Wall clock time and date at job start Mon Mar 30 2020 19:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21275 * 119.99660 * 2 1 4 4 N 1.34777 * 119.99746 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99521 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47044 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.47315 * 180.02562 * 6 5 4 8 8 C 1.38802 * 119.99963 * 179.97438 * 7 6 5 9 9 C 1.38632 * 120.21734 * 359.72093 * 8 7 6 10 10 C 1.38222 * 120.21550 * 179.74261 * 9 8 7 11 11 C 1.38790 * 120.66167 * 0.56758 * 10 9 8 12 12 C 1.37737 * 120.42870 * 359.68886 * 11 10 9 13 13 F 1.35109 * 120.11533 * 180.02562 * 12 11 10 14 14 C 1.40996 * 119.76646 * 0.02928 * 12 11 10 15 15 C 1.40995 * 120.31738 * 180.02562 * 14 12 11 16 16 H 1.07995 * 119.99592 * 216.78203 * 15 14 12 17 17 C 1.39904 * 120.00092 * 36.78929 * 15 14 12 18 18 N 1.30901 * 120.00297 * 19.64903 * 17 15 14 19 19 Si 1.86809 * 119.99970 * 199.64821 * 17 15 14 20 20 H 1.48493 * 109.46882 * 89.99752 * 19 17 15 21 21 H 1.48499 * 109.47184 * 210.00073 * 19 17 15 22 22 H 1.48498 * 109.46608 * 329.99847 * 19 17 15 23 23 H 1.08999 * 109.46802 * 239.99647 * 1 2 3 24 24 H 1.08997 * 109.46979 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47129 * 120.00091 * 1 2 3 26 26 H 0.96992 * 120.00212 * 0.02562 * 4 2 1 27 27 H 1.08993 * 109.47114 * 60.00151 * 5 4 2 28 28 H 1.09006 * 109.47568 * 300.00089 * 5 4 2 29 29 H 1.09006 * 109.46593 * 300.00175 * 6 5 4 30 30 H 1.09003 * 109.47506 * 59.99762 * 6 5 4 31 31 H 0.96995 * 119.99432 * 359.97438 * 7 6 5 32 32 H 1.08000 * 119.89272 * 0.02562 * 9 8 7 33 33 H 1.07998 * 119.66692 * 180.27572 * 10 9 8 34 34 H 1.08000 * 119.78370 * 179.72206 * 11 10 9 35 35 H 0.97008 * 120.00457 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1559 -2.6097 0.0001 7 7 5.6210 -2.6097 0.0001 8 6 6.3149 -3.8118 0.0008 9 6 5.6263 -5.0150 0.0072 10 6 6.3174 -6.2120 0.0025 11 6 7.7052 -6.2280 0.0031 12 6 8.4165 -5.0485 0.0020 13 9 9.7674 -5.0715 0.0021 14 6 7.7299 -3.8170 0.0009 15 6 8.4464 -2.6027 -0.0008 16 1 8.0757 -1.7564 0.5584 17 6 9.6372 -2.4941 -0.7270 18 7 9.8959 -3.3415 -1.6906 19 14 10.8582 -1.1396 -0.3216 20 1 11.8173 -1.6279 0.7015 21 1 11.5981 -0.7560 -1.5507 22 1 10.1296 0.0416 0.2065 23 1 -0.3633 -0.5139 0.8900 24 1 -0.3633 1.0276 0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 1.6959 -2.0072 0.0005 27 1 4.0095 -0.6528 0.8894 28 1 4.0089 -0.6539 -0.8905 29 1 3.7928 -3.1233 0.8904 30 1 3.7922 -3.1238 -0.8896 31 1 6.1059 -1.7696 -0.0003 32 1 4.5464 -5.0170 0.0113 33 1 5.7720 -7.1441 0.0031 34 1 8.2308 -7.1715 0.0039 35 1 10.7218 -3.2665 -2.1939 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161663294.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:23:11 Heat of formation + Delta-G solvation = -85.497837 kcal Electronic energy + Delta-G solvation = -19497.642625 eV Core-core repulsion = 16215.656743 eV Total energy + Delta-G solvation = -3281.985882 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.86471 -40.64514 -39.63839 -36.99337 -35.37883 -35.09456 -32.03238 -31.23643 -29.89163 -28.03571 -26.76349 -24.11113 -22.60882 -22.04073 -21.40487 -19.24480 -18.35157 -17.91297 -17.07935 -16.90022 -16.85007 -16.61433 -15.92290 -15.69320 -15.49495 -15.48734 -15.10948 -14.48849 -14.35480 -13.73833 -13.45586 -13.33180 -13.13557 -13.05287 -12.99797 -12.80453 -12.69072 -12.36511 -12.22681 -11.84865 -11.34267 -11.03434 -10.86094 -10.58654 -10.17232 -9.03495 -8.60180 -8.11045 -6.16241 0.96672 1.09013 1.36832 1.46788 1.48173 1.63894 2.07131 2.24302 2.81974 3.10884 3.58865 3.75742 4.00125 4.08833 4.28778 4.39256 4.49233 4.57196 4.68821 4.71102 4.81517 4.86900 4.93274 5.12444 5.18728 5.33336 5.37917 5.57780 5.65400 5.80836 6.03941 6.24527 6.50311 6.56371 6.75511 6.93074 7.11556 7.18130 7.26270 8.46188 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.019305 B = 0.004955 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.046970 B = 5649.562539 C = 6956.687895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.501 3.499 3 O -0.607 6.607 4 N -0.713 5.713 5 C 0.117 3.883 6 C 0.131 3.869 7 N -0.744 5.744 8 C 0.151 3.849 9 C -0.195 4.195 10 C -0.143 4.143 11 C -0.200 4.200 12 C 0.025 3.975 13 F -0.161 7.161 14 C 0.001 3.999 15 C -0.503 4.503 16 H 0.077 0.923 17 C 0.038 3.962 18 N -0.829 5.829 19 Si 0.966 3.034 20 H -0.273 1.273 21 H -0.274 1.274 22 H -0.255 1.255 23 H 0.115 0.885 24 H 0.087 0.913 25 H 0.114 0.886 26 H 0.421 0.579 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.395 0.605 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.110 0.890 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.752 0.565 2.489 16.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.290 3.710 3 O -0.488 6.488 4 N -0.367 5.367 5 C -0.009 4.009 6 C 0.007 3.993 7 N -0.376 5.376 8 C 0.049 3.951 9 C -0.218 4.218 10 C -0.163 4.163 11 C -0.221 4.221 12 C 0.003 3.997 13 F -0.140 7.140 14 C -0.005 4.005 15 C -0.534 4.534 16 H 0.095 0.905 17 C -0.176 4.176 18 N -0.456 5.456 19 Si 0.789 3.211 20 H -0.199 1.199 21 H -0.199 1.199 22 H -0.179 1.179 23 H 0.133 0.867 24 H 0.106 0.894 25 H 0.132 0.868 26 H 0.259 0.741 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.230 0.770 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.128 0.872 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.336 1.207 2.299 16.542 hybrid contribution 1.546 0.431 -0.114 1.609 sum -14.790 1.638 2.186 15.041 Atomic orbital electron populations 1.21923 0.87280 1.06138 1.06766 1.21781 0.92623 0.82519 0.74061 1.90723 1.72443 1.33535 1.52124 1.45761 1.06124 1.09839 1.74932 1.21173 0.81258 0.96682 1.01749 1.21269 0.80721 0.95123 1.02211 1.43940 1.04363 1.05316 1.84023 1.17840 0.89838 0.86889 1.00529 1.20490 0.99297 0.90553 1.11500 1.20471 0.91899 0.97907 1.05976 1.20718 0.95782 0.95378 1.10210 1.17998 0.76058 0.94770 1.10851 1.91254 1.31139 1.97372 1.94280 1.17450 0.91061 0.92842 0.99127 1.19117 1.07280 0.98346 1.28688 0.90491 1.26420 0.99546 0.98839 0.92781 1.69864 1.24301 1.36074 1.15355 0.85427 0.78440 0.78788 0.78440 1.19853 1.19866 1.17898 0.86658 0.89423 0.86753 0.74065 0.92238 0.92639 0.90811 0.91398 0.77013 0.84682 0.84469 0.87159 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 10.32 71.24 0.74 -0.85 16 2 C 0.50 10.59 7.94 87.66 0.70 11.29 16 3 O -0.61 -20.07 17.09 -3.01 -0.05 -20.12 16 4 N -0.71 -12.69 5.56 -463.06 -2.57 -15.26 16 5 C 0.12 2.86 5.79 86.38 0.50 3.36 16 6 C 0.13 3.33 5.02 86.38 0.43 3.76 16 7 N -0.74 -27.33 5.63 -338.11 -1.90 -29.24 16 8 C 0.15 6.69 6.68 38.94 0.26 6.95 16 9 C -0.20 -7.47 9.29 22.36 0.21 -7.26 16 10 C -0.14 -5.59 10.03 22.40 0.22 -5.37 16 11 C -0.20 -9.23 9.99 22.28 0.22 -9.01 16 12 C 0.02 1.35 6.68 22.83 0.15 1.50 16 13 F -0.16 -9.36 14.28 44.97 0.64 -8.71 16 14 C 0.00 0.03 5.41 -21.12 -0.11 -0.08 16 15 C -0.50 -27.17 8.12 23.35 0.19 -26.98 16 16 H 0.08 3.95 7.15 -2.91 -0.02 3.93 16 17 C 0.04 2.05 4.52 85.24 0.38 2.43 16 18 N -0.83 -46.90 11.12 21.82 0.24 -46.66 16 19 Si 0.97 41.57 29.60 68.60 2.03 43.60 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 23 H 0.12 0.54 8.14 -2.39 -0.02 0.53 16 24 H 0.09 0.98 8.12 -2.39 -0.02 0.97 16 25 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.42 4.18 8.47 -92.71 -0.79 3.39 16 27 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.07 1.64 7.93 -2.38 -0.02 1.62 16 30 H 0.07 1.59 7.95 -2.39 -0.02 1.57 16 31 H 0.40 15.39 6.91 -92.71 -0.64 14.75 16 32 H 0.14 4.03 6.71 -2.91 -0.02 4.01 16 33 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 34 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 35 H 0.28 14.76 8.30 -92.70 -0.77 13.99 16 Total: -1.00 -72.74 304.59 1.98 -70.76 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: -0.30 Total: 25.89 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 3.89 Total: -20.26 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -4.23 Total: -91.16 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.05 Total: -20.12 kcal Atomic # 9 Polarization: -9.36 SS G_CDS: 0.64 Total: -8.71 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -72.74 1.98 -70.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161663294.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.739 kcal (2) G-P(sol) polarization free energy of solvation -72.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds