -0.254 6.254 10 C 0.010 3.990 11 C 0.032 3.968 12 C -0.527 4.527 13 H 0.086 0.914 14 C -0.137 4.137 15 N -0.526 5.526 16 Si 0.726 3.274 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.026 4.026 21 O -0.308 6.308 22 C -0.045 4.045 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.100 0.900 26 H 0.223 0.777 27 H 0.240 0.760 28 H 0.057 0.943 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.231 12.519 4.584 13.389 hybrid contribution -0.066 -0.058 -0.989 0.993 sum -1.296 12.461 3.595 13.034 Atomic orbital electron populations 1.20239 0.88379 1.03164 1.02559 1.21397 0.97240 0.90269 1.04368 1.23616 0.79814 0.99482 1.09077 1.83793 1.29522 1.22692 1.70968 1.24809 0.99585 0.80257 0.97047 1.20671 0.93723 0.91724 1.16265 1.19992 0.84213 0.85505 0.73178 1.90768 1.19234 1.83955 1.46798 1.86520 1.38343 1.18128 1.82361 1.23567 0.99021 0.74973 1.01474 1.21112 0.91249 0.90051 0.94387 1.20667 0.97961 1.44771 0.89292 0.91435 1.24991 0.94833 0.94607 0.99290 1.69867 1.15303 1.39713 1.27730 0.86416 0.79979 0.78004 0.82998 1.19497 1.20862 1.20882 1.23912 0.85488 1.00535 0.92684 1.89489 1.42511 1.22206 1.76604 1.23993 1.00711 0.82416 0.97425 0.91169 0.91725 0.89978 0.77681 0.75988 0.94294 0.89074 0.92456 0.93392 0.88462 0.90394 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 9.98 36.01 0.36 -0.71 16 2 C -0.13 -1.82 6.37 -102.49 -0.65 -2.47 16 3 C -0.05 -0.60 11.96 29.29 0.35 -0.25 16 4 O -0.17 -2.14 10.52 7.72 0.08 -2.06 16 5 C 0.05 0.71 11.94 30.10 0.36 1.07 16 6 C -0.22 -3.64 6.31 -103.30 -0.65 -4.29 16 7 C 0.53 10.66 7.95 34.38 0.27 10.93 16 8 O -0.52 -11.49 15.19 -19.29 -0.29 -11.78 16 9 O -0.34 -7.29 9.87 -40.69 -0.40 -7.69 16 10 C 0.08 1.94 4.77 37.16 0.18 2.12 16 11 C 0.03 0.78 0.56 -154.59 -0.09 0.70 16 12 C -0.49 -12.79 8.25 -34.44 -0.28 -13.07 16 13 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 14 C 0.07 1.72 5.21 -17.82 -0.09 1.63 16 15 N -0.89 -23.96 11.27 55.43 0.62 -23.34 16 16 Si 0.90 20.66 29.55 -169.99 -5.02 15.63 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C 0.05 1.19 7.94 37.60 0.30 1.49 16 21 O -0.39 -9.21 12.40 -35.23 -0.44 -9.65 16 22 C 0.03 0.68 8.21 37.61 0.31 0.99 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 1.22 6.99 -51.93 -0.36 0.86 16 26 H 0.21 1.36 8.06 -52.49 -0.42 0.94 16 27 H 0.22 2.47 8.06 -52.49 -0.42 2.04 16 28 H 0.04 0.87 7.88 -51.92 -0.41 0.46 16 29 H 0.09 2.39 6.76 -51.93 -0.35 2.04 16 30 H 0.27 6.87 8.32 -40.82 -0.34 6.53 16 31 H 0.05 1.03 7.99 -51.93 -0.41 0.61 16 32 H 0.10 2.44 7.58 -51.93 -0.39 2.05 16 33 H 0.08 1.59 8.08 -51.93 -0.42 1.17 16 34 H 0.05 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 301.48 15.07 4.54 4.54 Total: -1.00 -30.35 301.48 -4.56 -34.91 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -4.01 Total: 1.32 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 0.36 Total: -1.88 kcal Atomic # 7 Polarization: -23.96 SS G_CDS: 0.62 Total: -23.34 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -1.05 Total: -31.18 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.35 -4.56 -34.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123060658.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.541 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds