Wall clock time and date at job start Mon Mar 30 2020 19:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36940 * 120.00024 * 2 1 4 4 H 1.07997 * 120.00032 * 202.34335 * 3 2 1 5 5 C 1.38806 * 119.99572 * 22.34600 * 3 2 1 6 6 N 1.31622 * 120.00581 * 11.35526 * 5 3 2 7 7 Si 1.86803 * 119.99894 * 191.35232 * 5 3 2 8 8 H 1.48500 * 109.46901 * 0.02562 * 7 5 3 9 9 H 1.48494 * 109.47289 * 119.99850 * 7 5 3 10 10 H 1.48498 * 109.47521 * 240.00226 * 7 5 3 11 11 C 1.46504 * 120.00101 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47338 * 270.00108 * 11 2 1 13 13 N 1.46495 * 109.47143 * 180.02562 * 12 11 2 14 14 C 1.34776 * 120.00164 * 179.97438 * 13 12 11 15 15 O 1.21594 * 119.99780 * 359.97438 * 14 13 12 16 16 C 1.47533 * 120.00320 * 180.02562 * 14 13 12 17 17 C 1.39804 * 120.97903 * 359.97438 * 16 14 13 18 18 N 1.32188 * 118.98111 * 179.97438 * 17 16 14 19 19 C 1.31930 * 121.13912 * 0.02562 * 18 17 16 20 20 N 1.31726 * 122.20036 * 359.97438 * 19 18 17 21 21 C 1.32777 * 120.87071 * 0.02562 * 20 19 18 22 22 O 1.35281 * 120.61409 * 179.97438 * 21 20 19 23 23 H 1.09000 * 109.46779 * 274.20337 * 1 2 3 24 24 H 1.08996 * 109.47416 * 34.20657 * 1 2 3 25 25 H 1.08994 * 109.47214 * 154.20843 * 1 2 3 26 26 H 0.96993 * 120.00308 * 179.97438 * 6 5 3 27 27 H 1.08997 * 109.47145 * 149.99299 * 11 2 1 28 28 H 1.09004 * 109.46945 * 29.99657 * 11 2 1 29 29 H 1.08993 * 109.46964 * 59.99577 * 12 11 2 30 30 H 1.09004 * 109.46735 * 299.99678 * 12 11 2 31 31 H 0.97002 * 120.00063 * 359.97438 * 13 12 11 32 32 H 1.08005 * 120.50839 * 359.96414 * 17 16 14 33 33 H 1.08005 * 118.90496 * 180.02562 * 19 18 17 34 34 H 0.96704 * 113.99597 * 90.00380 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5338 2.3428 0.4571 6 7 0.3842 2.2690 1.0938 7 14 2.3365 4.0048 0.1686 8 1 3.6136 3.8168 -0.5656 9 1 1.4266 4.8614 -0.6334 10 1 2.6073 4.6572 1.4748 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7111 1.4417 13 7 3.1856 -2.9795 1.4411 14 6 3.5231 -3.5634 2.6080 15 8 3.2195 -3.0371 3.6613 16 6 4.2618 -4.8404 2.6074 17 6 4.6216 -5.4631 1.4085 18 7 5.2835 -6.6064 1.4540 19 6 5.6057 -7.1627 2.6061 20 7 5.2899 -6.6161 3.7622 21 6 4.6252 -5.4679 3.8140 22 8 4.3030 -4.9114 5.0042 23 1 -0.3633 0.0753 1.0249 24 1 -0.3634 0.8498 -0.5777 25 1 -0.3633 -0.9252 -0.4471 26 1 -0.0460 3.0774 1.4135 27 1 3.1499 -1.1382 -0.5144 28 1 1.6084 -2.0282 -0.5147 29 1 1.5002 -1.8416 1.9554 30 1 3.0417 -0.9517 1.9558 31 1 3.4280 -3.3991 0.6008 32 1 4.3625 -5.0169 0.4596 33 1 6.1473 -8.0972 2.6012 34 1 4.9739 -4.3069 5.3502 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663205902.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:21:11 Heat of formation + Delta-G solvation = -22.357277 kcal Electronic energy + Delta-G solvation = -19498.164944 eV Core-core repulsion = 16238.837005 eV Total energy + Delta-G solvation = -3259.327940 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.43664 -40.39898 -38.74818 -37.80695 -35.81032 -34.54020 -33.43376 -32.71016 -29.75529 -27.92348 -26.53903 -25.44813 -24.65945 -22.41030 -22.02204 -20.34999 -19.13851 -18.95547 -18.64254 -17.58527 -16.95082 -16.69620 -16.44527 -16.00036 -15.57785 -15.39018 -14.99724 -14.90935 -14.83165 -14.20672 -14.12667 -13.33979 -13.10774 -12.81510 -12.63356 -12.50495 -12.45243 -12.04308 -12.00086 -11.81622 -11.74317 -11.02151 -10.82995 -10.66905 -10.51345 -10.11363 -8.85887 -7.84392 -5.33947 -0.74778 -0.23992 1.47099 1.48482 1.58531 1.72696 1.93074 2.23058 2.52097 2.61819 3.00122 3.20312 3.31575 3.52119 3.66996 3.85715 4.16708 4.26196 4.35269 4.40207 4.68503 4.86409 5.06037 5.08073 5.12187 5.33781 5.40374 5.63060 5.64522 5.73944 6.31690 6.37762 6.46216 6.82880 7.11974 7.14731 7.84496 8.26502 9.19425 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.033981 B = 0.003734 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.781382 B = 7497.012123 C = 7697.155408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.614 5.614 3 C -0.265 4.265 4 H 0.079 0.921 5 C -0.054 4.054 6 N -0.940 5.940 7 Si 0.969 3.031 8 H -0.262 1.262 9 H -0.291 1.291 10 H -0.297 1.297 11 C 0.144 3.856 12 C 0.116 3.884 13 N -0.699 5.699 14 C 0.560 3.440 15 O -0.566 6.566 16 C -0.270 4.270 17 C 0.214 3.786 18 N -0.533 5.533 19 C 0.344 3.656 20 N -0.560 5.560 21 C 0.407 3.593 22 O -0.474 6.474 23 H -0.002 1.002 24 H 0.021 0.979 25 H 0.037 0.963 26 H 0.247 0.753 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.416 0.584 32 H 0.210 0.790 33 H 0.245 0.755 34 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.158 -18.428 -1.746 21.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.337 5.337 3 C -0.395 4.395 4 H 0.097 0.903 5 C -0.249 4.249 6 N -0.586 5.586 7 Si 0.797 3.203 8 H -0.186 1.186 9 H -0.218 1.218 10 H -0.224 1.224 11 C 0.017 3.983 12 C -0.010 4.010 13 N -0.353 5.353 14 C 0.346 3.654 15 O -0.446 6.446 16 C -0.279 4.279 17 C 0.047 3.953 18 N -0.248 5.248 19 C 0.058 3.942 20 N -0.286 5.286 21 C 0.219 3.781 22 O -0.285 6.285 23 H 0.016 0.984 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.254 0.746 32 H 0.226 0.774 33 H 0.260 0.740 34 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 10.798 -19.003 -0.964 21.878 hybrid contribution -0.086 2.177 0.373 2.210 sum 10.711 -16.826 -0.592 19.955 Atomic orbital electron populations 1.20607 0.82518 0.96521 0.97468 1.44181 1.02332 1.01673 1.85539 1.19657 0.98418 0.86338 1.35071 0.90319 1.25845 0.98386 1.02103 0.98607 1.70252 1.19337 1.27452 1.41609 0.85177 0.78281 0.79962 0.76868 1.18572 1.21770 1.22420 1.21186 0.97432 0.87582 0.92060 1.22014 0.94241 0.83193 1.01595 1.45721 1.57253 1.23969 1.08323 1.18021 0.79177 0.84017 0.84186 1.90830 1.55762 1.65492 1.32506 1.21906 1.09765 0.99490 0.96779 1.24011 0.85462 0.88151 0.97651 1.68581 1.14628 1.10927 1.30699 1.25913 0.89362 0.98353 0.80529 1.68245 1.15664 1.11479 1.33174 1.19722 0.85354 0.87388 0.85597 1.84589 1.47530 1.63402 1.32966 0.98385 0.96018 0.94475 0.94347 0.91215 0.90450 0.94616 0.94597 0.74592 0.77354 0.73952 0.70842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.39 9.01 127.77 1.15 9.54 16 2 N -0.61 -29.36 2.93 -726.95 -2.13 -31.48 16 3 C -0.26 -14.03 9.67 84.03 0.81 -13.22 16 4 H 0.08 3.97 7.84 -2.91 -0.02 3.94 16 5 C -0.05 -3.01 5.13 84.86 0.44 -2.58 16 6 N -0.94 -55.75 10.59 21.65 0.23 -55.52 16 7 Si 0.97 44.57 29.57 68.60 2.03 46.60 16 8 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 9 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 10 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 11 C 0.14 5.05 5.82 86.38 0.50 5.56 16 12 C 0.12 4.22 6.00 86.38 0.52 4.74 16 13 N -0.70 -18.18 5.51 -466.29 -2.57 -20.75 16 14 C 0.56 16.56 7.78 86.69 0.67 17.23 16 15 O -0.57 -22.30 15.32 16.21 0.25 -22.06 16 16 C -0.27 -6.07 5.92 -19.83 -0.12 -6.18 16 17 C 0.21 3.32 10.80 85.02 0.92 4.23 16 18 N -0.53 -8.24 10.42 -199.12 -2.07 -10.31 16 19 C 0.34 4.98 12.27 180.86 2.22 7.20 16 20 N -0.56 -11.48 10.45 -312.04 -3.26 -14.74 16 21 C 0.41 9.77 7.85 85.17 0.67 10.44 16 22 O -0.47 -12.22 11.81 -65.44 -0.77 -12.99 16 23 H 0.00 -0.12 7.42 -2.39 -0.02 -0.14 16 24 H 0.02 1.12 7.19 -2.39 -0.02 1.10 16 25 H 0.04 1.47 7.84 -2.39 -0.02 1.45 16 26 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 27 H 0.07 2.20 8.03 -2.39 -0.02 2.18 16 28 H 0.08 2.22 7.86 -2.39 -0.02 2.20 16 29 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.42 6.83 6.60 -92.71 -0.61 6.22 16 32 H 0.21 1.63 6.53 -2.91 -0.02 1.62 16 33 H 0.24 1.33 8.06 -2.91 -0.02 1.31 16 34 H 0.43 7.51 9.06 -74.05 -0.67 6.84 16 Total: -1.00 -76.71 299.18 -0.64 -77.35 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -0.13 Total: 6.94 kcal Atomic # 6 Polarization: 29.18 SS G_CDS: 7.78 Total: 36.97 kcal Atomic # 7 Polarization: -123.01 SS G_CDS: -9.80 Total: -132.81 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -0.52 Total: -35.05 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -76.71 -0.64 -77.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663205902.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.996 kcal (2) G-P(sol) polarization free energy of solvation -76.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds