Wall clock time and date at job start Mon Mar 30 2020 19:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21275 * 119.99660 * 2 1 4 4 N 1.34777 * 119.99746 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99521 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47044 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.47315 * 180.02562 * 6 5 4 8 8 C 1.38802 * 119.99963 * 179.97438 * 7 6 5 9 9 C 1.38632 * 120.21734 * 359.72093 * 8 7 6 10 10 C 1.38222 * 120.21550 * 179.74261 * 9 8 7 11 11 C 1.38790 * 120.66167 * 0.56758 * 10 9 8 12 12 C 1.37737 * 120.42870 * 359.68886 * 11 10 9 13 13 F 1.35109 * 120.11533 * 180.02562 * 12 11 10 14 14 C 1.40996 * 119.76646 * 0.02928 * 12 11 10 15 15 C 1.40995 * 120.31738 * 180.02562 * 14 12 11 16 16 H 1.07995 * 119.99592 * 216.78203 * 15 14 12 17 17 C 1.39904 * 120.00092 * 36.78929 * 15 14 12 18 18 N 1.30901 * 120.00297 * 19.64903 * 17 15 14 19 19 Si 1.86809 * 119.99970 * 199.64821 * 17 15 14 20 20 H 1.48493 * 109.46882 * 89.99752 * 19 17 15 21 21 H 1.48499 * 109.47184 * 210.00073 * 19 17 15 22 22 H 1.48498 * 109.46608 * 329.99847 * 19 17 15 23 23 H 1.08999 * 109.46802 * 239.99647 * 1 2 3 24 24 H 1.08997 * 109.46979 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47129 * 120.00091 * 1 2 3 26 26 H 0.96992 * 120.00212 * 0.02562 * 4 2 1 27 27 H 1.08993 * 109.47114 * 60.00151 * 5 4 2 28 28 H 1.09006 * 109.47568 * 300.00089 * 5 4 2 29 29 H 1.09006 * 109.46593 * 300.00175 * 6 5 4 30 30 H 1.09003 * 109.47506 * 59.99762 * 6 5 4 31 31 H 0.96995 * 119.99432 * 359.97438 * 7 6 5 32 32 H 1.08000 * 119.89272 * 0.02562 * 9 8 7 33 33 H 1.07998 * 119.66692 * 180.27572 * 10 9 8 34 34 H 1.08000 * 119.78370 * 179.72206 * 11 10 9 35 35 H 0.97008 * 120.00457 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1559 -2.6097 0.0001 7 7 5.6210 -2.6097 0.0001 8 6 6.3149 -3.8118 0.0008 9 6 5.6263 -5.0150 0.0072 10 6 6.3174 -6.2120 0.0025 11 6 7.7052 -6.2280 0.0031 12 6 8.4165 -5.0485 0.0020 13 9 9.7674 -5.0715 0.0021 14 6 7.7299 -3.8170 0.0009 15 6 8.4464 -2.6027 -0.0008 16 1 8.0757 -1.7564 0.5584 17 6 9.6372 -2.4941 -0.7270 18 7 9.8959 -3.3415 -1.6906 19 14 10.8582 -1.1396 -0.3216 20 1 11.8173 -1.6279 0.7015 21 1 11.5981 -0.7560 -1.5507 22 1 10.1296 0.0416 0.2065 23 1 -0.3633 -0.5139 0.8900 24 1 -0.3633 1.0276 0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 1.6959 -2.0072 0.0005 27 1 4.0095 -0.6528 0.8894 28 1 4.0089 -0.6539 -0.8905 29 1 3.7928 -3.1233 0.8904 30 1 3.7922 -3.1238 -0.8896 31 1 6.1059 -1.7696 -0.0003 32 1 4.5464 -5.0170 0.0113 33 1 5.7720 -7.1441 0.0031 34 1 8.2308 -7.1715 0.0039 35 1 10.7218 -3.2665 -2.1939 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161663294.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:23:11 Heat of formation + Delta-G solvation = -63.157950 kcal Electronic energy + Delta-G solvation = -19496.673894 eV Core-core repulsion = 16215.656743 eV Total energy + Delta-G solvation = -3281.017151 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -46.84626 -39.66585 -37.97772 -35.71030 -33.78550 -33.50746 -30.83647 -29.72774 -28.56620 -26.61670 -24.96036 -22.82818 -20.90943 -20.82630 -19.97190 -17.38197 -17.05132 -16.70050 -15.85311 -15.70937 -15.35048 -14.86616 -14.56790 -14.18478 -13.88528 -13.62259 -13.55736 -13.30126 -12.77723 -12.67142 -12.64112 -12.01727 -11.73189 -11.55962 -11.27216 -11.16716 -11.15016 -10.72526 -10.58687 -10.14813 -10.02355 -9.50325 -9.21571 -9.00336 -8.91730 -7.15446 -6.72014 -6.41858 -4.23258 2.51583 2.76304 2.89659 3.01225 3.15251 3.18099 3.21301 4.04527 4.43524 4.64855 4.70630 4.91255 5.07283 5.09940 5.20742 5.45869 5.53709 5.59287 5.98194 6.05250 6.07702 6.09977 6.27585 6.41499 6.48690 6.96887 7.22305 7.32407 7.33192 7.36155 7.61517 7.82247 8.08061 8.09103 8.31846 8.52331 8.68427 8.90671 8.98914 10.33536 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.019305 B = 0.004955 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.046970 B = 5649.562539 C = 6956.687895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.547 6.547 4 N -0.727 5.727 5 C 0.107 3.893 6 C 0.128 3.872 7 N -0.742 5.742 8 C 0.147 3.853 9 C -0.192 4.192 10 C -0.164 4.164 11 C -0.179 4.179 12 C 0.062 3.938 13 F -0.143 7.143 14 C 0.043 3.957 15 C -0.478 4.478 16 H 0.077 0.923 17 C 0.082 3.918 18 N -0.786 5.786 19 Si 0.904 3.096 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.265 1.265 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.402 0.598 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.401 0.599 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.722 1.281 2.089 13.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.295 3.705 3 O -0.424 6.424 4 N -0.380 5.380 5 C -0.017 4.017 6 C 0.001 3.999 7 N -0.377 5.377 8 C 0.047 3.953 9 C -0.215 4.215 10 C -0.184 4.184 11 C -0.200 4.200 12 C 0.040 3.960 13 F -0.121 7.121 14 C 0.037 3.963 15 C -0.508 4.508 16 H 0.095 0.905 17 C -0.137 4.137 18 N -0.411 5.411 19 Si 0.729 3.271 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.189 1.189 23 H 0.106 0.894 24 H 0.110 0.890 25 H 0.106 0.894 26 H 0.236 0.764 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.237 0.763 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.238 1.947 1.892 13.514 hybrid contribution 0.820 0.319 -0.024 0.880 sum -12.419 2.266 1.868 12.761 Atomic orbital electron populations 1.21911 0.91626 1.05485 1.04254 1.20810 0.90613 0.83411 0.75702 1.90742 1.70917 1.31429 1.49343 1.45893 1.07409 1.08901 1.75783 1.21478 0.79413 0.97672 1.03180 1.21104 0.83737 0.94266 1.00765 1.43731 1.02287 1.06585 1.85084 1.17586 0.90565 0.84865 1.02275 1.20051 0.97222 0.91602 1.12619 1.19928 0.92753 0.95944 1.09733 1.20443 0.94461 0.95804 1.09262 1.17453 0.76435 0.93185 1.08971 1.91321 1.29684 1.97211 1.93905 1.17073 0.89134 0.92845 0.97234 1.18920 1.06102 0.97894 1.27916 0.90520 1.25658 0.98073 0.96766 0.93222 1.69790 1.23662 1.33766 1.13882 0.86381 0.80764 0.81221 0.78753 1.19437 1.20579 1.18888 0.89392 0.89030 0.89373 0.76384 0.90895 0.90817 0.92865 0.92852 0.76344 0.88787 0.88544 0.88467 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.32 36.01 0.37 -0.77 16 2 C 0.51 5.84 7.94 -10.98 -0.09 5.75 16 3 O -0.55 -9.07 17.09 5.56 0.10 -8.97 16 4 N -0.73 -7.42 5.56 -60.29 -0.33 -7.76 16 5 C 0.11 1.38 5.79 -4.04 -0.02 1.36 16 6 C 0.13 1.80 5.02 -4.04 -0.02 1.78 16 7 N -0.74 -14.06 5.63 -58.22 -0.33 -14.39 16 8 C 0.15 3.34 6.68 -83.32 -0.56 2.78 16 9 C -0.19 -4.00 9.29 -39.44 -0.37 -4.36 16 10 C -0.16 -3.47 10.03 -39.38 -0.40 -3.86 16 11 C -0.18 -4.20 9.99 -39.56 -0.40 -4.59 16 12 C 0.06 1.63 6.68 -38.72 -0.26 1.37 16 13 F -0.14 -3.95 14.28 2.25 0.03 -3.92 16 14 C 0.04 1.11 5.41 -106.57 -0.58 0.53 16 15 C -0.48 -12.50 8.12 -37.91 -0.31 -12.81 16 16 H 0.08 1.90 7.15 -52.49 -0.38 1.53 16 17 C 0.08 2.11 4.52 -17.32 -0.08 2.04 16 18 N -0.79 -21.37 11.12 55.55 0.62 -20.76 16 19 Si 0.90 19.63 29.60 -169.99 -5.03 14.60 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 23 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.09 0.63 8.12 -51.93 -0.42 0.20 16 25 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.40 2.81 8.47 -40.82 -0.35 2.46 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.71 7.93 -51.93 -0.41 0.30 16 30 H 0.05 0.73 7.95 -51.93 -0.41 0.32 16 31 H 0.40 7.75 6.91 -40.82 -0.28 7.47 16 32 H 0.09 1.67 6.71 -52.49 -0.35 1.32 16 33 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 34 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 35 H 0.28 7.05 8.30 -40.82 -0.34 6.72 16 LS Contribution 304.59 15.07 4.59 4.59 Total: -1.00 -31.83 304.59 -7.33 -39.16 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -4.27 Total: 8.24 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -2.69 Total: -10.79 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -0.05 Total: -42.90 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.10 Total: -8.97 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.03 Total: -3.92 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.83 -7.33 -39.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161663294.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.003 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds