Wall clock time and date at job start Mon Mar 30 2020 19:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09007 * 109.47083 * 2 1 4 4 N 1.46503 * 109.47125 * 119.99821 * 2 1 3 5 5 C 1.34771 * 120.00114 * 275.00163 * 4 2 1 6 6 O 1.21583 * 120.00312 * 359.97438 * 5 4 2 7 7 N 1.34783 * 119.99848 * 180.02562 * 5 4 2 8 8 C 1.46493 * 119.99959 * 359.97438 * 7 5 4 9 9 C 1.37198 * 119.99863 * 180.02562 * 7 5 4 10 10 H 1.08006 * 119.99519 * 322.71212 * 9 7 5 11 11 C 1.38874 * 120.00119 * 142.71696 * 9 7 5 12 12 N 1.31473 * 120.00169 * 158.48735 * 11 9 7 13 13 Si 1.86799 * 119.99932 * 338.48129 * 11 9 7 14 14 H 1.48500 * 109.47144 * 95.73831 * 13 11 9 15 15 H 1.48498 * 109.47177 * 215.74231 * 13 11 9 16 16 H 1.48512 * 109.47064 * 335.74222 * 13 11 9 17 17 C 1.50700 * 109.47378 * 240.00403 * 2 1 3 18 18 C 1.38241 * 119.97665 * 100.00072 * 17 2 1 19 19 C 1.38197 * 120.02483 * 180.02562 * 18 17 2 20 20 C 1.38461 * 119.97687 * 359.97438 * 19 18 17 21 21 F 1.35092 * 120.02701 * 179.97438 * 20 19 18 22 22 C 1.38462 * 119.94288 * 0.25613 * 20 19 18 23 23 C 1.38193 * 119.97781 * 359.51372 * 22 20 19 24 24 H 1.09007 * 109.47083 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47381 * 299.99572 * 1 2 3 26 26 H 1.09001 * 109.47564 * 60.00443 * 1 2 3 27 27 H 0.97001 * 119.99498 * 95.00718 * 4 2 1 28 28 H 1.09002 * 109.47457 * 85.05454 * 8 7 5 29 29 H 1.09001 * 109.47289 * 205.05180 * 8 7 5 30 30 H 1.08998 * 109.47414 * 325.04928 * 8 7 5 31 31 H 0.97002 * 120.00024 * 180.02562 * 12 11 9 32 32 H 1.08001 * 119.98698 * 359.97438 * 18 17 2 33 33 H 1.07998 * 120.01379 * 180.02562 * 19 18 17 34 34 H 1.08010 * 120.00687 * 179.74426 * 22 20 19 35 35 H 1.08006 * 119.98854 * 180.24978 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1469 -0.0183 2.3571 6 8 1.8582 1.1615 2.4117 7 7 2.5967 -0.6535 3.4575 8 6 2.9451 -2.0749 3.3917 9 6 2.7272 0.0308 4.6394 10 1 3.0648 1.0567 4.6350 11 6 2.4253 -0.5957 5.8415 12 7 2.9272 -0.1363 6.9665 13 14 1.3060 -2.0911 5.8601 14 1 2.1300 -3.3264 5.8492 15 1 0.4671 -2.0663 7.0852 16 1 0.4309 -2.0693 4.6604 17 6 2.0323 -0.7103 -1.2305 18 6 2.4586 0.0201 -2.3240 19 6 2.9190 -0.6302 -3.4531 20 6 2.9537 -2.0140 -3.4887 21 9 3.4031 -2.6508 -4.5921 22 6 2.5220 -2.7445 -2.3946 23 6 2.0664 -2.0919 -1.2648 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 2.2490 -1.6317 1.1526 28 1 3.9711 -2.1816 3.0393 29 1 2.8538 -2.5177 4.3835 30 1 2.2698 -2.5831 2.7034 31 1 2.7167 -0.5741 7.8061 32 1 2.4311 1.0994 -2.2962 33 1 3.2524 -0.0594 -4.3072 34 1 2.5447 -3.8240 -2.4228 35 1 1.7334 -2.6616 -0.4098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193126095.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:22:14 Heat of formation + Delta-G solvation = -29.110936 kcal Electronic energy + Delta-G solvation = -19898.600589 eV Core-core repulsion = 16619.059827 eV Total energy + Delta-G solvation = -3279.540762 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.06153 -39.91403 -38.73968 -35.52527 -34.42562 -32.11413 -31.39654 -30.70505 -28.80007 -26.46097 -24.90099 -23.61487 -23.17978 -20.97008 -19.50090 -18.06250 -17.42107 -16.96070 -16.52370 -15.77168 -15.69340 -15.49672 -14.76823 -14.56331 -14.21629 -13.74433 -13.58747 -13.32631 -13.15649 -12.75770 -12.63490 -12.43563 -12.28246 -12.05217 -11.75325 -11.56117 -11.21590 -10.84595 -10.78105 -10.33545 -9.90227 -9.31242 -9.12632 -8.87618 -8.71497 -8.45838 -7.68696 -6.30686 -3.88395 0.93459 1.03263 3.06269 3.26099 3.29147 3.34514 3.71046 4.06788 4.17937 4.23803 4.52944 4.57048 4.69169 4.90482 5.06659 5.16506 5.19748 5.45424 5.52712 5.68613 5.69638 5.74505 5.88536 5.92035 6.00787 6.07274 6.09636 6.25930 6.35570 6.45030 6.68977 7.15289 7.30342 7.88118 8.41993 8.84605 9.06844 9.42335 9.95732 10.82033 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.032924 B = 0.004578 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.239231 B = 6115.235886 C = 6433.694033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.203 3.797 3 H 0.096 0.904 4 N -0.757 5.757 5 C 0.674 3.326 6 O -0.600 6.600 7 N -0.494 5.494 8 C 0.069 3.931 9 C -0.298 4.298 10 H 0.105 0.895 11 C 0.055 3.945 12 N -0.872 5.872 13 Si 0.879 3.121 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.267 1.267 17 C -0.090 4.090 18 C -0.080 4.080 19 C -0.150 4.150 20 C 0.090 3.910 21 F -0.143 7.143 22 C -0.150 4.150 23 C -0.085 4.085 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.386 0.614 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.272 0.728 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.924 -6.784 -18.770 20.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.097 3.903 3 H 0.114 0.886 4 N -0.417 5.417 5 C 0.377 3.623 6 O -0.480 6.480 7 N -0.220 5.220 8 C -0.075 4.075 9 C -0.426 4.426 10 H 0.122 0.878 11 C -0.149 4.149 12 N -0.510 5.510 13 Si 0.708 3.292 14 H -0.206 1.206 15 H -0.216 1.216 16 H -0.192 1.192 17 C -0.091 4.091 18 C -0.098 4.098 19 C -0.169 4.169 20 C 0.071 3.929 21 F -0.122 7.122 22 C -0.168 4.168 23 C -0.103 4.103 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.221 0.779 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.086 -5.937 -18.500 19.541 hybrid contribution -0.369 -1.582 -0.040 1.625 sum -2.455 -7.520 -18.540 20.157 Atomic orbital electron populations 1.22194 0.94804 1.01985 1.02613 1.19453 0.93690 0.96610 0.80598 0.88601 1.45434 1.74058 1.13045 1.09151 1.16157 0.79959 0.85756 0.80421 1.90771 1.58331 1.14628 1.84258 1.42883 1.62116 1.08200 1.08821 1.21876 0.99136 0.84649 1.01791 1.18907 1.43678 0.99884 0.80133 0.87793 1.25334 0.96451 0.98147 0.94980 1.69764 1.41012 1.41640 0.98542 0.86936 0.81891 0.82391 0.78022 1.20557 1.21634 1.19163 1.20223 0.98871 0.93890 0.96115 1.20920 0.96609 1.00531 0.91749 1.21126 1.03153 0.92511 1.00142 1.17728 1.00393 0.90796 0.83999 1.91488 1.86962 1.82301 1.51432 1.21115 1.02023 1.00736 0.92972 1.20845 0.98123 0.93953 0.97420 0.92785 0.91051 0.92112 0.77865 0.93327 0.91415 0.93640 0.91774 0.84577 0.84694 0.84726 0.85063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.46 37.15 0.35 -1.77 16 2 C 0.20 2.94 2.78 -69.09 -0.19 2.75 16 3 H 0.10 1.54 7.44 -51.93 -0.39 1.15 16 4 N -0.76 -13.10 4.89 -59.81 -0.29 -13.39 16 5 C 0.67 15.72 8.20 -86.92 -0.71 15.01 16 6 O -0.60 -16.26 15.87 5.29 0.08 -16.18 16 7 N -0.49 -12.05 2.59 -127.61 -0.33 -12.38 16 8 C 0.07 1.36 8.69 59.84 0.52 1.88 16 9 C -0.30 -8.57 9.37 -14.91 -0.14 -8.71 16 10 H 0.10 3.36 7.91 -52.48 -0.41 2.94 16 11 C 0.06 1.55 5.29 -17.47 -0.09 1.45 16 12 N -0.87 -25.58 13.96 55.49 0.77 -24.80 16 13 Si 0.88 20.73 24.96 -169.99 -4.24 16.49 16 14 H -0.28 -6.08 6.70 56.52 0.38 -5.70 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 17 C -0.09 -1.06 4.96 -104.62 -0.52 -1.58 16 18 C -0.08 -0.83 9.67 -39.60 -0.38 -1.21 16 19 C -0.15 -1.48 10.03 -39.51 -0.40 -1.88 16 20 C 0.09 0.96 7.30 -39.42 -0.29 0.68 16 21 F -0.14 -1.61 17.27 2.25 0.04 -1.57 16 22 C -0.15 -1.50 10.03 -39.52 -0.40 -1.90 16 23 C -0.09 -0.90 9.05 -39.59 -0.36 -1.26 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.39 5.69 4.71 -40.82 -0.19 5.50 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.41 3.43 -51.93 -0.18 1.23 16 30 H 0.05 0.72 6.63 -51.93 -0.34 0.38 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.14 1.19 8.04 -52.49 -0.42 0.77 16 33 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.13 1.24 6.91 -52.48 -0.36 0.88 16 LS Contribution 297.33 15.07 4.48 4.48 Total: -1.00 -32.98 297.33 -6.09 -39.07 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -4.00 Total: 4.83 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -2.60 Total: 3.46 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.15 Total: -50.58 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: 0.08 Total: -16.18 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.24 Total: 16.49 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.98 -6.09 -39.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193126095.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.959 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds