Wall clock time and date at job start Mon Mar 30 2020 19:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47109 * 2 1 4 4 C 1.50703 * 109.47257 * 240.00389 * 2 1 3 5 5 H 1.08003 * 119.99541 * 239.99722 * 4 2 1 6 6 C 1.37877 * 120.00106 * 59.99405 * 4 2 1 7 7 N 1.31513 * 119.99659 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99765 * 180.02562 * 6 4 2 9 9 H 1.48489 * 109.47536 * 60.00174 * 8 6 4 10 10 H 1.48506 * 109.47022 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46916 * 299.99436 * 8 6 4 12 12 N 1.46496 * 109.47640 * 119.99853 * 2 1 3 13 13 C 1.46504 * 119.99884 * 59.99862 * 12 2 1 14 14 C 1.34777 * 120.00258 * 240.00516 * 12 2 1 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 12 2 16 16 C 1.50706 * 119.99762 * 179.97438 * 14 12 2 17 17 C 1.50699 * 109.46817 * 179.97438 * 16 14 12 18 18 C 1.38753 * 120.77588 * 89.99758 * 17 16 14 19 19 C 1.38099 * 119.22401 * 179.97438 * 18 17 16 20 20 N 1.31935 * 120.80068 * 0.02562 * 19 18 17 21 21 C 1.32027 * 121.68657 * 0.02562 * 20 19 18 22 22 F 1.35105 * 119.64628 * 179.97438 * 21 20 19 23 23 C 1.38510 * 120.77386 * 269.71733 * 17 16 14 24 24 H 1.09000 * 109.47163 * 299.99602 * 1 2 3 25 25 H 1.08992 * 109.47336 * 59.99890 * 1 2 3 26 26 H 1.09005 * 109.47109 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99607 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47441 * 270.00307 * 13 12 2 29 29 H 1.09005 * 109.47121 * 30.00515 * 13 12 2 30 30 H 1.08997 * 109.47160 * 150.00168 * 13 12 2 31 31 H 1.09000 * 109.47318 * 299.99141 * 16 14 12 32 32 H 1.09000 * 109.47161 * 59.99772 * 16 14 12 33 33 H 1.08001 * 120.38374 * 0.02562 * 18 17 16 34 34 H 1.08000 * 119.59749 * 179.97438 * 19 18 17 35 35 H 1.08000 * 120.42927 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6033 8 14 2.3213 -1.1202 -4.0079 9 1 1.8260 -2.5200 -4.0078 10 1 1.8269 -0.4198 -5.2205 11 1 3.8063 -1.1205 -4.0082 12 7 2.0184 -0.6905 1.1961 13 6 1.6645 -2.0931 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.0865 1.1255 1.8912 16 6 3.2952 -0.7458 3.3140 17 6 4.1329 0.2012 4.1340 18 6 3.5544 0.9923 5.1162 19 6 4.3525 1.8487 5.8489 20 7 5.6506 1.9207 5.6242 21 6 6.2359 1.1844 4.6977 22 9 7.5684 1.2917 4.5020 23 6 5.4993 0.2980 3.9286 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7093 1.1618 -3.4843 28 1 0.7377 -2.1444 1.9994 29 1 1.5296 -2.5969 0.4708 30 1 2.4630 -2.5818 1.9863 31 1 2.4472 -1.0880 3.9073 32 1 3.9006 -1.6024 3.0177 33 1 2.4926 0.9384 5.3059 34 1 3.9084 2.4675 6.6146 35 1 5.9833 -0.3058 3.1753 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144543720.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:20:45 Heat of formation + Delta-G solvation = -62.874588 kcal Electronic energy + Delta-G solvation = -19811.673121 eV Core-core repulsion = 16530.668257 eV Total energy + Delta-G solvation = -3281.004864 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.07331 -41.40523 -40.34019 -37.16419 -35.11456 -34.64959 -31.87658 -31.65185 -29.30807 -27.48007 -27.28240 -24.71868 -24.13117 -22.52683 -20.01653 -18.56930 -18.49214 -18.36397 -17.83955 -17.18586 -17.06299 -16.94563 -16.25853 -16.05325 -15.36844 -14.84607 -14.70186 -14.30871 -14.13607 -13.93899 -13.77845 -13.46121 -13.28968 -12.98710 -12.86841 -12.75580 -12.64589 -12.55956 -12.17098 -12.11676 -11.20646 -11.03747 -10.76900 -10.56921 -10.40102 -10.00245 -9.29978 -8.14091 -6.30526 -0.06971 0.04780 1.41949 1.44224 1.51272 1.82114 2.28255 2.44194 2.58394 2.71109 3.14276 3.35293 3.65950 3.86382 3.94420 4.03024 4.31956 4.50525 4.50873 4.62301 4.76463 4.79775 4.81176 4.83166 4.92690 5.09030 5.12999 5.22417 5.49564 5.60616 5.63570 5.68898 6.05647 6.18117 6.61496 6.78103 6.86012 7.33461 7.50158 8.89868 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.026708 B = 0.004570 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.139306 B = 6125.536524 C = 6543.192161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.261 3.739 3 H 0.006 0.994 4 C -0.538 4.538 5 H 0.063 0.937 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.260 1.260 10 H -0.286 1.286 11 H -0.279 1.279 12 N -0.600 5.600 13 C 0.075 3.925 14 C 0.497 3.503 15 O -0.603 6.603 16 C -0.092 4.092 17 C 0.001 3.999 18 C -0.165 4.165 19 C 0.131 3.869 20 N -0.543 5.543 21 C 0.280 3.720 22 F -0.125 7.125 23 C -0.188 4.188 24 H 0.021 0.979 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.263 0.737 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.148 0.852 32 H 0.134 0.866 33 H 0.172 0.828 34 H 0.202 0.798 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.964 -7.589 15.428 17.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.159 3.841 3 H 0.024 0.976 4 C -0.577 4.577 5 H 0.081 0.919 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.788 3.212 9 H -0.185 1.185 10 H -0.212 1.212 11 H -0.204 1.204 12 N -0.330 5.330 13 C -0.067 4.067 14 C 0.286 3.714 15 O -0.486 6.486 16 C -0.131 4.131 17 C -0.007 4.007 18 C -0.185 4.185 19 C -0.025 4.025 20 N -0.259 5.259 21 C 0.128 3.872 22 F -0.104 7.104 23 C -0.209 4.209 24 H 0.040 0.960 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.116 0.884 31 H 0.166 0.834 32 H 0.152 0.848 33 H 0.189 0.811 34 H 0.219 0.781 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.576 -6.347 15.643 17.077 hybrid contribution 0.188 -0.358 -1.826 1.871 sum 2.764 -6.705 13.816 15.604 Atomic orbital electron populations 1.21850 0.97100 1.00141 0.99862 1.18497 0.91629 0.92133 0.81860 0.97627 1.21580 1.31825 1.13107 0.91149 0.91861 1.25731 0.95115 0.95635 1.02058 1.70021 1.37386 1.23915 1.24410 0.85542 0.78331 0.79103 0.78236 1.18482 1.21183 1.20418 1.48233 1.48950 1.13580 1.22216 1.21943 1.01776 0.80197 1.02802 1.21111 0.78428 0.86721 0.85185 1.90676 1.59910 1.19833 1.78158 1.20831 1.01884 0.97642 0.92723 1.19906 0.92291 0.94993 0.93503 1.22451 1.03253 0.96500 0.96275 1.23082 0.85968 0.95507 0.97916 1.66986 1.15445 1.24416 1.19056 1.18285 0.78951 0.95240 0.94753 1.91575 1.30137 1.95018 1.93673 1.21849 0.95356 1.01715 1.01955 0.95970 0.91783 0.93333 0.92738 0.91123 0.91613 0.88431 0.83443 0.84804 0.81091 0.78145 0.82888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.08 8.97 71.98 0.65 -5.43 16 2 C 0.26 13.10 2.64 44.25 0.12 13.21 16 3 H 0.01 0.35 6.90 -2.38 -0.02 0.34 16 4 C -0.54 -28.39 7.99 25.60 0.20 -28.19 16 5 H 0.06 3.20 7.33 -2.91 -0.02 3.18 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -52.55 11.32 21.45 0.24 -52.31 16 8 Si 0.96 42.34 29.54 68.60 2.03 44.37 16 9 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 10 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 N -0.60 -22.99 2.75 -826.79 -2.28 -25.26 16 13 C 0.07 1.97 9.24 127.77 1.18 3.15 16 14 C 0.50 18.21 7.67 87.66 0.67 18.88 16 15 O -0.60 -29.02 15.36 -3.03 -0.05 -29.06 16 16 C -0.09 -2.00 4.43 29.10 0.13 -1.87 16 17 C 0.00 0.03 4.41 -19.68 -0.09 -0.05 16 18 C -0.17 -3.48 9.82 22.36 0.22 -3.26 16 19 C 0.13 2.85 11.18 84.64 0.95 3.80 16 20 N -0.54 -15.63 10.37 -196.92 -2.04 -17.67 16 21 C 0.28 8.37 8.41 84.74 0.71 9.08 16 22 F -0.12 -3.82 17.29 44.97 0.78 -3.04 16 23 C -0.19 -5.08 9.79 22.41 0.22 -4.86 16 24 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 3.37 6.07 -2.39 -0.01 3.35 16 26 H 0.05 2.02 7.67 -2.38 -0.02 2.00 16 27 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.98 7.02 -2.38 -0.02 1.96 16 30 H 0.10 1.72 6.44 -2.39 -0.02 1.71 16 31 H 0.15 2.02 8.07 -2.39 -0.02 2.00 16 32 H 0.13 2.19 7.36 -2.39 -0.02 2.17 16 33 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.20 2.70 8.06 -2.91 -0.02 2.68 16 35 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -74.22 303.42 5.19 -69.03 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 1.10 Total: 8.27 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 5.41 Total: 5.68 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -4.08 Total: -95.24 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.05 Total: -29.06 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.78 Total: -3.04 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -74.22 5.19 -69.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144543720.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.154 kcal (2) G-P(sol) polarization free energy of solvation -74.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds