Wall clock time and date at job start Mon Mar 30 2020 19:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30651 * 128.64462 * 2 1 4 4 O 1.20835 * 109.61947 * 180.02562 * 3 2 1 5 5 N 1.20899 * 115.90910 * 359.72870 * 4 3 2 6 6 C 1.31603 * 109.18150 * 0.43455 * 5 4 3 7 7 C 1.48280 * 128.71483 * 179.88456 * 6 5 4 8 8 O 1.21504 * 119.99702 * 179.67525 * 7 6 5 9 9 N 1.34772 * 119.99619 * 359.66901 * 7 6 5 10 10 C 1.46505 * 119.99519 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47037 * 174.42833 * 10 9 7 12 12 N 1.46503 * 115.54635 * 324.36050 * 11 10 9 13 13 C 1.36930 * 120.00365 * 295.00104 * 12 11 10 14 14 H 1.08001 * 120.00216 * 356.89295 * 13 12 11 15 15 C 1.38814 * 120.00369 * 176.89078 * 13 12 11 16 16 N 1.31621 * 119.99789 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00069 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47317 * 89.99789 * 17 15 13 19 19 H 1.48502 * 109.46698 * 209.99698 * 17 15 13 20 20 H 1.48501 * 109.46960 * 329.99229 * 17 15 13 21 21 C 1.52996 * 117.50206 * 110.03047 * 11 10 9 22 22 C 1.52995 * 117.50054 * 178.69769 * 11 10 9 23 23 H 1.08997 * 109.47063 * 269.98222 * 1 2 3 24 24 H 1.09004 * 109.46673 * 29.97716 * 1 2 3 25 25 H 1.08999 * 109.47225 * 149.97892 * 1 2 3 26 26 H 0.96997 * 120.00621 * 0.02562 * 9 7 6 27 27 H 1.08994 * 109.47308 * 54.42632 * 10 9 7 28 28 H 1.09000 * 109.46996 * 294.42274 * 10 9 7 29 29 H 0.97005 * 120.00043 * 115.27972 * 12 11 10 30 30 H 0.96997 * 120.00046 * 179.97438 * 16 15 13 31 31 H 1.08997 * 117.49987 * 215.00261 * 21 11 10 32 32 H 1.08999 * 117.49728 * 0.03149 * 21 11 10 33 33 H 1.09001 * 117.50068 * 359.97158 * 22 11 10 34 34 H 1.08997 * 117.50331 * 144.97376 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3229 1.0204 0.0000 4 8 3.4652 0.6265 -0.0005 5 7 3.6101 -0.5737 0.0043 6 6 2.4280 -1.1520 -0.0005 7 6 2.1033 -2.5988 0.0001 8 8 0.9435 -2.9612 0.0011 9 7 3.0946 -3.5119 -0.0006 10 6 2.7738 -4.9413 -0.0006 11 6 4.0629 -5.7533 -0.1415 12 7 5.0913 -5.1620 -1.0012 13 6 4.8568 -5.0060 -2.3412 14 1 3.9342 -5.3645 -2.7733 15 6 5.8049 -4.3871 -3.1443 16 7 6.9291 -3.9497 -2.6176 17 14 5.4847 -4.1738 -4.9723 18 1 4.8013 -2.8764 -5.2070 19 1 6.7754 -4.1933 -5.7064 20 1 4.6230 -5.2820 -5.4565 21 6 4.5333 -6.5494 1.0775 22 6 3.9418 -7.2784 -0.1316 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 4.0205 -3.2226 -0.0011 27 1 2.1105 -5.1649 -0.8360 28 1 2.2802 -5.2029 0.9354 29 1 5.9399 -4.8846 -0.6218 30 1 7.5917 -3.5176 -3.1789 31 1 5.6078 -6.6331 1.2398 32 1 3.9240 -6.4950 1.9797 33 1 2.9438 -7.7034 -0.0243 34 1 4.6270 -7.8419 -0.7649 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269548775.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:23:09 Heat of formation + Delta-G solvation = 96.647448 kcal Electronic energy + Delta-G solvation = -20148.064362 eV Core-core repulsion = 16893.896854 eV Total energy + Delta-G solvation = -3254.167508 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.98338 -40.87782 -39.02489 -36.32063 -35.85859 -35.16361 -34.98978 -31.64516 -30.53323 -28.69359 -26.17494 -25.87688 -23.63632 -23.21428 -21.79206 -20.87547 -20.16688 -19.45696 -19.10213 -18.20098 -17.49137 -16.64240 -16.36105 -15.97996 -15.51134 -15.19934 -15.04914 -14.74365 -14.44426 -14.32610 -13.99466 -13.61411 -13.02383 -12.95745 -12.91442 -12.87414 -12.28963 -12.27954 -12.19351 -11.97820 -11.77437 -11.50320 -11.40284 -10.96693 -10.70689 -10.07875 -9.06854 -7.97784 -5.26708 -0.35525 0.22135 1.41548 1.43400 1.50205 1.58333 1.83015 2.29587 2.37969 2.49556 2.80477 3.05760 3.38160 3.60450 3.61879 3.75900 3.85235 4.09234 4.15745 4.39348 4.60834 4.66471 4.71835 4.81821 4.86370 5.02528 5.08025 5.14441 5.29372 5.42154 5.54919 6.24099 6.29931 6.85052 7.31238 7.33694 8.02694 8.26230 9.24018 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.014850 B = 0.006960 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.009775 B = 4021.850622 C = 5100.331846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.071 3.929 3 N -0.367 5.367 4 O 0.341 5.659 5 N -0.325 5.325 6 C -0.061 4.061 7 C 0.601 3.399 8 O -0.542 6.542 9 N -0.680 5.680 10 C 0.156 3.844 11 C 0.092 3.908 12 N -0.697 5.697 13 C -0.223 4.223 14 H 0.068 0.932 15 C -0.063 4.063 16 N -0.959 5.959 17 Si 0.955 3.045 18 H -0.296 1.296 19 H -0.295 1.295 20 H -0.272 1.272 21 C -0.159 4.159 22 C -0.181 4.181 23 H 0.114 0.886 24 H 0.108 0.892 25 H 0.096 0.904 26 H 0.411 0.589 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.378 0.622 30 H 0.250 0.750 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.112 0.888 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.475 3.300 8.820 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.096 4.096 3 N -0.096 5.096 4 O 0.116 5.884 5 N -0.042 5.042 6 C -0.226 4.226 7 C 0.383 3.617 8 O -0.419 6.419 9 N -0.330 5.330 10 C 0.031 3.969 11 C 0.000 4.000 12 N -0.336 5.336 13 C -0.355 4.355 14 H 0.086 0.914 15 C -0.256 4.256 16 N -0.609 5.609 17 Si 0.786 3.214 18 H -0.223 1.223 19 H -0.222 1.222 20 H -0.197 1.197 21 C -0.196 4.196 22 C -0.221 4.221 23 H 0.132 0.868 24 H 0.127 0.873 25 H 0.114 0.886 26 H 0.247 0.753 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.211 0.789 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.140 0.860 33 H 0.130 0.870 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.361 3.674 8.640 14.738 hybrid contribution 0.608 -0.153 -1.253 1.401 sum -10.752 3.521 7.387 13.512 Atomic orbital electron populations 1.20526 0.80359 1.05940 1.06111 1.26756 1.01585 0.84061 0.97151 1.75029 0.91077 1.24215 1.19240 1.85065 1.23746 1.16269 1.63333 1.75476 1.23562 0.93100 1.12111 1.26202 0.88560 0.98732 1.09150 1.16525 0.85490 0.81929 0.77738 1.90743 1.19113 1.79964 1.52112 1.45763 1.09882 1.06830 1.70536 1.21246 0.95945 0.77850 1.01840 1.20488 0.91233 0.91062 0.97183 1.41828 1.14765 1.72777 1.04181 1.19291 1.01299 1.29731 0.85155 0.91387 1.25333 0.97002 1.02017 1.01259 1.69761 1.09211 1.46335 1.35635 0.85413 0.76490 0.77637 0.81896 1.22325 1.22174 1.19651 1.23300 1.01556 1.02432 0.92354 1.23375 1.02565 0.95025 1.01129 0.86808 0.87328 0.88560 0.75251 0.92237 0.88917 0.78865 0.94068 0.89447 0.86007 0.87002 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.22 71.23 0.73 -0.57 16 2 C 0.07 1.88 7.79 45.17 0.35 2.23 16 3 N -0.37 -10.19 12.22 -51.79 -0.63 -10.83 16 4 O 0.34 10.39 11.65 140.86 1.64 12.03 16 5 N -0.32 -11.04 12.13 -52.05 -0.63 -11.67 16 6 C -0.06 -1.99 7.56 44.29 0.34 -1.66 16 7 C 0.60 20.90 7.85 86.92 0.68 21.58 16 8 O -0.54 -19.32 15.95 -3.73 -0.06 -19.38 16 9 N -0.68 -24.33 5.39 -465.55 -2.51 -26.84 16 10 C 0.16 5.15 5.69 86.38 0.49 5.64 16 11 C 0.09 3.25 2.46 3.60 0.01 3.26 16 12 N -0.70 -31.84 4.49 -303.36 -1.36 -33.20 16 13 C -0.22 -11.61 9.81 84.04 0.82 -10.78 16 14 H 0.07 3.54 7.83 -2.91 -0.02 3.51 16 15 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 16 N -0.96 -56.21 13.06 21.65 0.28 -55.92 16 17 Si 0.96 45.75 29.55 68.60 2.03 47.78 16 18 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 19 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 21 C -0.16 -4.44 10.11 30.62 0.31 -4.13 16 22 C -0.18 -5.49 10.18 30.62 0.31 -5.18 16 23 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.10 1.91 7.31 -2.39 -0.02 1.89 16 26 H 0.41 16.06 7.64 -92.71 -0.71 15.36 16 27 H 0.06 2.11 8.13 -2.39 -0.02 2.09 16 28 H 0.09 2.53 7.91 -2.39 -0.02 2.51 16 29 H 0.38 18.80 8.03 -92.70 -0.74 18.05 16 30 H 0.25 14.48 8.31 -92.71 -0.77 13.70 16 31 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.12 2.64 8.06 -2.39 -0.02 2.62 16 33 H 0.11 2.77 8.14 -2.39 -0.02 2.76 16 34 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -61.76 306.86 2.97 -58.79 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: -0.30 Total: 31.86 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 4.51 Total: 7.39 kcal Atomic # 7 Polarization: -133.61 SS G_CDS: -4.85 Total: -138.47 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 1.58 Total: -7.35 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -61.76 2.97 -58.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269548775.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.442 kcal (2) G-P(sol) polarization free energy of solvation -61.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds