Wall clock time and date at job start Mon Mar 30 2020 19:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36940 * 120.00024 * 2 1 4 4 H 1.07997 * 120.00032 * 202.34335 * 3 2 1 5 5 C 1.38806 * 119.99572 * 22.34600 * 3 2 1 6 6 N 1.31622 * 120.00581 * 11.35526 * 5 3 2 7 7 Si 1.86803 * 119.99894 * 191.35232 * 5 3 2 8 8 H 1.48500 * 109.46901 * 0.02562 * 7 5 3 9 9 H 1.48494 * 109.47289 * 119.99850 * 7 5 3 10 10 H 1.48498 * 109.47521 * 240.00226 * 7 5 3 11 11 C 1.46504 * 120.00101 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47338 * 270.00108 * 11 2 1 13 13 N 1.46495 * 109.47143 * 180.02562 * 12 11 2 14 14 C 1.34776 * 120.00164 * 179.97438 * 13 12 11 15 15 O 1.21594 * 119.99780 * 359.97438 * 14 13 12 16 16 C 1.47533 * 120.00320 * 180.02562 * 14 13 12 17 17 C 1.39804 * 120.97903 * 359.97438 * 16 14 13 18 18 N 1.32188 * 118.98111 * 179.97438 * 17 16 14 19 19 C 1.31930 * 121.13912 * 0.02562 * 18 17 16 20 20 N 1.31726 * 122.20036 * 359.97438 * 19 18 17 21 21 C 1.32777 * 120.87071 * 0.02562 * 20 19 18 22 22 O 1.35281 * 120.61409 * 179.97438 * 21 20 19 23 23 H 1.09000 * 109.46779 * 274.20337 * 1 2 3 24 24 H 1.08996 * 109.47416 * 34.20657 * 1 2 3 25 25 H 1.08994 * 109.47214 * 154.20843 * 1 2 3 26 26 H 0.96993 * 120.00308 * 179.97438 * 6 5 3 27 27 H 1.08997 * 109.47145 * 149.99299 * 11 2 1 28 28 H 1.09004 * 109.46945 * 29.99657 * 11 2 1 29 29 H 1.08993 * 109.46964 * 59.99577 * 12 11 2 30 30 H 1.09004 * 109.46735 * 299.99678 * 12 11 2 31 31 H 0.97002 * 120.00063 * 359.97438 * 13 12 11 32 32 H 1.08005 * 120.50839 * 359.96414 * 17 16 14 33 33 H 1.08005 * 118.90496 * 180.02562 * 19 18 17 34 34 H 0.96704 * 113.99597 * 90.00380 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5338 2.3428 0.4571 6 7 0.3842 2.2690 1.0938 7 14 2.3365 4.0048 0.1686 8 1 3.6136 3.8168 -0.5656 9 1 1.4266 4.8614 -0.6334 10 1 2.6073 4.6572 1.4748 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7111 1.4417 13 7 3.1856 -2.9795 1.4411 14 6 3.5231 -3.5634 2.6080 15 8 3.2195 -3.0371 3.6613 16 6 4.2618 -4.8404 2.6074 17 6 4.6216 -5.4631 1.4085 18 7 5.2835 -6.6064 1.4540 19 6 5.6057 -7.1627 2.6061 20 7 5.2899 -6.6161 3.7622 21 6 4.6252 -5.4679 3.8140 22 8 4.3030 -4.9114 5.0042 23 1 -0.3633 0.0753 1.0249 24 1 -0.3634 0.8498 -0.5777 25 1 -0.3633 -0.9252 -0.4471 26 1 -0.0460 3.0774 1.4135 27 1 3.1499 -1.1382 -0.5144 28 1 1.6084 -2.0282 -0.5147 29 1 1.5002 -1.8416 1.9554 30 1 3.0417 -0.9517 1.9558 31 1 3.4280 -3.3991 0.6008 32 1 4.3625 -5.0169 0.4596 33 1 6.1473 -8.0972 2.6012 34 1 4.9739 -4.3069 5.3502 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663205902.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:21:12 Heat of formation + Delta-G solvation = 5.414873 kcal Electronic energy + Delta-G solvation = -19496.960654 eV Core-core repulsion = 16238.837005 eV Total energy + Delta-G solvation = -3258.123649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.58225 -39.19540 -37.83626 -36.08625 -34.35854 -33.64267 -32.13349 -31.19261 -28.21083 -25.95009 -25.53024 -24.49875 -23.15905 -20.88175 -20.62660 -19.49111 -18.25977 -17.74944 -16.78188 -16.72989 -15.65155 -15.33617 -14.88398 -14.73797 -14.45109 -14.14056 -13.91695 -13.68042 -13.25078 -12.49221 -12.45195 -12.31641 -11.53678 -11.27762 -11.01810 -10.93499 -10.90367 -10.64432 -10.33843 -10.02439 -9.97368 -9.92336 -9.76547 -9.70625 -8.78104 -8.61098 -6.87749 -5.79071 -3.26823 0.09418 0.55344 2.77285 2.96783 3.19918 3.35332 3.42086 3.44028 3.49937 3.66262 3.96055 4.43054 4.46687 4.61508 4.91795 5.11322 5.35761 5.56796 5.74851 5.79884 5.87722 6.20069 6.42215 6.53169 6.63137 6.68140 6.87388 7.15270 7.32714 7.55035 7.62177 7.68093 7.76135 8.26105 8.33177 9.16048 9.77942 10.25686 11.25890 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.033981 B = 0.003734 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.781382 B = 7497.012123 C = 7697.155408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.596 5.596 3 C -0.262 4.262 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.905 5.905 7 Si 0.907 3.093 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.143 3.857 12 C 0.094 3.906 13 N -0.717 5.717 14 C 0.557 3.443 15 O -0.517 6.517 16 C -0.253 4.253 17 C 0.196 3.804 18 N -0.530 5.530 19 C 0.335 3.665 20 N -0.545 5.545 21 C 0.416 3.584 22 O -0.454 6.454 23 H 0.030 0.970 24 H 0.048 0.952 25 H -0.002 1.002 26 H 0.254 0.746 27 H 0.050 0.950 28 H 0.043 0.957 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.393 0.607 32 H 0.177 0.823 33 H 0.206 0.794 34 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.414 -16.464 0.111 18.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.318 5.318 3 C -0.392 4.392 4 H 0.089 0.911 5 C -0.194 4.194 6 N -0.549 5.549 7 Si 0.737 3.263 8 H -0.203 1.203 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.014 3.986 12 C -0.031 4.031 13 N -0.368 5.368 14 C 0.341 3.659 15 O -0.393 6.393 16 C -0.263 4.263 17 C 0.029 3.971 18 N -0.245 5.245 19 C 0.048 3.952 20 N -0.270 5.270 21 C 0.228 3.772 22 O -0.262 6.262 23 H 0.048 0.952 24 H 0.066 0.934 25 H 0.017 0.983 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.227 0.773 32 H 0.194 0.806 33 H 0.222 0.778 34 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 8.998 -16.979 0.938 19.239 hybrid contribution 0.380 1.740 -0.191 1.791 sum 9.378 -15.239 0.747 17.909 Atomic orbital electron populations 1.20860 0.82075 0.95822 0.99540 1.43937 1.02099 1.00308 1.85463 1.19266 0.98200 0.85187 1.36506 0.91117 1.25073 0.97605 0.98722 0.98027 1.70075 1.17756 1.27215 1.39860 0.86154 0.78656 0.84039 0.77486 1.20268 1.21532 1.21609 1.21013 0.96480 0.89056 0.92010 1.22642 0.95773 0.82149 1.02511 1.46119 1.57990 1.25482 1.07230 1.17630 0.79918 0.83418 0.84935 1.90851 1.53767 1.63963 1.30745 1.22234 1.08032 1.00368 0.95619 1.23529 0.87306 0.88718 0.97537 1.68422 1.14405 1.11009 1.30648 1.25047 0.90933 0.97854 0.81380 1.68146 1.15031 1.11793 1.32004 1.19512 0.85196 0.86874 0.85638 1.84647 1.46316 1.62842 1.32381 0.95175 0.93365 0.98324 0.93615 0.93211 0.93866 0.91830 0.90977 0.77318 0.80611 0.77802 0.72347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.89 9.01 59.85 0.54 4.43 16 2 N -0.60 -14.44 2.93 -181.12 -0.53 -14.97 16 3 C -0.26 -7.00 9.67 -15.06 -0.15 -7.14 16 4 H 0.07 1.83 7.84 -52.49 -0.41 1.42 16 5 C 0.00 0.13 5.13 -17.43 -0.09 0.04 16 6 N -0.90 -26.07 10.59 55.49 0.59 -25.49 16 7 Si 0.91 21.50 29.57 -169.99 -5.03 16.48 16 8 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 C 0.14 2.67 5.82 -4.04 -0.02 2.64 16 12 C 0.09 1.73 6.00 -4.05 -0.02 1.71 16 13 N -0.72 -9.93 5.51 -61.35 -0.34 -10.27 16 14 C 0.56 8.41 7.78 -12.47 -0.10 8.32 16 15 O -0.52 -9.91 15.32 -15.86 -0.24 -10.16 16 16 C -0.25 -3.05 5.92 -104.57 -0.62 -3.67 16 17 C 0.20 1.84 10.80 -16.81 -0.18 1.66 16 18 N -0.53 -5.05 10.42 -14.29 -0.15 -5.20 16 19 C 0.33 2.97 12.27 -92.10 -1.13 1.84 16 20 N -0.54 -6.10 10.45 -14.32 -0.15 -6.25 16 21 C 0.42 5.17 7.85 -16.19 -0.13 5.05 16 22 O -0.45 -5.76 11.81 -38.68 -0.46 -6.21 16 23 H 0.03 0.79 7.42 -51.93 -0.39 0.40 16 24 H 0.05 1.25 7.19 -51.93 -0.37 0.87 16 25 H 0.00 -0.04 7.84 -51.93 -0.41 -0.44 16 26 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 28 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.39 3.93 6.60 -40.82 -0.27 3.66 16 32 H 0.18 1.10 6.53 -52.48 -0.34 0.76 16 33 H 0.21 0.99 8.06 -52.48 -0.42 0.57 16 34 H 0.41 3.47 9.06 45.56 0.41 3.88 16 LS Contribution 299.18 15.07 4.51 4.51 Total: -1.00 -34.36 299.18 -6.70 -41.06 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -3.01 Total: 1.63 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: -1.90 Total: 14.87 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: -0.58 Total: -62.17 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.70 Total: -16.37 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.36 -6.70 -41.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663205902.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.475 kcal (2) G-P(sol) polarization free energy of solvation -34.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds