Wall clock time and date at job start Mon Mar 30 2020 19:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47109 * 2 1 4 4 C 1.50703 * 109.47257 * 240.00389 * 2 1 3 5 5 H 1.08003 * 119.99541 * 239.99722 * 4 2 1 6 6 C 1.37877 * 120.00106 * 59.99405 * 4 2 1 7 7 N 1.31513 * 119.99659 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99765 * 180.02562 * 6 4 2 9 9 H 1.48489 * 109.47536 * 60.00174 * 8 6 4 10 10 H 1.48506 * 109.47022 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46916 * 299.99436 * 8 6 4 12 12 N 1.46496 * 109.47640 * 119.99853 * 2 1 3 13 13 C 1.46504 * 119.99884 * 59.99862 * 12 2 1 14 14 C 1.34777 * 120.00258 * 240.00516 * 12 2 1 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 12 2 16 16 C 1.50706 * 119.99762 * 179.97438 * 14 12 2 17 17 C 1.50699 * 109.46817 * 179.97438 * 16 14 12 18 18 C 1.38753 * 120.77588 * 89.99758 * 17 16 14 19 19 C 1.38099 * 119.22401 * 179.97438 * 18 17 16 20 20 N 1.31935 * 120.80068 * 0.02562 * 19 18 17 21 21 C 1.32027 * 121.68657 * 0.02562 * 20 19 18 22 22 F 1.35105 * 119.64628 * 179.97438 * 21 20 19 23 23 C 1.38510 * 120.77386 * 269.71733 * 17 16 14 24 24 H 1.09000 * 109.47163 * 299.99602 * 1 2 3 25 25 H 1.08992 * 109.47336 * 59.99890 * 1 2 3 26 26 H 1.09005 * 109.47109 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99607 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47441 * 270.00307 * 13 12 2 29 29 H 1.09005 * 109.47121 * 30.00515 * 13 12 2 30 30 H 1.08997 * 109.47160 * 150.00168 * 13 12 2 31 31 H 1.09000 * 109.47318 * 299.99141 * 16 14 12 32 32 H 1.09000 * 109.47161 * 59.99772 * 16 14 12 33 33 H 1.08001 * 120.38374 * 0.02562 * 18 17 16 34 34 H 1.08000 * 119.59749 * 179.97438 * 19 18 17 35 35 H 1.08000 * 120.42927 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6033 8 14 2.3213 -1.1202 -4.0079 9 1 1.8260 -2.5200 -4.0078 10 1 1.8269 -0.4198 -5.2205 11 1 3.8063 -1.1205 -4.0082 12 7 2.0184 -0.6905 1.1961 13 6 1.6645 -2.0931 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.0865 1.1255 1.8912 16 6 3.2952 -0.7458 3.3140 17 6 4.1329 0.2012 4.1340 18 6 3.5544 0.9923 5.1162 19 6 4.3525 1.8487 5.8489 20 7 5.6506 1.9207 5.6242 21 6 6.2359 1.1844 4.6977 22 9 7.5684 1.2917 4.5020 23 6 5.4993 0.2980 3.9286 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7093 1.1618 -3.4843 28 1 0.7377 -2.1444 1.9994 29 1 1.5296 -2.5969 0.4708 30 1 2.4630 -2.5818 1.9863 31 1 2.4472 -1.0880 3.9073 32 1 3.9006 -1.6024 3.0177 33 1 2.4926 0.9384 5.3059 34 1 3.9084 2.4675 6.6146 35 1 5.9833 -0.3058 3.1753 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144543720.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:20:45 Heat of formation + Delta-G solvation = -41.901777 kcal Electronic energy + Delta-G solvation = -19810.763672 eV Core-core repulsion = 16530.668257 eV Total energy + Delta-G solvation = -3280.095415 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.96723 -40.29796 -38.94393 -35.49771 -33.91973 -32.87215 -30.89089 -29.95832 -28.06924 -26.15039 -25.26841 -23.72175 -22.87373 -20.97245 -18.52061 -17.43136 -17.33537 -16.73878 -16.27701 -16.10893 -15.95529 -15.29601 -14.91289 -14.47951 -14.21982 -13.67783 -13.21413 -12.94831 -12.78669 -12.68636 -12.50783 -12.21304 -11.76065 -11.58599 -11.57022 -11.09450 -10.88780 -10.75806 -10.31788 -10.21806 -9.89446 -9.75239 -9.25150 -9.03999 -8.98363 -8.47334 -7.68968 -6.12060 -4.20658 0.92853 1.06151 3.22333 3.24944 3.30364 3.32157 3.46163 3.60566 3.92973 4.34109 4.38738 4.57172 4.89947 4.95907 5.09391 5.19703 5.24812 5.38534 5.53059 5.60627 5.70968 5.79325 5.93679 6.19359 6.28714 6.59097 6.69353 6.76496 6.99805 7.32981 7.46400 7.60206 7.65607 7.95135 8.13723 8.42996 8.75855 8.94374 9.45963 10.93248 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.026708 B = 0.004570 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.139306 B = 6125.536524 C = 6543.192161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.591 5.591 13 C 0.081 3.919 14 C 0.506 3.494 15 O -0.545 6.545 16 C -0.109 4.109 17 C 0.017 3.983 18 C -0.170 4.170 19 C 0.134 3.866 20 N -0.521 5.521 21 C 0.306 3.694 22 F -0.116 7.116 23 C -0.180 4.180 24 H 0.011 0.989 25 H 0.093 0.907 26 H 0.030 0.970 27 H 0.264 0.736 28 H 0.044 0.956 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.142 0.858 34 H 0.166 0.834 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.559 -5.354 14.113 15.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.322 5.322 13 C -0.063 4.063 14 C 0.291 3.709 15 O -0.424 6.424 16 C -0.149 4.149 17 C 0.009 3.991 18 C -0.190 4.190 19 C -0.022 4.022 20 N -0.236 5.236 21 C 0.152 3.848 22 F -0.095 7.095 23 C -0.201 4.201 24 H 0.030 0.970 25 H 0.112 0.888 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.160 0.840 34 H 0.183 0.817 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.171 -4.057 14.302 15.200 hybrid contribution 0.030 -1.100 -1.478 1.843 sum 3.201 -5.157 12.823 14.187 Atomic orbital electron populations 1.22078 0.98108 0.99413 1.00819 1.18957 0.90909 0.94533 0.79812 0.91908 1.21262 1.32065 1.13114 0.90292 0.92285 1.24893 0.94881 0.94958 0.98992 1.69866 1.36164 1.22488 1.23957 0.86544 0.79254 0.79553 0.81973 1.20200 1.21128 1.20238 1.48252 1.48809 1.11683 1.23488 1.21647 0.98837 0.83216 1.02615 1.20050 0.79686 0.87179 0.83946 1.90699 1.58087 1.16968 1.76625 1.20847 1.00331 0.98018 0.95728 1.19674 0.92478 0.94179 0.92785 1.22045 1.01835 0.97788 0.97361 1.22416 0.86865 0.95436 0.97471 1.66959 1.13934 1.23965 1.18701 1.18051 0.78970 0.94078 0.93655 1.91610 1.29532 1.94849 1.93501 1.21681 0.94709 1.01728 1.01963 0.97037 0.88826 0.95129 0.92561 0.93703 0.89916 0.92750 0.87598 0.87631 0.84005 0.81654 0.83613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.97 37.16 0.33 -3.04 16 2 C 0.26 6.38 2.64 -69.09 -0.18 6.20 16 3 H 0.06 1.83 6.90 -51.93 -0.36 1.47 16 4 C -0.53 -13.89 7.99 -34.44 -0.28 -14.16 16 5 H 0.06 1.51 7.33 -52.48 -0.38 1.13 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.74 11.32 55.43 0.63 -24.11 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.59 -11.77 2.75 -175.26 -0.48 -12.25 16 13 C 0.08 1.21 9.24 59.85 0.55 1.77 16 14 C 0.51 9.64 7.67 -10.98 -0.08 9.55 16 15 O -0.55 -12.91 15.36 5.56 0.09 -12.82 16 16 C -0.11 -1.40 4.43 -29.03 -0.13 -1.53 16 17 C 0.02 0.23 4.41 -104.33 -0.46 -0.23 16 18 C -0.17 -2.04 9.82 -39.44 -0.39 -2.43 16 19 C 0.13 1.60 11.18 -17.56 -0.20 1.41 16 20 N -0.52 -7.68 10.37 -13.59 -0.14 -7.82 16 21 C 0.31 4.57 8.41 -17.35 -0.15 4.43 16 22 F -0.12 -1.73 17.29 2.25 0.04 -1.69 16 23 C -0.18 -2.51 9.79 -39.36 -0.39 -2.90 16 24 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 26 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.36 7.02 -51.93 -0.36 1.00 16 30 H 0.05 0.62 6.44 -51.93 -0.33 0.29 16 31 H 0.11 1.04 8.07 -51.93 -0.42 0.62 16 32 H 0.11 1.12 7.36 -51.93 -0.38 0.74 16 33 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 303.42 15.07 4.57 4.57 Total: -1.00 -32.17 303.42 -5.98 -38.15 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -4.21 Total: -0.37 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -1.45 Total: 0.73 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.00 Total: -44.18 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.82 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.17 -5.98 -38.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144543720.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.756 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds